syt1b (syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864)


Basic Information

Item Value
gene id syt1b
gene name syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20561835 ~ 20565306 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264151.1
ATGCATGAAGGTGACGCTCTGCTGGCTGGTCCTTCCTCATCTCCAGCATCCCCTGGACAGAACGGATCAAAGATACCCGGACCTGCGAGTTCTCCACCCACGGCGGTTCATCCTCAGACCACAACCGCAGAGAGTTTGGCTCATAGCATCAGAAGCAAGTTTCTGAATGAGCTACATAAAGTCCCATTACCATCCTGGGCTCTGGTGGCCCTCGGCTTCCTCATTGTCCTCATCACACTCAGCTGCTGCCTGTGTTTCTGCAAgaagatgatatttaaaaagaaaaagggtgggaaagataaaaatgaaaagaacaacATTAACCTGTCAAACGTGAAAGAGGATGGAACAAAACAGGCTTTTCATCACGGCAATGATTCTGATCACAAGGAGGAGGATTCTGAATCTAAAGAGCCTCCAAAACTTGGAAAACTTCACTATACCCTTGACTACAACTTCACTGACAGCGCGTTAGTTGTAGGTGTGGTTGAGGCAGAAGGTCTTGCTGCTATGGATATGAGCGGCACTTCAGATCCATATGTGAAAGTCTACATCCTCcctgacaaaaagaaaaagtttgagACAAAAGTTCACCGCAAAACACTGGATCCGACTTTTAATGAGCACTTCACCTTTAAGGTTCCATACGCAGAGCTCGGAGGAAAGACGCTGGTCATGACAGTGTATGATTTCGACCGTTTCTCCAAACATGACGCTATTGGGGATGTGAGGCTGCAGATGAACAAAGTGGACTTCAGTCAGCTCACAGAGGAATGGAGAGAACTGCAGAAAGCAGAGAAAGAAGAGCATGAGCGGTTAGGTGATATTTGCTTGTCTCTGCGCTATGTACCGACTGCTGGAAAGCTGACTGTTGTCGTTCTAGAGgccaaaaacctaaaaaaaatggatgtggGTGGCCTCTCGGACCCATATGTAAAAATCCACCTGATGCAGAACGGCAAAAggctgaagaaaaagaaaaccacaaTTAAGAAGAACACGCTGAACCCGTATTACAACGAATCCTTTAGCTTTGAAGTGCCATCTGAGCAGATTCAGCAACGCCATTGGTCAGATATGTTGGCCAATCCAAGAAGACCCATCGCTCAGTGGCACGCCCTTAAACCTGAAGAGGATGTGGATGCTGAACTGATAAAGAAATGAAGCTACGCGTGTGAGCCTTTCTGGACACGCATATTCAGTGGTTGCTTTCATTTGTGaagtttgtgtatatgtgtgcatgtttgcGTACGCTTTTCTTTCAGCCACATTTATAATCAAAAGCGCATTCATTTTTGGTACCTTGTACGAAGATAAAGGAGAAAAACTGTACTGGACAACATGAGACAGCATTTACAATGCAACTGCAAGAATAACACATTCTTGATTAAAACACAATATTCATGAGGAAATTATGTAAACCAGAATCAAATCCATTGGTATTTGATTGGTGAAAAGTAGGTTATGacattattgatattatttaaataatgtccCCCAATGAATTGTGCATAAGAGc

Function

symbol description
syt1b Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to act upstream of or within neurotransmitter secretion. Predicted to be located in chromaffin granule membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in axon; plasma membrane; and secretory vesicle. Orthologous to human SYT1 (synaptotagmin 1).

NR:

description
PREDICTED: synaptotagmin-1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264151.1 True 1519 mRNA 0.44 8 20561835 20565306

Neighbor

gene id symbol gene type direction distance location
cers3b cers3b,LOC107559674,LOC107733272,LOC107662883,LOC107686553,LOC103029792 coding upstream 23217 20532906 ~ 20538618 (+)
LOC122323072 LOC107559655,LOC107686551,LOC107733270,LOC107662882,LOC107736185,LOC563500,LOC107600544 coding upstream 30256 20506031 ~ 20531579 (+)
vwf vwf,LOC107600553 coding upstream 57461 20471101 ~ 20504374 (+)
si:dkey-88e18.2 LOC107686617,LOC107733267,LOC107560122 coding upstream 116468 20440144 ~ 20445367 (+)
LOC122363067 LOC107559703,LOC107686559,LOC107662909,LOC107576256 coding upstream 139506 20414016 ~ 20422329 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding downstream 44631 20609937 ~ 20618180 (+)
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding downstream 64437 20629743 ~ 20633636 (+)
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding downstream 82994 20648300 ~ 20653670 (+)
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding downstream 89226 20654532 ~ 20657823 (+)
rabl2 rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941 coding downstream 101447 20666753 ~ 20671837 (+)
G127785 NA non-coding upstream 178077 20325330 ~ 20383758 (+)
G127800 NA non-coding upstream 186000 20373854 ~ 20375835 (+)
G127780 NA non-coding upstream 280540 20256712 ~ 20281295 (+)
LOC122363139 NA non-coding upstream 337251 20221304 ~ 20224584 (+)
G127766 iqsec3b,LOC107564909,LOC107705799,LOC107735425,LOC107662846,LOC108413205 non-coding upstream 346604 20202748 ~ 20215231 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding downstream 20745 20586051 ~ 20588863 (+)
LOC122363025 NA non-coding downstream 76459 20641765 ~ 20647708 (+)
LOC122362840 NA non-coding downstream 304569 20869875 ~ 20887115 (+)
G127935 NA non-coding downstream 329471 20894777 ~ 20937442 (+)
G128148 NA non-coding downstream 515463 21080769 ~ 21081291 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 5208 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 12478 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 468234 20067678 ~ 20093601 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other upstream 546129 20003004 ~ 20015706 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other upstream 1273279 19269611 ~ 19288556 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other downstream 24378 20589684 ~ 20600519 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other downstream 69539 20634845 ~ 20641059 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1835638 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1869500 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2891794 23457100 ~ 23736848 (+)

Expression


Co-expression Network