zgc:173742 (zgc:173742,LOC107553995,LOC107684664,LOC107749320,LOC108415671,LOC106560872)


Basic Information

Item Value
gene id zgc:173742
gene name zgc:173742,LOC107553995,LOC107684664,LOC107749320,LOC108415671,LOC106560872
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23789393 ~ 23814740 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264127.1
ctATACTTGGTTCCGTTTGGTGTCGCTACCAGTTTGAAAACGCATACATCGGGTTTATACTATAGAGTCAAAGAAATTTCAAACGCACATGCCTTtgtaatacacattttaatgaatatttgttAAATCAGGAGGCAATTTTACAATCGCGGTAAATATAGCATAAGCCGGTCTATAAATTAGCAACGGACATCAAAACCTCAAATCAGACTCGTCTGTAACCACGAGGATTGGTGAAACCGCGCAATATACGTATTTGCAGGGATGGCAGAAGACTCCAGCTCCGTGAAAGCCGTGGAAAAGGAGTTAAAAGATGATCCGGGCTCGAGCGGAGATGCACACGCAGTGAAGcccaagaaaaagaaagcaaaggccGAAGGCAGGACGAAGCCTCTGCGCGGAGGGAAGGAGAAAACACACAGGAAGatGAAAACTCCTAAAGAAGAGAGCATGGACTTTGAAGAGAGAGGTGACAGAAGCTCTCAGGTGAACGTGAAGGAAGAGCCAGAGGAAGACTTTGTAACAAAAgggaaaaagaggaaaagaaaggcGGATAACACAGATGGTCCTTCTTCTTCTACCTCTGAAGTGCCTTtaccaaagaagaagaaaaacaaagctgcagaagATGGACAGGGGAACTCAGCAAaagcaaagaagaaaaaatccaaggaaaaaaaagaaaagGTGATAAAAGAGGAAGGAGGGCGTTCTGTCTCCgctaagaagaaaaaaacaaaggaagagagagaggctgcCAGGGCTCTCAAGATtaagaagaaagaagaggaagagaaacaAAGATGGAGATGGTGGGAAGAAGAGAAATATGAGGATGGAATAAAATGGAAGTTTCTAGAGCACAAAGGGCCGTATTTCCCTCCCGAATATCAACCCCTTCCAGATGATGTCAGGTTTTATTATAACGGACAGCCATTGAAGCTCAGCCTGCCAGCTGAGGAAGTGGCCCTTTTCTTTGCTCAGATGCTGGATCACGAATACACCACAAAAGAGGTCTTCCGCAACAACTTCTTTAGGGACTGGAGAAAGGAGATGACTTTGGAGGAGAGACAGCTAATAATGGATCTGAACAAGTGTGATTTTGGAGAACTCCATGCTATGCATATACAGAAAGTGGAAGCCAGGAAGAACTTGAGCAAAGAGGAGAAGTTGGTTAACAAAGAGGTCAATCAAAAAATTGTTGATGAGTATGGATATTGTGTGCTGGACCACCATCGTGAACGCATTGGGAACTTTAAGATTGAACCTCCAGGGCTTTTCCGGGGCAGAGGAGACCATCCTAAACAGGGAATGCTGAAGAAGAGGATTCAGCCTGAAGACGTCATCATCAACTGCAGCAAGGAGTCTCGTATCCCAGAACCCCCGGCTGGTCATCAATGGAAGGAAGTTCGTCACGACAACACCGTAACATGGCTAGCAAGCTGGACCGAGAATGTGCAAGGATCTTGTAAATATGTGATGCTCAATGCCAACTCCAAGCTTAAGGGTGAAAAAGATTGGGAAAAGTATGAGGTGGCTCGCAAACTGAAGACGTGTGTGGATGCCATACGAGCCCAGTACCAGGAGGACCTCAAGTCCAAACAGATGGGCACACGCCAGAGAGCCGTAGCCCTCTACTTTATTGACAAGCTGGCTCTGAGAGCAGGTAATGAAAAGGAAGAGGGCGAGACGGCAGACACCGTGGGTTGTTGCTCACTACGTGTGGAGCACATCACTTTACATGACGCGCTGGATGGGCAGGAGTGTGTGGTAGAGTTCGACTTCCTGGGTAAAGATTGCATCCGCTACTACAACAAGGTCCCAGTGATCAAAAGggttTTCAAAAACCTCAAGCTTTTCATGGAAAACAAGCAAGAAGGAGACGACCTCTTTGATCGACTCAATACTCAAGTGCTGAATAAACACCTGAGTTCCCTCATGTCAGGATTGACTGCCAAGGTTTTTAGGACATACAACGCCTCCGTTACCCTGCAGCAACAGCTGAAAGAACTCAGCAACATGAAGGATAATGCGGCAGAGAAGTTGCTCTCTTACAACAGGGCAAACCGTGCGGTTGCAATTCTATGTAACCATCAGCGGGCGCCGCCAAAGACCTTCGAACAGTCCATGGCTAACCTCCAAGCAAAGATTGACGGCAGGAAGGAGCAGCTGGACTTGGCTAAGAAAGAGCTGAAGCAGGCCAAGAAAGAAGCCAAAGGGAGCTCAGACAACAAGCTGCTCATtgtggtggagaagaagaagaaagccGTGCAGAGGTGCGAGGAACAGCTGCTGAAGATGGAGGTTCAGGCTACAGACCGAGAGGAGAACAAACAGATCGCTCTGGGCACCTCCAAACTCAACTACCTGGATCCACGCATCAGCGTGGCCTGgTGTAAGAACATGGAGGTGCCGCTggataaaatatacaacaaaaccCTAAGGGATAAGTTTGCCTGGGCTATTGATATGACTGAACACGACTTTGTGTTTTAAGCGTGGTTTGATCATTTTCCAGTTCATCTCagtattttatacaaatgttcattttaaaagaaagtgtgCATTGTTCAGTTTTTGCTGATTTGTCACATTTTATGTTGTacagtttttatattgtttgatcaaatattcAAGAAAGTTCAATAAATGTTCTTCCATTGTA

