LOC122362472 (si:ch211-234p18.3,rasgrf1,LOC107690363,LOC107691143,LOC107709805,LOC100708145,LOC102298753)


Basic Information

Item Value
gene id LOC122362472
gene name si:ch211-234p18.3,rasgrf1,LOC107690363,LOC107691143,LOC107709805,LOC100708145,LOC102298753
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 333483 ~ 354885 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263917.1
ttttattgtgtctgttttgcagtattattttacagttagcTTCAACCATGAGAATCAGAAGGCTCTGGAGCTTCGTACAGAAGATGTTAAGGACTGCGATGAATGGGTGGCAGCAATATCACATGCCAGCTACAGAAACCTGGCCACCGAGCATGAAACGCTCATGCAGAAGTACCTCCATCTACTCCAAATCGTGGAGACCGAGAAAACAGTTGCTAAGCAACTTCGACAACAGATAGAAGATGGGGAGATTGAGATTGAACGTCTAAAATCAGAGATCGCGGCCATGCTCAAAGACAATGAGAAGATTCAGTCGAATCCCACCACTGCACCTAGTGATGATGATTCAGAAATCAAGAAAATCAAGAAAGTGCAAAGCTTTCTGAGGGGCTGGATGTGTCGGCGAAAGTGGAAGACCATCATTCAAGACTACATCCGTTCGCCACATGCAGAGAGCATGAGGAAGAGGAACCAAGTCGTCTTTAGCATGCTGGAAGCAGAGGCTGAATACGTCCAACAGCTCCACATCCTTGTCAACAACTTCTTGAGACCGCTTCGCATGGCTGCCAGCTCGAAGAAACCGCCCATAACTCATGATGATGTCAGCAGCATATTCCTCAACAGCGAAACCATAATGTTTCTGCATCAGATATTCTACCAAGGGTTGAAAGCTCGAATAGCAAGCTGGCCAACATTAGTCTTGGCCGACCTATTTGACATCCTGCTGCCCATGCTGAACATCTACCAGGAGTTTGTACGTAACCACCAGTACAGTTTGCAGATCTTGGCCCACTGCAAGCAGAACCGCGACTTCGACAAGCTGCTTAAACAATATGAAGCCAAACCTGACTGTGAGGAGCGCACACTGGAGACGTTCCTCACATACCCCATGTTCCAGATTCCTCGTTACATACTGACCCTCCATGAGCTGTTAGCACATACACCGCATGAGCATGTGGAGAGAAACAGCTTGGATTATGCCAAGTCAAAGCTGGAGGAGCTTTCCAGGATCATGCACGATGAAGTTAGCGAGACGGAGAACATTCGGAAGAACCTCGCTATCGAGCGTATGATCGTGGAGGGCTGTGAAATTCTCCTAGACACCAGCCAGACCTTTGTCAGACAAGGATCTCTGATACAAGTGCCCATGAGTGAGAAGGGCAAGATCACCCGTGGCCGACTGGGCTCTCTGTCTCTGAAGAAGGAGGGAGAGAGGCAGTGTTTCCTCTTCTCCAAACATCTGATCATCTGCACTAGGGGCTCTGGAGGAAAACTACACCTCACCAAGAATGGAGTGGTGTCTCTCATTGACTGCACACTGATAGAGGAACCAGAGGGCACAGATGACGAGTCCAAGTCAGACAAGAGCGGTCAGGACATGGAGCACCTGGATTTTAAGATTGTGGTAGAGCCCAAAGACAGCCAGTCCTTCACCATCATCCTGGTGGCCTCCTCACGGCAAGAGAAGTCAGCCTGGACCAGTGACATCAGCCAGTGCATAGATAACATTCGTTGTAATGGGCTGATGATGAACGCCTTCGAGGAGAACTCCAAAGTCACTGTGCCCCAGATGATCAAGTCTGATGCCAGTTTGTACTGTGATGACGTGGATATCCGCTTCAGTAAGATGATGAACTCCTGCAAGGTGTTGCAGATCCGCTACGCCAGCGTGGAACGCCTGCTGGAGAGGTTGACTGACCTGCGATTCCTCTCCATCGACTTCCTCAACACCTTCCTGCACTCCTACCGCGTGTTCACCAGCGCTGACGTGGTGCTCGACAAACTCATCACCATCTACAAGAGGCCTATCAGTGCCATACCAGCCCGATCCCTGGAGCTGTTTTTCGCGAGCAGCCAGAACAACAAGCTCCTCTATGGAGAGCCACCAAAGTCGCCCCGTGCCAGCCGCAAGTTCTCCTCCCCACCCCCACTGGCCATCACCAAGACCTCGTCCCCCAACCGCCGCCGCAAACTGTCCCTCAACATCCCCATCATCACCGGTGGGAAGGCTCTGGACCTGGCTGCCCTTAGCTGTTCCTCCAATGGCTATGCAAGCATGTACTCCTCCATGTCCCCTTTCAGCAAGACCACGCTGGACATCAACAAGCTCTATGTGTCCAGCCCTATCACCAGCAAGATTCCTGATGATGGTGAAGGCAAGACGGACAAGGCTGATGAAGTTTCGCTGTGCAAACAGGACATTTCAGTGAGGGAGGAAAGCGACAACGACCAGATCCAGAGTGACGAGGCAGAGGCTGAAGTGTCGCCCACCAAATCACCCACCACTCCCAAAAACGTCAAATGCAAAAACTCCTCAGAATTCTCTCTGTTCTCATACAATAATGGCATGGTGATGTCGTCCTGTCGGGAGCTGGATAACAACCGTAGCGCCTTGTCTGCCGCTTCTGCCTTCGCCATTGCTACTGCTGGTGCCAACGAGGGCACGCCGACCAAGGAGAAGTACCGCCGCATGTCTCTGGCAAGCACAGGGTTCCCCACAGATCAGAGGAACGGAGATAAGGAGTTTGTGATTCGCCGAGCAGCAACTAACAGAGTTCTCAATGTCCTCAGGCACTGGGTGTCCAAACACGCGCAGGACTTTGAAACCAACACTGAGCTCAAAATGAAAGTGATTAGTTTCCTGGAGGAAGTGATGCATGACCCTGAACTTCTGACCCAAGAAAGGAAAGCCGCTGCCAACATCATAAGGACACTGACACAGGAGGATCCTGGTGACAATCAGATCTGTCTGGAGGAGGTGCTGCAGATGGCTGAATGCCCAAAGACTGAGTGTTTTGAATCTCTGTCAGCGATGGAGCTAGCTGAACAAATCACTCTTCTCGATCACATCGTCTTCAGGAGCATTCCCTACGAGGAGTTCCTGGGCCAAGGATGGATGAAGACAGACAAGACGGAGAGAACTCCATACATCATGAAGACAAGTCAGCACTTCAATGATATGAGTAATCTCGTGGCCTCTCAGATCATGAGCCACACAGATGTGGGCTCTAGAGCCAGCTCTATTGAAAAATGGGTAGCAGTGGCTGATATTTGCCGCTGTCTCAACAATTACAACGGTGTCTTGGAGATCACGTCTGCTCTGAACCGGAGCGCCATCTACAGGCTAAAGAAGACTTGGGCGAAAGTGTGCAAACAGACTAAAGCCCTAATGGACAAACTTCAAAAGACCGTGTCATCGGAGGGAAGGTTTAAAAACCTAAGGGAAACTCTAAAAAACTGTAATCCACCTTGTGTTCCATATCTGGGTATGTATTTGACAGACCTCGCATTTATCGAAGAGGGAACACCAAACTTCACAGAAGAAGGGCTGGTTAACTTCTCAAAGATGAGAATGATATCTCATATAATACGAGAGATCCGACAGTTCCAGCAAACTCCGTACAGAATTGAGCACCAACCAAAGGTTAGacaaataattcatattcagATCAAGTTCTGACACCTCCATGCATCAGTGCTGCTTCAATAATAT

