rabl2 (rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941)


Basic Information

Item Value
gene id rabl2
gene name rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20666753 ~ 20671837 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263951.1
TGTGCACTGAATTTTGGGCTGGCGATGGTTGGCGGTAGATGCACGTGTGGGGAGGTTTAAACTGTGAAGCACGGAATTATGGAGTGCGTTATTTATCGAACTGCAAGACGTATAATGTTTACTGAGCTGTTGGAGTCTGGAGTTGCACAATTTGTCTTCGAAATCGATTTTAAGTAATAAAGACTACGAGACAGTTAAGGTTGTGTTAAGGTTTCTACACCTCACTAGACTCTATAGGAGGATATAATCGTTAGGCGGATTTTTTCAAACCGTTTTAGTTGCGTTTAGATGCGTTTTAGTCTGCCGCAAATCATAAAAGAGGGAGAATAAATGAAACAGGCACCTTTAAAGACAGCTCGGCGCTTACTAGGAGGAGTCCCTTTATGGGTCCTTGCGTTGCTTAGAGACGCGTTGTTGTCGTGCATGTTCAGTGAATTTTCTCGAGCCAAACCGATAATTTTCATCAGAGAATAGCGATGTTTTTCTCGTTTACAATCCAGCCGTGAATTCAAACAAATTGTCGACGAGCATTAAGTGCATCTGCCTGGGATTAGCTGTTCGTGTGATGGAGTAAAGCAGCAGCGACTGTCATCATCGTCTAATCCCGCGGCGTTAAGAGGCTCAGTGTTTAAACTCCTGCTGCTCTCTATCTCGCGATGGACGCAGGAGACATTTCCGATCTGGACCTGGACAAATACGACGCCGACGAGCAGGTCAAAATCATCTGCCTCGGAGACAGCGCTGTGGGCAAATCCAAGCTTATGGAGAGATTCCTTATGGATGGATATCGTCCTCAGCAGCTCTCCACATACGCATTGACTCTCTACAAATACACCACCACTATCAATGGGCAAACTGTCCTGGTTGATTTCTGGGATACTGCAGGACAGGAACGTTTTCGAAGCATGCACCCGTCATACTACCACAAAGCCCACGCCTGTATCATGGTGTTTGATGTCCAGAGGAAAATCACATATAAGAACCTCCCAATTTGGTACAAAGAACTGCGAGAGTACCGGCCAGAGATTCCCTGTCTGGTGGTCGCTAACAAGATCGATGCTGACATGAAGGTCACCCAGAAGAATTTCAACTTCGCTAAGAAACAAGGTCTGCCCTTCTACTTTGTATCTGCTGCTGATGGGACCAATGTGGTCAAGGTGTTTAAAGACGCCATTCAGATGGCTCTGTCCTACAAGAGGAACTCCAACGACTTTATGGATGAAGTTATGAGGGAGCTAGAGAACTTTGATTTAGACAGTAAAGAAGAATCGTCTGATAAAGATGAGGAGACACAAGAGGGAAAACCAGACTCGGCGTGATCACGTCACGTTCTCCATCCATCGTTCTCTCATTCTCATTCTCTGCTGCTCCCGCACTTCTACTGATGAGTTCCTCAGATCATGGCTGTCCTCCCACCGTCCTGAGCTGCTACTCTACCTCACACCACTCAAAGCGTGTCTCTTCATCAAATAAATTACGATTCTGTGAATGTACAGCTGATTGACCTGATAATGGAATCACAACGCACTCAGATTTGATGCTTATTGTGCAGATGTAGTAAAAGCACTCTGTCTGGAACGTGAAGCTTTGTGCCGAATgtaacatgaaatatttttaaaaataatttaatagttGCACATTTCAAGGAATTTGTACCAGTATCGGTAAACTACTTGATCTTTTTGCAAGGGTAGTTAAATTATactgttctttaaaacatttaatacatttttattagtgtaaAAGTTTATGTCCACGGTATTTGCCAACTAAacagatttttatattaaaagtgatttgttGCAAGCGCATCAGAGCGCAGGACAAGACTCTCCTCGGGGACGGATGAGAAGACAGCCATGACACAAACTCAGTGCAGCGGACGAATGAGTGTTTGTGTGGATGTGAAAACCAGAGCAAAGAAACAGCAGAGACCGCTCCGGACGATCACAAGCCTGCCGGGTTACAGTTCAGGCTGTGAAACACTGTCTCGAAACGATACACTTGAAAATGTGCAGCTTTCAGTCTTTGGTAAAGCTTTCATGTGCCACATCTGCATGCAGCTGTCTGACGAGCTGTGGAAGTTCAGGAGTGCAATGTCACGTTACAACAAAACGGTCCCATATTTTTAAGTActgattataaatgatttaagttttaatgtttatcaTAGTTGTCTTTTCTAATGAATGTAATTTATGCAGATTACGTTCGGATAGATGTTTCTCGTGCTTAGTTGTAATAATAACGCAGAAATTGTCCTaaaattatgagaaaaataGACACATTTTGGCAGGTTTcgtacacaaaattaaaaaaaaatgatgaccCAGATATTTCTTAATGAGTTTCCCCTATagatacaataaataattattactgtaaagagcatttatatatattcatattgtaCAAActgtgaaggttttttttttttcgattattgcttttggtttgtgttttgtgatgttttgcaCAAGTGCTTTATATATGGAACATACATCCATGTTGGTGAATTCAAATAGAAGCAGCTTAGTACTCGACATGAATGTGTACGGTATCTGAACTGGATACAACTTTTACGTCATTAGAAATACGTTCTTATTTCTGAAGCCTCTGGTGGTTTCATGTTATGTACACTCATTTGTTCTGTAAGCAAAATGTGGTTCATATTAAAGAAATTTAAACAA
>XM_043263952.1
CCTGTACGATTACGCACGGAGAGACTTAATTTCTTCGTTTTTAAAGTTTCAgatgcaagttttttttaaatgtagtatcGTAATTATGAACACAATGGTATGTAGTGCAAACAGctttactgtttactgcacGTTATTCTTCGTTATTTACCTGTAGCGGCTAATGAACCGCAAGCCTCACCCATAGGCTTTTCCTTTGAGGGAAAAGAGCTGTTCGTGTGATGGAGTAAAGCAGCAGCGACTGTCATCATCGTCTAATCCCGCGGCGTTAAGAGGCTCAGTGTTTAAACTCCTGCTGCTCTCTATCTCGCGATGGACGCAGGAGACATTTCCGATCTGGACCTGGACAAATACGACGCCGACGAGCAGGTCAAAATCATCTGCCTCGGAGACAGCGCTGTGGGCAAATCCAAGCTTATGGAGAGATTCCTTATGGATGGATATCGTCCTCAGCAGCTCTCCACATACGCATTGACTCTCTACAAATACACCACCACTATCAATGGGCAAACTGTCCTGGTTGATTTCTGGGATACTGCAGGACAGGAACGTTTTCGAAGCATGCACCCGTCATACTACCACAAAGCCCACGCCTGTATCATGGTGTTTGATGTCCAGAGGAAAATCACATATAAGAACCTCCCAATTTGGTACAAAGAACTGCGAGAGTACCGGCCAGAGATTCCCTGTCTGGTGGTCGCTAACAAGATCGATGCTGACATGAAGGTCACCCAGAAGAATTTCAACTTCGCTAAGAAACAAGGTCTGCCCTTCTACTTTGTATCTGCTGCTGATGGGACCAATGTGGTCAAGGTGTTTAAAGACGCCATTCAGATGGCTCTGTCCTACAAGAGGAACTCCAACGACTTTATGGATGAAGTTATGAGGGAGCTAGAGAACTTTGATTTAGACAGTAAAGAAGAATCGTCTGATAAAGATGAGGAGACACAAGAGGGAAAACCAGACTCGGCGTGATCACGTCACGTTCTCCATCCATCGTTCTCTCATTCTCATTCTCTGCTGCTCCCGCACTTCTACTGATGAGTTCCTCAGATCATGGCTGTCCTCCCACCGTCCTGAGCTGCTACTCTACCTCACACCACTCAAAGCGTGTCTCTTCATCAAATAAATTACGATTCTGTGAATGTACAGCTGATTGACCTGATAATGGAATCACAACGCACTCAGATTTGATGCTTATTGTGCAGATGTAGTAAAAGCACTCTGTCTGGAACGTGAAGCTTTGTGCCGAATgtaacatgaaatatttttaaaaataatttaatagttGCACATTTCAAGGAATTTGTACCAGTATCGGTAAACTACTTGATCTTTTTGCAAGGGTAGTTAAATTATactgttctttaaaacatttaatacatttttattagtgtaaAAGTTTATGTCCACGGTATTTGCCAACTAAacagatttttatattaaaagtgatttgttGCAAGCGCATCAGAGCGCAGGACAAGACTCTCCTCGGGGACGGATGAGAAGACAGCCATGACACAAACTCAGTGCAGCGGACGAATGAGTGTTTGTGTGGATGTGAAAACCAGAGCAAAGAAACAGCAGAGACCGCTCCGGACGATCACAAGCCTGCCGGGTTACAGTTCAGGCTGTGAAACACTGTCTCGAAACGATACACTTGAAAATGTGCAGCTTTCAGTCTTTGGTAAAGCTTTCATGTGCCACATCTGCATGCAGCTGTCTGACGAGCTGTGGAAGTTCAGGAGTGCAATGTCACGTTACAACAAAACGGTCCCATATTTTTAAGTActgattataaatgatttaagttttaatgtttatcaTAGTTGTCTTTTCTAATGAATGTAATTTATGCAGATTACGTTCGGATAGATGTTTCTCGTGCTTAGTTGTAATAATAACGCAGAAATTGTCCTaaaattatgagaaaaataGACACATTTTGGCAGGTTTcgtacacaaaattaaaaaaaaatgatgaccCAGATATTTCTTAATGAGTTTCCCCTATagatacaataaataattattactgtaaagagcatttatatatattcatattgtaCAAActgtgaaggttttttttttttcgattattgcttttggtttgtgttttgtgatgttttgcaCAAGTGCTTTATATATGGAACATACATCCATGTTGGTGAATTCAAATAGAAGCAGCTTAGTACTCGACATGAATGTGTACGGTATCTGAACTGGATACAACTTTTACGTCATTAGAAATACGTTCTTATTTCTGAAGCCTCTGGTGGTTTCATGTTATGTACACTCATTTGTTCTGTAAGCAAAATGTGGTTCATATTAAAGAAATTTAAACAA
