si:dkey-88e18.2 (LOC107686617,LOC107733267,LOC107560122)


Basic Information

Item Value
gene id si:dkey-88e18.2
gene name LOC107686617,LOC107733267,LOC107560122
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20440144 ~ 20445367 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264111.1
CATATCACGGTTCATTTACAGCGGATACCGCAAGTAACACatacaatcaaaaatgaaatgaaatagtaTTTACATAATCCAGTGTGGGCTATAACTCAACTTCTTTTTATTCACTAGTCACTCTTAACAATCGTTAGTTTATTTAAAGAGCCCACTGTACTCTACTGCGCTGTTAAGATCGCTAAATGTGAACTAGTGAAACTGCTCTATAATGGGAGTGATGACAGAGAGGGGAAAGAGTAGTTCAGAAGTCGTTTTTTTAACACTCTGAGATCGAGGGGAACTCTTTCTAAGAATGAAAAGACCCACGGCTTACTTGCGAGTTGTCGTGTGTTGGGAAGAGAATAAAAAGCGCACAGGCACAGACCCCAGGAGACGACGATCACACGCTCCGGAGACTTCAGCGCTGAATTTGACGCAACAGCAGCGAAGATGGTTTGGTTGATGAAGTTCAtccttttcttctgttttgCCATAACGAGGATGTCTCGCGCTTTTTCCCAACTTTTTCCTGAGAAATTTGTAATTGCTGAGAGAAAGGCAAACGTTACGCTGACCTGTAAAACAGATAAAGACATAATCACATGGAGACACGAGGATGCAAATAGCATAGAGAACATAATGCAATCGCAAATTCAAATCCTCAATGGGCGGGATTTGACCATGATTGACCTGCAGGAAGACCTAACCGGGAATTACACCTGCTGGAGTGATACGGGTCTTGAAGACTACACCTATCTCCTGCTGGACACATCTAAAGAAGCTACAGctttcagtatcAGCTGCACAGCCGAGACGTTTTCCTGCTCTGAAAAAATCAAATGTTCCTCGACCTCAGATGAACTTACAGACGAATTTGCCTTCAGATTTCGCAATGCGAGGGATAACGGTGACTGGGTGTCACAGTCcgtggatggggttttttttctcccacatTCCACCAATTCATACTGTGAAGAGTCCGAGCGGCTGCGGATATCAGGGGAGGCGGTTTCCGCATGCTGCTATATGAAAACTGATTACAGCTTCTACCTACGAGACATCATTAAGCCAGCAAATCCAAACATTTCGAACTGCACTATACAAAATGAGGGGAGTGACAATCAAATCATAGAATTAGAGGTGGAGCCTCCCTCGACCTGGCCGGAGCCCCACAGTTTCTTTCCTCTGAAGCATCAGCTCGAGTACGAGATAAGGCACGACGGAAAGCTGATGCGTCAAGAATGGGAGGAGAGGTCAAAGATCAAAGTTAAGGGCTCCATCACAAAACTGAGGGTCCGCTGCAGAGACCTGCTGCTCCTCTCTCAGTGGAGCGAATGGAGCGATTGGAAAAACGTAAACTAGCAATTTAAACCTCCCTATCTCCTGAACCCTTTATTTATATCTCCTGTCCCATTTTCCGAAtccttatttattatttgtatacgCGTTAATGTGTCATGTCGTCGGTTACGTGTGACTGTTACGTGCTGACTGTATTACACCTGTGTCATATTAAAAACCTTAGCTCCTC

Function

NR:

description
interleukin-12 beta chain precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264111.1 True 1513 mRNA 0.44 7 20440144 20445367

Neighbor

gene id symbol gene type direction distance location
LOC122363067 LOC107559703,LOC107686559,LOC107662909,LOC107576256 coding upstream 17815 20414016 ~ 20422329 (+)
dnaja2b dnaja2l,dnaja2,LOC107735561,LOC107705812,LOC107686561,LOC108438176,LOC103026191 coding upstream 68547 20364731 ~ 20371597 (+)
lmf2a lmf2a,LOC107564898,LOC107686567,LOC107600131,LOC107662891,LOC107735523,LOC107705770 coding upstream 118944 20311779 ~ 20321200 (+)
c2cd5 c2cd5,LOC107686569 coding upstream 129011 20286465 ~ 20311133 (+)
b4galnt3b LOC107705801,LOC107686572,LOC107564911,LOC107735491,LOC107662894 coding upstream 161648 20259769 ~ 20278496 (+)
vwf vwf,LOC107600553 coding downstream 25734 20471101 ~ 20504374 (+)
LOC122323072 LOC107559655,LOC107686551,LOC107733270,LOC107662882,LOC107736185,LOC563500,LOC107600544 coding downstream 60664 20506031 ~ 20531579 (+)
cers3b cers3b,LOC107559674,LOC107733272,LOC107662883,LOC107686553,LOC103029792 coding downstream 87539 20532906 ~ 20538618 (+)
syt1b syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864 coding downstream 116468 20561835 ~ 20565306 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding downstream 164570 20609937 ~ 20618180 (+)
G127785 NA non-coding upstream 56386 20325330 ~ 20383758 (+)
G127800 NA non-coding upstream 64309 20373854 ~ 20375835 (+)
G127780 NA non-coding upstream 158849 20256712 ~ 20281295 (+)
LOC122363139 NA non-coding upstream 215560 20221304 ~ 20224584 (+)
G127766 iqsec3b,LOC107564909,LOC107705799,LOC107735425,LOC107662846,LOC108413205 non-coding upstream 224913 20202748 ~ 20215231 (+)
G127860 NA non-coding downstream 116716 20562083 ~ 20572310 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding downstream 140684 20586051 ~ 20588863 (+)
LOC122363025 NA non-coding downstream 196398 20641765 ~ 20647708 (+)
LOC122362840 NA non-coding downstream 424508 20869875 ~ 20887115 (+)
G127935 NA non-coding downstream 449410 20894777 ~ 20937442 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 346543 20067678 ~ 20093601 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other upstream 424438 20003004 ~ 20015706 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other upstream 1151588 19269611 ~ 19288556 (+)
G127500 NA other upstream 1598609 18730690 ~ 18841535 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other upstream 1787980 18646362 ~ 18652164 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other downstream 100625 20545992 ~ 20549357 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other downstream 105781 20551148 ~ 20556627 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other downstream 144317 20589684 ~ 20600519 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other downstream 189478 20634845 ~ 20641059 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1955577 22400944 ~ 22411957 (+)

Expression


Co-expression Network