cfap45 (cfap45,LOC107758640,LOC107549265,LOC107717174,LOC107596892)


Basic Information

Item Value
gene id cfap45
gene name cfap45,LOC107758640,LOC107549265,LOC107717174,LOC107596892
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 372142 ~ 383071 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264009.1
GCCCACTATTCACTGGCTGTAACCCTAGTAACTACGTCTCTATGGAAACGTCCACAACAAAACACTGCTGTAGTAACTGTGGTCAATACTCGTGTTACTTTCCATTATTTGAAGCGGTTCCTAAACACcgtttttaacagtatttatatCCCAGTCATAACGTCTGCCAGCTTTTTCACTAAAGCTCAAACAAAATGCCTCAAAGCGCCACGTCTTCATGTGGAAAGCAGTCGGGCAGCAGTGCTTTCACTCGACGCTATCGCACACGAGCCCTTACCTCTCATGTGGACGAGACCCTCTTTGGGACACCAAATCAGCATTCTGCTGGTGATATGAAAGACGACGCAGAAGGCGGAAGCGTGAGACTGAGGACGCGCTCTGCTCCTGCACCCGAAGAGCCACATTTAGAGACCGTGCGCATCATCACTAAAGACCTCATCAGGGATCTCAGAATCCCAAAAGAGGACCCATCTGGGCAATCTGTCATCCTGTCTTTGGCTGAATTCAGGCGAATCAAGGTAGAGTCTCATGTTCCTAGTGTGGAGGAGAAGGCAGCTGCACTCCAGACCCAACGCCAAGCCCGTGAAGAAGCAATGGATGCTGCAGAGCAGAGAAAAGCACAGATGCGTCAGGCGGACCTGTCTCGGCAAAAGAATCAGAACCTTAGTGAGCTTGAAGCAGAGGCAAGGGACCCTCAATACCTGTTGGAACGGGCGAACGCCCTAAGAATGGAACAAGAGGACGAAGTCAAGAAGCTTAATGAGTTAATTCAGCAAGTGCAGTGCCATGTTGTCCGAGATGCACAAATTCAGGAGAAGAAACAGAACCGTGCAGAGTggcaggaggaggagaaaagaCTGGATGCCATGATGGAAGTGGAGCGTCGCCGGGCCTTAGAAACACAGGAACAAATTGAACAGCTACAAAAGCAGCAAAGGATTGATGGGAAGATGTGTATCCTGGATCAGATCCAGATGCGTCTGGAGGAGAAAATGCTACAGGAGGAGTTGAAGGAACAGGAGGGTCAGCAATTGCTGGAAAACATGGAGAGGATGCAGATGGAGGAGCTCAAgGCCATTGAAAGAAAGCAGGAGGAGCAGAAGAATTTGCTTCAAGAGATTCAGAAGATAAATGAGGAGAATTTGCTCGCAAAGAGCAGAAAAAAAGAGGAGAGATTAGCAGATCTGCGAGCTGTAGAGTATACACGTAAGAAATTGGAACGTGAGGCAGAATATGAAGCTGAGCAGATACGAAtcaagaaagacaaagagaaagaagtgGCACGACTGAGAGCTCTTCAAGAAAGGGACAGAGACCATAAAGCTGAGCAGGATGAGATCAGGGCACGGAGGAACCAAGAAGCGGCTGCAAGGgaatggagaagaaaagaaaaagaacagacTCGGAGAAAGCTGGAAGTGGAAGAGAAGCTGAAGGCTGCTCGTCTGGAGCAGGTCACTCACAAGGAGCACATGCTGTCCATTGAAGCTGGGCGGAGAGCAGAGTTCGAGAGGGTCCTAAGGGCACAGCAGGAGCTCATTGAGAAAGAACGAGAAAAAGAGGAGCAACAGCATCAAAAAATCCAAAGGCACGCCGAAGCAGTGAGGCAGCAGGTACGGGAGAGAGAGGTGCAGGCCGTCACCCAGCGCAGAGAGCTGTTCCGAGAGGGTGAGCGGCTGGAAGAAGAGGCACGCAACCGCAGAGCACGCCTGGACGAGATTAAAGAAAAGAAGCTGAGGGAACTCAAGGCAGCTGGGCTCTCAGACAAGTACTACAAGGAAGTGGAGCGTAAGGTTCAACACCTTCCAGCTCTACTAAACTGAGAAATGGAAGAGATCGACATAAAGTACGTTTGTTGTCTGGCTTGACCCATGAACTCCCCACGTATATTTTGCCAGTGGATTTCTGGAAAAGATTGcatcaacattttaaaaggataaacaaaatacaaGTCAAGGCATGTATGGTTTGTGGTCTGTGGCTGACATAATAACTACTGTAACTCCAAGTATGCCAAAAGTGCACTGCTAAATCTTCTGACGAGATTGAAggacaaactaaaataattaaatacttcTGTAATCAAATATGAGctgttttgtaatataaaagaaCGGATGACAGGTGCTTTAATCATCACATAATCAATGACCCTCTCAAGTTTTCCATGGTCACATGACATCAAATGAACGCTTACATGGCTCCTATAGTACAGGTAAAATACTAATCACTACATGCTTTAGTAGGCAGAAGTAGActtcaaatgcaaatgtaatacaATTAAACACTATTCTTTTGAACAGTGTAAATTAGTTCTAAGAGGTTCCTATTGTACTATGTATAATACCTTCTAGTTGCATTCCCACAGAAAAGGTTTATGAAAGCCTCGGATCACAAATGTAACTGCTGTACCTTTTAATGTACTTTCCTTTTATGGGGCCTTTAGTTAAATTGAGATAAAAATGGGTACAGCATGACATAATACATAAGtcattatatacagtaaatgaacaacAACCCTGACTGTAAACCTGACTGTCTGAATAGCAAAGACAAATGTTTTAACTGGGTTTTTCAATATATCAACCTGTCTGTATCACAAATGAATCCAGGCAGAGGTGGAGGGCGAAATCAAACATGAGTTGTAATCGAATAAAAGATGAACAACATGGAACACACAAGAACATGGAAAGATATAAAACTGGTAAAAGAGTCTCTTCTAATGACTAGTGAAACAGAAGATGTGTGTAAGCTGGGtaataactgaaatattatcatgaaacactgttgacccatccctcaTACCTTAAAccaccctaaacctacccataccacctaATCTTACCTGTATTTAACCTCGATAGCAGTAAGtgttttgtaatacaatatgaacacggAGTAGTCAAGGCCACTTAATATGAAGTGGGACCATTgcaattctgtgtgtgtgtaagtcttGCTGTCTCTTCTTTAAACCCTACAGATAGTCACACCTACTGTTAAGCATTTTATAcgaaatgcattacaaaaatttttaatttgagctCTATCTTCATATctatctttaaattaaaatgtgaatactCACCACCCTGGGTCATATTACCatgaacaataaaattaaatgtggtGACCA

