wnt2 (wnt2,LOC107708232,LOC107738769,LOC107660945,LOC107596948,LOC106561551)


Basic Information

Item Value
gene id wnt2
gene name wnt2,LOC107708232,LOC107738769,LOC107660945,LOC107596948,LOC106561551
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4215421 ~ 4223120 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264072.1
TACACACCACGCTCCGCGATGCTCTGACGCTCGACTCACTCGCGTCGCGTCACTCCAGAGGTTTCTGATCCGGGAGAGCGAACATCCGCCTCGGCGCTCGATGCACTCCgcgtttcatttatttgctgttaAACCGAAGACGAGTGCCTGAACGAATGAGTATCGATACAAATTTTAGAATATGAACTTTTTGCCAAGTGGAATATGTTTTTATCTGTCCGTGGCAATTTGCTGGTTCACATCAAGGGTCGACGCATCGTGGTGGTACATGGGCACTCTTGGATCGCAAGTGATGTGCGACAACATCCCGGGCTTAATTAACAAACAACGCCAGTTGTGCCGCCAGCATCCCAAGGTGATGCAGGCTATCGGAGCCGGAATTAAAAACTGGATCGGAGAATGTCAGCACCAGTTCAGAAACCACCGCTGGAATTGCAATACCATGGCGCGCGAGCACAATCTTTTCGGAAGGCTTTTGCATCGAAGCAGTCGCGAGGCCGCCTTTGTCTATGCCATTTCCTCAGCAGGTATGGTCTACACCTTGACCAGGGCCTGCAGTCAAGGTGAACTAGAAAACTGCTCCTGCGACCCTGGAAAAAAGGGCTCTTCTCGAGATGCCAAGGGAGCTTTCGACTGGGGTGGCTGCAGCGATCACGTTGACCATGCGATCAAGTTCACTCAGGTCTTCATAGACGCCAAGGAGAGGAAGGAGAGAGATGCACGAGCGCTCATGAACTTGCACAACAACCGTGCAGGGAGGAAGGCGGTGAAGCGCTTTATGAACCTTGAGTGTAAGTGTCATGGTGTCAGTGGCTCGTGCAATGTACGAACCTGCTGGTTAGCCATGGCAGACTTCAGGCAGACCGGTGACTATCTCCGCAAAAAGTACAACAATGCCATTCAGGTGGTGATGAACCAGTATGGAACCGGCTTCACTAGTGCCTACAGGATGTTCAAGAGGCCTACCAAAACTGACCTTGTCTATTTTGAAGACTCACCTGACTACTGTATATGGGACCATGATTCTGGTTCTGTGGGCACAGGTGGGCGAGTGTGCAACCGTACGTCGCGTGGGGCAGACAGCTGTGAGGTCATGTGTTGTGGGCGGGGCTATGACACGTCACGCGTGAGCCGCACCACCAAGTGTGAGTGCAAGTTCCACTGGTGTTGTGCTGTTCACTGCAGGGACTGCCAAGAGGAGGTAGATGTGCATACCTGCAAAACCCAGTCATGACCCCACCACCCCTGCACTTCGGTTACCTTCCAGAGTAAAGATCCCATCTCAAACCTTTGACATTGTAAACTGCTTTTCTGTTGCAAATTAGATCAAACACAGATGACCGGCAACTTTAAACCTATGCAGATTTGTCGCATCACAACTTTTTGAAGTCTTGTGTAGTTTTACTTGCTGTTTTTCTCCCATCGTAACACTCATATTTATTACAGCTTTGGAATGtttatctttaatgtatttcatattttgaacTGTAAATACAAACtctatgtaatttaaaataaaacgtatgtTAT

Function

symbol description
wnt2 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within hepatocyte proliferation and swim bladder development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including nervous system; optic cup; optic vesicle; otic vesicle; and swim bladder bud. Human ortholog(s) of this gene implicated in breast carcinoma; hepatocellular carcinoma; and urinary system cancer. Orthologous to human WNT2 (Wnt family member 2).

