LOC122362468 (cetp)


Basic Information

Item Value
gene id LOC122362468
gene name cetp
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25389034 ~ 25394241 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263913.1
TCAGGGGCAGTTGCGTTCTCTTGTTCTCCAGAAGAGTGACATGACAAATCAGGGCCTGTCCACCCCCCTCTTCCTTTGAGGCTAACTCTGGTCCTGAAAGTGTCCCTCCTCCTCAGATACTTGCTGAATGGAAACAGAGCTCCATTCTCTTTTGAAAGAGAAACCTGAATATCTGTAAAAGACGGGctcatctgtgttttttcagACTTTGTTAAGATGGAGAGGAGTGCTGCGCTGCTCCTGGTTCTCGCTCTGGTCAATATTAGTAGTTGTTGCCTGGATCCTCCCGCTGCCTACAGGTTGACGGGAGCAGTTTGCAGACTTACCTATCCAGCCGCTGTAGTGCTTAATGAAAAAACTACTGAAGTCATACAGGCCGCTTTTCAGCATGCCAGGTATCCCAGCGTAGAGGGACAACGATCAATAGGCTTTGGGACGGTCAAATATGGATTCCACAATTTAGAGATCCATAACCTTTCCATTGGGAAGAGTGATTTTGAGCTGAAGGAGAATGAAGGAATAGGGATCTCCATTTCAAATGTGTCTGCTGTATTTAAAGGGACCATCAACTATGGATATGGCAGCTGGCTACTTGACCTAAAACAGTCAGTGGATTTTGAAGTAGATTCACAAATCGACCTGGTCATCAATCCAAAACTATacTGTGGAAAAGGCAAAGTGGCTGCAGACACATCAGACTGTTACCTCACATTTCACAAACTGAAGCTGCTCCTGCagggagacagagaGCCTGGCTGGCTGAAAAGAATGTTCACAGATATCGTGACTTTCACAGTGAAGTTAGTAGTGAAGTCACAGATCTGTAAGGAAATAAACAATGTTGCTAACATATTAGCAGACTTCATACAAGAGCAAGCAGAACAGTTTCTCAGTGATGGTGACATTGGTGTGGATATCTCTGTGACTTCTTCCCCAATCATCAAATCTAACTATATTGAATCATACCACAAGGGGTtggttatttataataatacaaaatcagACCTCAGCACCTCTATATTTAATCCGTCACAACTGACCGAGAACCGCATGCTGTGCTTCTGGATTTCTGATGGGCTTCTAGACCCACTAATGGGCGCTGCACACCACGATGGACGATTCATTCGCAATATATCTGGAACACAACTCACGGAGCTGTTTCAGAAAGAGCTCTCCTCGGCCATGCCTGCGTTGTTGAACAAGTGGCTGTCCTCTGAGGGTCCGATGTTAAAGGCGAGGAGTGTGTCGGTTCCACACTTGTGGACCACCACAGAGGGCACATATGTCAGAGCTGTGGCTGGAGTCGAGCTCCTACTGAACAGTCAAGACATACCGGCACTATATTTTGAGACAGATGTGGAAGTTGTTGTAAATGCCTCGTATGCAGAAAAGAAACTAACTCTGAAGGCCAGTGCAGAGCGTATTTCTATAACAAACATTTCTACATCAGACGGACCCACTGAGATGGAGAACTTGAGAAGTTATCTTAAGGAGGCTGTGGAAAAGATGGGAATCCCCAAAGTCATATCATACCTGGAGCCAGAATTAACCGCTTTGATGGATGAACAGGGACTCTATCTCTTTGACCTCATTAATCCTGAAATTTTACCTCAGGATGGATATGTGATTGTCCAGCTGGATTTTGGTTTTCCGCAACATCTGCTGGTGGAATTCCTCAAAAGGACGCTGAACTGACGGTCTTGTCTCAGCTGACTGGATTTTGTCTTTCGCATTACCGACTTGCACACATACATCACATAAACAATTCCTATGAATTACTATATTTTATCTGGCTTTCTGCCATTATGGCTTGTATGTAAAGAACTTAAATTCTTTGTGTAGCTGTTCAGTGttcaattatttgtaaatatgaaaGCGCGAATCACAACGATATAGTTTTATGACCTTTAGTAACGTGATCTCACGACTTCCATAATGCAATGAGGAGATTGTATTACcattattaaacatttcctGGTGCTGTCACGAAA