Function

symbol description
cfap45 Predicted to act upstream of or within intracellular protein transport. Is expressed in forerunner cell group. Orthologous to human CFAP45 (cilia and flagella associated protein 45).

NR:

description
cilia- and flagella-associated protein 45

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264009.1 True 3136 mRNA 0.44 15 372142 383071

Neighbor

gene id symbol gene type direction distance location
LOC122362472 si:ch211-234p18.3,rasgrf1,LOC107690363,LOC107691143,LOC107709805,LOC100708145,LOC102298753 coding upstream 17257 333483 ~ 354885 (+)
LOC122322910 NA coding upstream 164016 207287 ~ 208126 (+)
LOC122322909 NA coding upstream 166541 204768 ~ 205601 (+)
tbrg1 tbrg1,LOC107549267,LOC107669777,LOC107717176,LOC107676756 coding downstream 2393 385464 ~ 393966 (+)
c18h19orf54 LOC107549270,LOC107748228,LOC107669776 coding downstream 63630 446701 ~ 451209 (+)
rasgrp4 rasgrp4,LOC107758090,LOC107676755,LOC107662146,LOC107758237 coding downstream 165746 548817 ~ 566665 (+)
ppp1r13l ppp1r13l,LOC107757772,LOC107758239 coding downstream 197675 580746 ~ 596414 (+)
tmem91 tmem91,LOC107757682,LOC107758240,LOC107560149,LOC107662142,LOC107676753 coding downstream 232518 615589 ~ 638864 (+)
G123257 NA non-coding upstream 9106 361393 ~ 363036 (+)
G123282 LOC107676751,LOC107758351 non-coding downstream 81033 464104 ~ 476401 (+)
G123301 ryr1b,LOC107676751,LOC107596888,LOC107758351 non-coding downstream 128227 511298 ~ 512632 (+)
G123312 NA non-coding downstream 146327 529398 ~ 529619 (+)
G123422 map3k10,LOC107560156,LOC107554498,LOC107758231,LOC107668271,LOC107756783 non-coding downstream 467582 850653 ~ 919977 (+)
G123472 yap1,LOC107758259,LOC107662128,LOC107746561 non-coding downstream 640034 1023105 ~ 1051430 (+)
G123243 NA other upstream 263310 108369 ~ 108832 (+)
LOC122362993 LOC107758246,LOC107662138,LOC107657475,LOC107757244 other downstream 431680 814751 ~ 823675 (+)
tmem123 NA other downstream 662123 1045194 ~ 1054735 (+)
G123568 NA other downstream 1182355 1565426 ~ 1571931 (+)
G123664 NA other downstream 1618715 2001786 ~ 2002290 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other downstream 1824128 2207199 ~ 2240260 (+)

Expression


Co-expression Network