>XM_043263953.1
ATTTTGGGCTGGCGATGGTTGGCGGTAGATGCACGTGTGGGGAGGTTTAAACTGTGAAGCACGGAATTATGGAAGCTGTTCGTGTGATGGAGTAAAGCAGCAGCGACTGTCATCATCGTCTAATCCCGCGGCGTTAAGAGGCTCAGTGTTTAAACTCCTGCTGCTCTCTATCTCGCGATGGACGCAGGAGACATTTCCGATCTGGACCTGGACAAATACGACGCCGACGAGCAGGTCAAAATCATCTGCCTCGGAGACAGCGCTGTGGGCAAATCCAAGCTTATGGAGAGATTCCTTATGGATGGATATCGTCCTCAGCAGCTCTCCACATACGCATTGACTCTCTACAAATACACCACCACTATCAATGGGCAAACTGTCCTGGTTGATTTCTGGGATACTGCAGGACAGGAACGTTTTCGAAGCATGCACCCGTCATACTACCACAAAGCCCACGCCTGTATCATGGTGTTTGATGTCCAGAGGAAAATCACATATAAGAACCTCCCAATTTGGTACAAAGAACTGCGAGAGTACCGGCCAGAGATTCCCTGTCTGGTGGTCGCTAACAAGATCGATGCTGACATGAAGGTCACCCAGAAGAATTTCAACTTCGCTAAGAAACAAGGTCTGCCCTTCTACTTTGTATCTGCTGCTGATGGGACCAATGTGGTCAAGGTGTTTAAAGACGCCATTCAGATGGCTCTGTCCTACAAGAGGAACTCCAACGACTTTATGGATGAAGTTATGAGGGAGCTAGAGAACTTTGATTTAGACAGTAAAGAAGAATCGTCTGATAAAGATGAGGAGACACAAGAGGGAAAACCAGACTCGGCGTGATCACGTCACGTTCTCCATCCATCGTTCTCTCATTCTCATTCTCTGCTGCTCCCGCACTTCTACTGATGAGTTCCTCAGATCATGGCTGTCCTCCCACCGTCCTGAGCTGCTACTCTACCTCACACCACTCAAAGCGTGTCTCTTCATCAAATAAATTACGATTCTGTGAATGTACAGCTGATTGACCTGATAATGGAATCACAACGCACTCAGATTTGATGCTTATTGTGCAGATGTAGTAAAAGCACTCTGTCTGGAACGTGAAGCTTTGTGCCGAATgtaacatgaaatatttttaaaaataatttaatagttGCACATTTCAAGGAATTTGTACCAGTATCGGTAAACTACTTGATCTTTTTGCAAGGGTAGTTAAATTATactgttctttaaaacatttaatacatttttattagtgtaaAAGTTTATGTCCACGGTATTTGCCAACTAAacagatttttatattaaaagtgatttgttGCAAGCGCATCAGAGCGCAGGACAAGACTCTCCTCGGGGACGGATGAGAAGACAGCCATGACACAAACTCAGTGCAGCGGACGAATGAGTGTTTGTGTGGATGTGAAAACCAGAGCAAAGAAACAGCAGAGACCGCTCCGGACGATCACAAGCCTGCCGGGTTACAGTTCAGGCTGTGAAACACTGTCTCGAAACGATACACTTGAAAATGTGCAGCTTTCAGTCTTTGGTAAAGCTTTCATGTGCCACATCTGCATGCAGCTGTCTGACGAGCTGTGGAAGTTCAGGAGTGCAATGTCACGTTACAACAAAACGGTCCCATATTTTTAAGTActgattataaatgatttaagttttaatgtttatcaTAGTTGTCTTTTCTAATGAATGTAATTTATGCAGATTACGTTCGGATAGATGTTTCTCGTGCTTAGTTGTAATAATAACGCAGAAATTGTCCTaaaattatgagaaaaataGACACATTTTGGCAGGTTTcgtacacaaaattaaaaaaaaatgatgaccCAGATATTTCTTAATGAGTTTCCCCTATagatacaataaataattattactgtaaagagcatttatatatattcatattgtaCAAActgtgaaggttttttttttttcgattattgcttttggtttgtgttttgtgatgttttgcaCAAGTGCTTTATATATGGAACATACATCCATGTTGGTGAATTCAAATAGAAGCAGCTTAGTACTCGACATGAATGTGTACGGTATCTGAACTGGATACAACTTTTACGTCATTAGAAATACGTTCTTATTTCTGAAGCCTCTGGTGGTTTCATGTTATGTACACTCATTTGTTCTGTAAGCAAAATGTGGTTCATATTAAAGAAATTTAAACAA