Function

symbol description
cetp Predicted to enable several functions, including cholesterol binding activity; phosphatidylcholine binding activity; and triglyceride binding activity. Predicted to be involved in several processes, including glycerolipid metabolic process; lipid homeostasis; and plasma lipoprotein particle remodeling. Predicted to act upstream of or within reverse cholesterol transport and steroid metabolic process. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Is expressed in asteriscus; liver; otic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in carotid artery disease and hyperalphalipoproteinemia 1. Orthologous to human CETP (cholesteryl ester transfer protein).

NR:

description
PREDICTED: cholesteryl ester transfer protein isoform X1

GO:

id name namespace
GO:0043691 reverse cholesterol transport biological_process
GO:0034364 high-density lipoprotein particle cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K16835 CETP; cholesteryl ester transfer protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263913.1 True 1991 mRNA 0.44 16 25389034 25394241

Neighbor

gene id symbol gene type direction distance location
herpud1 herpud1,LOC107686272,LOC107549637,LOC107740310,LOC107672290 coding upstream 1174 25381708 ~ 25387860 (+)
slc12a3 slc12a3,LOC107740340,LOC107583876 coding upstream 7891 25371705 ~ 25381143 (+)
nup93 nup93,LOC107549634,LOC107740311,LOC107583877 coding upstream 17567 25349481 ~ 25371467 (+)
phaf1 si:dkey-102f14.5,LOC107686270,LOC107738752,LOC107583793,LOC107549632,LOC107740317,LOC107672279 coding upstream 55029 25322656 ~ 25334005 (+)
LOC122362888 LOC107686267,LOC107738755,LOC107738765 coding upstream 94419 25290002 ~ 25294615 (+)
nlrc5 nlrc5,LOC107580006 coding downstream 641 25394882 ~ 25413257 (+)
cpne2 cpne2,LOC107583787,LOC107740309,LOC107672324 coding downstream 23622 25417863 ~ 25436773 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding downstream 51348 25445589 ~ 25457287 (+)
si:ch211-216l23.2 LOC107549641,LOC107740307,LOC107583785,LOC107672316 coding downstream 63757 25457998 ~ 25464103 (+)
znf423 si:ch211-216l23.1,LOC107738741,LOC107583782,LOC107740334,LOC107672235,LOC107549642 coding downstream 76833 25471074 ~ 25612128 (+)
G129262 NA non-coding upstream 39996 25348756 ~ 25349038 (+)
G129246 NA non-coding upstream 100497 25288143 ~ 25288537 (+)
G129135 NA non-coding upstream 247175 25063454 ~ 25141859 (+)
LOC122362644 NA non-coding upstream 339429 25034118 ~ 25049605 (+)
G129270 fam192a non-coding downstream 45807 25440048 ~ 25442441 (+)
G129360 NA non-coding downstream 268256 25662497 ~ 25663585 (+)
G129368 NA non-coding downstream 280830 25675071 ~ 25675310 (+)
G129370 NA non-coding downstream 282316 25676557 ~ 25676861 (+)
G129435 NA non-coding downstream 572775 25967016 ~ 26221023 (+)
mt2 NA other upstream 40440 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 79294 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 800697 24583845 ~ 24588337 (+)
G128858 NA other upstream 931474 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1652186 23457100 ~ 23736848 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 527026 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 558089 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 834853 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 909646 26303887 ~ 26306806 (+)

Expression


Co-expression Network