Function

symbol description
zgc:173742 Predicted to enable DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA replication; chromosome organization; and chromosome segregation. Predicted to be located in chromosome. Predicted to be active in nucleolus.

NR:

description
DNA topoisomerase I, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03163 TOP1; DNA topoisomerase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264127.1 True 2665 mRNA 0.45 21 23789393 23814740

Neighbor

gene id symbol gene type direction distance location
plcg2 plcg2,LOC107722471,LOC107738392,LOC107684680 coding upstream 484055 23289516 ~ 23305338 (+)
meak7 tldc1,LOC107587014,LOC107722463,LOC107738391,LOC107684679 coding upstream 501330 23283862 ~ 23288063 (+)
cotl1 cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015 coding upstream 512923 23271267 ~ 23276470 (+)
zgc:56622 zgc:56622,LOC107666229,LOC107738396,LOC107587047,LOC107722465,LOC107559805 coding upstream 523268 23262358 ~ 23266125 (+)
tat tat,LOC107666226,LOC107559814,LOC107587016,LOC107684657 coding upstream 530944 23250875 ~ 23258449 (+)
si:dkey-246g23.2 si:dkey-246g23.2,LOC107749300,LOC107553994,LOC107684666,LOC107670153,LOC107738383,LOC108415329 coding downstream 3313 23818053 ~ 23853275 (+)
kcng4a kcng4a,kcng4,LOC107749318,LOC107553964,LOC107738382,LOC107684667,LOC107670163 coding downstream 44296 23859036 ~ 23892165 (+)
si:dkey-246g23.4 si:dkey-246g23.4,LOC107553963,LOC107684669,LOC107749297,LOC107738435 coding downstream 85186 23899926 ~ 23911982 (+)
wfdc1 wfdc1,LOC107553961,LOC107749317,LOC107684670,LOC107583842,LOC107670154 coding downstream 101189 23915929 ~ 23927588 (+)
utp4 utp4,LOC107749295,LOC107553989,LOC107748774,LOC107583899 coding downstream 113550 23928290 ~ 23936310 (+)
G128725 NA non-coding upstream 2230 23785024 ~ 23787163 (+)
G128699 NA non-coding upstream 429836 23358451 ~ 23359557 (+)
G128696 NA non-coding upstream 452304 23335791 ~ 23337089 (+)
G128476 NA non-coding upstream 709083 23068310 ~ 23080310 (+)
G128475 NA non-coding upstream 722325 23066812 ~ 23067068 (+)
G128753 NA non-coding downstream 213749 24028489 ~ 24029817 (+)
G128770 NA non-coding downstream 241980 24056720 ~ 24063271 (+)
G128772 NA non-coding downstream 243613 24058353 ~ 24066103 (+)
G128803 NA non-coding downstream 482369 24297109 ~ 24297333 (+)
G128804 NA non-coding downstream 482869 24297609 ~ 24297845 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 52545 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 1350714 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 1377436 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3148334 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 3188874 20589684 ~ 20600519 (+)
G128858 NA other downstream 635025 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 769105 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 1480003 25294743 ~ 25309740 (+)
mt2 NA other downstream 1531652 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 2106527 25921267 ~ 26174156 (+)

Expression


Co-expression Network