Function

symbol description
rasgrf1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within regulation of Rho protein signal transduction and small GTPase mediated signal transduction. Orthologous to human RASGRF1 (Ras protein specific guanine nucleotide releasing factor 1).

NR:

description
ras-specific guanine nucleotide-releasing factor 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263917.1 True 3493 mRNA 0.50 25 333483 354885

Neighbor

gene id symbol gene type direction distance location
LOC122322910 NA coding upstream 125357 207287 ~ 208126 (+)
LOC122322909 NA coding upstream 127882 204768 ~ 205601 (+)
cfap45 cfap45,LOC107758640,LOC107549265,LOC107717174,LOC107596892 coding downstream 17257 372142 ~ 383071 (+)
tbrg1 tbrg1,LOC107549267,LOC107669777,LOC107717176,LOC107676756 coding downstream 30579 385464 ~ 393966 (+)
c18h19orf54 LOC107549270,LOC107748228,LOC107669776 coding downstream 91816 446701 ~ 451209 (+)
rasgrp4 rasgrp4,LOC107758090,LOC107676755,LOC107662146,LOC107758237 coding downstream 193932 548817 ~ 566665 (+)
ppp1r13l ppp1r13l,LOC107757772,LOC107758239 coding downstream 225861 580746 ~ 596414 (+)
G123257 NA non-coding downstream 6508 361393 ~ 363036 (+)
G123282 LOC107676751,LOC107758351 non-coding downstream 109219 464104 ~ 476401 (+)
G123301 ryr1b,LOC107676751,LOC107596888,LOC107758351 non-coding downstream 156413 511298 ~ 512632 (+)
G123312 NA non-coding downstream 174513 529398 ~ 529619 (+)
G123422 map3k10,LOC107560156,LOC107554498,LOC107758231,LOC107668271,LOC107756783 non-coding downstream 495768 850653 ~ 919977 (+)
G123243 NA other upstream 224651 108369 ~ 108832 (+)
LOC122362993 LOC107758246,LOC107662138,LOC107657475,LOC107757244 other downstream 459866 814751 ~ 823675 (+)
tmem123 NA other downstream 690309 1045194 ~ 1054735 (+)
G123568 NA other downstream 1210541 1565426 ~ 1571931 (+)
G123664 NA other downstream 1646901 2001786 ~ 2002290 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other downstream 1852314 2207199 ~ 2240260 (+)

Expression


Co-expression Network