NR:

description
protein Wnt-2

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0048794 swim bladder development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0072574 hepatocyte proliferation biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264072.1 True 1530 mRNA 0.49 5 4215421 4223120

Neighbor

gene id symbol gene type direction distance location
asz1 LOC107660944,LOC107596949,LOC107672320,LOC107708231,LOC107583750 coding upstream 1424 4200381 ~ 4213997 (+)
cttnbp2 cttnbp2,LOC107660942,LOC107583748,LOC107672177 coding upstream 38303 4136996 ~ 4177118 (+)
synm synm,LOC107738686,LOC107660941,LOC107596944,LOC107583746 coding upstream 91717 4114968 ~ 4123704 (+)
igf1ra igf1ra,LOC107596941,LOC107672255,LOC107738680 coding upstream 107223 4028238 ~ 4108198 (+)
anpepa LOC107738684,LOC107694949,LOC107596937 coding upstream 200880 4007475 ~ 4014541 (+)
bcl2l13 bcl2l13,LOC107738690,LOC107708230,LOC107686320,LOC107672257,LOC107583859 coding downstream 1660 4224780 ~ 4237212 (+)
dennd11 LOC107738692,LOC107708228,LOC107686315,LOC107672298,LOC107583753 coding downstream 23428 4246548 ~ 4253292 (+)
ighmbp2 ighmbp2,LOC107738695,LOC107596955,LOC107708224,LOC107583861,LOC107672301 coding downstream 33900 4257020 ~ 4263711 (+)
LOC122363152 fam180b,LOC107596959,LOC107738700,LOC107708214 coding downstream 56970 4280090 ~ 4281937 (+)
paqr5a paqr5a,LOC107686313,LOC107596958,LOC107738698 coding downstream 64327 4287447 ~ 4291461 (+)
G124295 NA non-coding upstream 31770 4182733 ~ 4183651 (+)
G124294 cftr,LOC107583749,LOC107738689,LOC107596947,LOC107672176,LOC107708216 non-coding upstream 33030 4181385 ~ 4182391 (+)
G124293 cftr,LOC107596947,LOC107738689,LOC107708216,LOC107672176,LOC107583749 non-coding upstream 34132 4180426 ~ 4181289 (+)
G124292 NA non-coding upstream 36065 4179040 ~ 4179356 (+)
G124161 NA non-coding upstream 79821 4135383 ~ 4135600 (+)
G124427 NA non-coding downstream 238725 4461845 ~ 4462124 (+)
G124425 NA non-coding downstream 253427 4476547 ~ 4477879 (+)
LOC122323045 NA non-coding downstream 464914 4688034 ~ 4691944 (+)
G124497 NA non-coding downstream 521640 4744760 ~ 4745307 (+)
G124498 NA non-coding downstream 522483 4745603 ~ 4745835 (+)
nrn1la LOC107726468,LOC107694939,LOC107583849,LOC107596927,LOC107733575,LOC107672183 other upstream 471665 3719888 ~ 3743756 (+)
tmem170a tmem170a,LOC107596918,LOC107583727 other upstream 660731 3511957 ~ 3554690 (+)
chd2 chd2,LOC107690375,LOC107715217,LOC107693036,LOC107715589 other upstream 1753631 2410733 ~ 2461790 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other upstream 1896281 2301758 ~ 2319140 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other upstream 1975161 2207199 ~ 2240260 (+)
LOC122322928 megf11,LOC107596974,LOC107686294,LOC107672222 other downstream 536508 4759628 ~ 4795836 (+)
G124548 NA other downstream 848525 5071645 ~ 5110633 (+)
G124553 NA other downstream 916370 5139490 ~ 5140671 (+)
G124577 NA other downstream 1002688 5225808 ~ 5226057 (+)
G124580 NA other downstream 1005443 5228563 ~ 5229946 (+)

Expression


Co-expression Network