Function

symbol description
rabl2 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system. Orthologous to human RABL2A (RAB, member of RAS oncogene family like 2A) and RABL2B (RAB, member of RAS oncogene family like 2B).
rabl2a Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system.

NR:

description
PREDICTED: rab-like protein 2B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07931 RABL2; Rab-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263951.1 True 2690 mRNA 0.41 9 20667334 20671837
XM_043263952.1 False 2346 mRNA 0.41 9 20666753 20671837
XM_043263953.1 False 2211 mRNA 0.41 9 20667344 20671837

Neighbor

gene id symbol gene type direction distance location
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding upstream 8930 20654532 ~ 20657823 (+)
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding upstream 13083 20648300 ~ 20653670 (+)
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding upstream 33117 20629743 ~ 20633636 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding upstream 48573 20609937 ~ 20618180 (+)
syt1b syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864 coding upstream 101447 20561835 ~ 20565306 (+)
arsa arsa,LOC107710387,LOC107599918,LOC107560065 coding downstream 256678 20928515 ~ 20933433 (+)
chkb chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153 coding downstream 291291 20963128 ~ 20969701 (+)
LOC122362691 LOC107719968,LOC107671151,LOC101886608 coding downstream 298255 20970092 ~ 20972842 (+)
cpt1b cpt1b,LOC107686536,LOC107599889,LOC107671150,LOC107710383,LOC107559523 coding downstream 301678 20973515 ~ 20980699 (+)
impdh1a impdh1a,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC107671158,LOC108442450 coding downstream 464969 21136806 ~ 21154598 (+)
LOC122363025 NA non-coding upstream 19045 20641765 ~ 20647708 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding upstream 77890 20586051 ~ 20588863 (+)
G127860 NA non-coding upstream 94443 20562083 ~ 20572310 (+)
G127785 NA non-coding upstream 282995 20325330 ~ 20383758 (+)
LOC122362840 NA non-coding downstream 198038 20869875 ~ 20887115 (+)
G127935 NA non-coding downstream 222940 20894777 ~ 20937442 (+)
G128148 NA non-coding downstream 408932 21080769 ~ 21081291 (+)
G128149 NA non-coding downstream 456716 21128553 ~ 21129033 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding downstream 490049 21161886 ~ 21162751 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 25694 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 66234 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 110126 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 117396 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 573152 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1729107 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1762969 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2785263 23457100 ~ 23736848 (+)
G128858 NA other downstream 3777928 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3912008 24583845 ~ 24588337 (+)

Expression


Co-expression Network