cers3b (cers3b,LOC107559674,LOC107733272,LOC107662883,LOC107686553,LOC103029792)


Basic Information

Item Value
gene id cers3b
gene name cers3b,LOC107559674,LOC107733272,LOC107662883,LOC107686553,LOC103029792
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20532906 ~ 20538618 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264099.1
TTTGTTGGGGGGTTGAGGTATgcagtgaaagtgtgtgtgtgtgaaagagagagagagtgagttcGCTACCTAGCGGATTCATCAGGACTGGGCACAACTCTGGAGGATCTACTATAAGGTGTGTGTGCACAGAATTACAACAGAGAAAGCAGGAAAACAGGAGGACAAAGAAGAAAAGGACAAATCTGggCGATGCTTAGTGAGTGGTTTTGGTGGGATCGGCTGTGGTTGCCGAGGCCGGTGACGTGGGCGGACCTACAGGACAGTGAGGGGCGTGTCTACGCCCGTGCGTCCCATTTGTACATCATTTTACCTGTAGCAGTCCTGCTGCTAGGCTTAAGAGCTTTCTATgaaagACTGATCGCAGTGCCACTCGCTCAGGCTCTCAGGGTTAAAGACAAAATTCGCAAGAGAGCGTCACACAACCCTGTACTtgaaaaatactacaaaacacATTCTAAACATGCAAAACAGGCAGATATAAAAGGTGTGTGTAAAAAGTTGGGCTGGTCGGAGAGGCAGGTGGAGCGCTGGTTCCGCAGACGGAGGAACCAAGACAGACCCGGAGTACTGAAGAAATTCAAAGAAGCCAgTTGGCGGTTTGCCTTTTATCTGTGTTCTTCTTTCGGAGGAGTGCTGGCTTTACATGATAAAGCATGGTTTTATGATCTACGGGAAGTGTGGGCAGGATTTCCCAAAcagtcaCTGCTGGATTCTCAGTACTGCTATTACATCACTGAGATGAGTTTTTATGGTTCTTTACTGTTCAGTGTGGCTGCAGATGTAAAACGTAAGGACTTTAAGGAGCAGTTGGTCCATCACTGGGCCACACTAACGCTGTTGTCCTTCTCCTGGTGTGCCAACTACATCCGCATTGGCACACTGGTTATGCTGGTGCATGACACATCCGATGTCCTGCTCGAGTCTGCTAAGATGTTTAACTATGCTGGATGGGAGACAACCTGCAACAGTATCTTTGTGGTGTTCGCGCTGGTCTTCATGGTAACCCGACtcattatttttcctttctggctGATCCACTGTACGTGGGTGTATCCTCTGGACCAGTTCGAACCTTTTTTCGGCTATTATTTCTTTAACGTCATGCTTGTGGTTCTGCTGTTATTGCACATGTTCTGGGCTTCCCTGATCCTCCGCATGGtcaaaaagtttctttttgGCAAAcTGAAGGGCGACGAGCGAAGcgatgaagaggaggatgagggtTCTGAGGAAGACTACACATACACCTACTCTAATGGATCTGGGAACGGACTCTCTAATGGCCATTTACACAGAGAGAGCCCTTCCACAAATGGACACAAATAGCCTCATGATgccatgcatgcatatatgtcCATATTGGACGCATGATTCATctgtgaattttcttttttacacagCCTTTCATATTAAGGTTTGTATATGTACAGATATTATGATAGATAGAATAAATCAGTACAAATTGTTATTCAAGTTAACAGTGGTTTATGTTATGAATTAAAACTTGTTAGCATGTGCCAGTCCAATATGAAGTCTCTTCTCATCAAGGCTGCTTAGTTTTGaccagaaatacagtaaaattgtgaaatatgaatccatttataatgttatttattcctgtggagaaaagctgaattgtcagcatcattactcatcatcttcaatgtcacatgatccttcagaaatcat

Function

symbol description
cers3b Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; otic placode; otic vesicle; pectoral fin; and pronephric duct. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 9. Orthologous to human CERS3 (ceramide synthase 3).

NR:

description
PREDICTED: ceramide synthase 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264099.1 True 1692 mRNA 0.44 11 20532906 20538618

Neighbor

gene id symbol gene type direction distance location
LOC122323072 LOC107559655,LOC107686551,LOC107733270,LOC107662882,LOC107736185,LOC563500,LOC107600544 coding upstream 1327 20506031 ~ 20531579 (+)
vwf vwf,LOC107600553 coding upstream 28532 20471101 ~ 20504374 (+)
si:dkey-88e18.2 LOC107686617,LOC107733267,LOC107560122 coding upstream 87539 20440144 ~ 20445367 (+)
LOC122363067 LOC107559703,LOC107686559,LOC107662909,LOC107576256 coding upstream 110577 20414016 ~ 20422329 (+)
dnaja2b dnaja2l,dnaja2,LOC107735561,LOC107705812,LOC107686561,LOC108438176,LOC103026191 coding upstream 161309 20364731 ~ 20371597 (+)
syt1b syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864 coding downstream 23217 20561835 ~ 20565306 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding downstream 71319 20609937 ~ 20618180 (+)
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding downstream 91125 20629743 ~ 20633636 (+)
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding downstream 109682 20648300 ~ 20653670 (+)
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding downstream 115914 20654532 ~ 20657823 (+)
G127785 NA non-coding upstream 149148 20325330 ~ 20383758 (+)
G127800 NA non-coding upstream 157071 20373854 ~ 20375835 (+)
G127780 NA non-coding upstream 251611 20256712 ~ 20281295 (+)
LOC122363139 NA non-coding upstream 308322 20221304 ~ 20224584 (+)
G127766 iqsec3b,LOC107564909,LOC107705799,LOC107735425,LOC107662846,LOC108413205 non-coding upstream 317675 20202748 ~ 20215231 (+)
G127860 NA non-coding downstream 23465 20562083 ~ 20572310 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding downstream 47433 20586051 ~ 20588863 (+)
LOC122363025 NA non-coding downstream 103147 20641765 ~ 20647708 (+)
LOC122362840 NA non-coding downstream 331257 20869875 ~ 20887115 (+)
G127935 NA non-coding downstream 356159 20894777 ~ 20937442 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 439305 20067678 ~ 20093601 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other upstream 517200 20003004 ~ 20015706 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other upstream 1244350 19269611 ~ 19288556 (+)
G127500 NA other upstream 1691371 18730690 ~ 18841535 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other upstream 1880742 18646362 ~ 18652164 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other downstream 7374 20545992 ~ 20549357 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other downstream 12530 20551148 ~ 20556627 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other downstream 51066 20589684 ~ 20600519 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other downstream 96227 20634845 ~ 20641059 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1862326 22400944 ~ 22411957 (+)

Expression


Co-expression Network