slc28a1 (slc28a1,LOC107715236,LOC107690357,LOC107562130,LOC107709801,LOC107691146,LOC107567897)


Basic Information

Item Value
gene id slc28a1
gene name slc28a1,LOC107715236,LOC107690357,LOC107562130,LOC107709801,LOC107691146,LOC107567897
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 1778613 ~ 1789240 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264156.1
CTGACTATCAATCTGATAGCAACGTGCAAAGtgtcttaaataaaaacacattagtgtgtagttaattaatgataagATTTCCAAGTGGGCAGAGTATATATCCCAGCTCAAGGTTCAAGACCCAGCAGTTATCACAGAGAACGCAGAATGACGGACAAAGAAGATTTACAGTTGACAGCCGTCTCGTATGGGAATGAACAAGGTGTGGACAATCCAGCTTTTGTGAAGGAGGATAAACTAACAGATGACCTGAGTGACAGTGACAAAGAGGGGTCAGAGAAGGAGTCAAAATCATGCCTGAGCAAAGCATGCATACCCATCACGGCCACAGAGATCTTCTGCAAGACGCACTCCAAAATAATCAGATACATTGCTTTGGGAATACTTGCTGCTGGTTATTTGGCATACTTCATTGCTGCATGTTATTTAAACTTCCAGAGGGCAATTGCTTTGGTTGTCCTCACTTGTCTGGGGGTGTTTATCATTGTGTGTGAGTTGGTGAACAAGTACAAGGGTGACAGCATAAGGAGGTTCTTCAAGCCTGTGCAAAGGTGTTTCAAATCCAATGTCAGATGGATAAAGTGGGTTTTCATAGTAATTGTGGTGGGACTGCTGGTGGCATGGCTGGCAATTGACACACGAAAGCGCCCAGAGCAGCTCATCTCTTTTGGTGGTGTCTGTCTATTCATTATTGCCATATTTCTCTTCTCTGCACACAGAACCGCAGTGAGATGGAGGACAGTCTTCTGGGGACTTGGTTTACAGTTTGCCATTGGCCTGTTTATCATTAGGACAGAGCCTGGTCTTATAGCATTCGAATGGCTTGGAAAGCAAGTTCagatatttcTGGACTACACAAAAGCTGGTTCATCATTTGTGTTTGGAGACCTCATTGAAAACATATTTGCTTTCCAGGCTTTGCCTATAGTGGTGTTCTTCAGCAGTGTAATGTCAGTGCTTTACTACCTGGGTGTGATGCAGTGGATCATCTCAAAGATTTCCTGGGTAATGCAGGTAACGATGGGAACCTCCTCTACAGAGACTCTCAGTGTGGCAGGGAACATATTTGTTGGTCAgacagAAGCACCACTCTTAATTCGTCCTTATTTGAATGACATGACCAAATCTGAGATTCATGCTGTCATGACTGGAGGATTTGCCACCATTGCAGGAAGTGTTATGGGTGCATTCATCTCATTTGGGATTGATGCCTCGTCTTTGATTTCTGCATCAGTGATGGCTGCTCCATGTGCTTTAGCCATCTCCAAATTGTCCTACCcagaaactgaaaaaagcaAGTTCACATCTAAGGGTCAGATTAAAGTTGATGGCGGtggtGAACAGAATGTCTTGGAAGCTGTCAGCAGTGGCGCATCTGCATCGATAGGACTTGTGGCCAACATCGCTGCTAACTTGATTGCTTTCCTTGCCATTTTGGGGTTCATAAATGCTACTCTGAGATGGTTGGGAGGCATGGTGGGATACCCAGATGTCACTTTTGAGTTGATCTGCTCCTACGTGTTTATGCCGGTGGCCTTCATGATGGGAATTCCGTACGATGAGTCTTTTACAGTGGCTGAACTTATTGGCACTAAACTCTTCCTCAATGAGTTTATAGCCTATGAGAAGCTGTCAGAGCTGAAGAGCAACAGACTTAATGCCATGTTAGAAGATGGCGTAGATAAAAATTGGATCTCAGTGCGATCAGAAATCATCTGCACCTATGCACTGTGTGGCTTTGCTAATTTCAGCTCTCTTGGTATTGTGATTGGAGGCCTGTCCTCTATTTGTCCACCAAAGAAGGGTGTCATATCTACTTTAGTACTCAGAGCCTTGTTCACAGGCACTTGTGTTTCCCTGATCAATGCCTGTATTGCTGGTATACTTTTCGTTCCTCCGTTGGACTGTGTGGATCTGTTTAGAAGTGCACAGTTCAATACCACGACACCCAACGTTGAAACCTGCTGTTATGATCTTTTCAAAAGcaCTGTCAACAATGGAACAATTTCTTTTGAGGGGTCCTGGAGCGGAGTGAAAAATGCGACAATTTATTTTGCAAACTGCTGTGGTCTCTATGTGGAACCTGTTTGTCTGTAGCTTCACTAGAAGGTAACAATacaacaatgcagaaaacctcTGAACTAAATATAAtggcattatttattaaattcacacattttgaaatgtatgttAAGTTAATATATGTCTGCGCAGagtatgattttatttggtcataatttttttttatagatgttGCACAGTGTGTGcaagtattttaatttacttcaaTTTGTGTTATTCTGTCTTCTGTAAATGTTATAATCATTTTCAATCTTATcaaacatattcatattcataaatatcAAGACATTGTGCTctgcagtgtttcattttggcAGTTATGCTGGAAATGCTGCGAAAATATTGCATTACAGGAGTAAAGCATAACTAATAAGGGCCAAAGGGCTCTTTTATGAGGCAAGCAGTTTTTAAGATATAAAGCAGTGCACTCTGCCTTCGGATGGTAAAATGAGTTAAAGAAGTTTCTGCtgctttttacatatttattttacaaaagcaagtAACACAACGCAGCAGAAACACCTACAATGCTCATCCCTACAAGCATACTGAATATATTCTCTCTCTACAGTTCATATagttttttataatacaaaccCATACACGGACCTATCTTATCACATCTCACCACTATCTGTGGCAGCCTGGCATCTGAAAAAGTACTCCATGGTTAGTTTACGCAGTCAGCATGAAccttttttgctaaataatggTTACAAAGTCTTGTGAATGAGTTAAAAGTTTAGTTATTCTACATGaagatacatttcaaaatatgaaaaccTGCAAACATTGAGCATTAAAGGGTTTGGAGTAAGatttcttaaatatgttttgaaagTAGTCTCTTATTCTCACAAAGGCTTTATTTcgttaaaaacacagcaaaaataagttagatattttaatatattttaaaatgtattcctatgatggcaaagttgaatttttcgtcttgtgctgcttaatattttgtttataattataactGTGGTCATTTTTATCAGAATTCTTtcataaatagaaatgtaaaaagtacAGCATTATCTGTTGTAACAGTGTAAATTCCTTTACTGTCTCTTTTGGTCGATTTAATGTATCTTggctaaataaaactattaatatcTGACCCCACACTTTTCACTGATagtgtaaaatatgtatataatccATTTGTGTGAAGTTGAATGGTTCTAGAGATAGATGACGCATGAACAGTCTGAAAGGTCAGTAGTAAATGGCTTTACTGTGACAATAAagcacatgatttttttttccctcttctaGGAGACACATTtaagataaaaacacatttgcactgATTGACACTAATACTTTGCCCATATACAACCAATATCGGTGCACTGGCGTTTCTTAGATTAACGGCCATTTCCTTAAAAGCAGAACAATCCACTATAAAAAGCACCTCAGCAACAGCTACGgaaaaaagctgcatttctaCACAGCTGAGACACGTACATCACAGATGTTTGAGGAATCCTTGAAGAGTCCCTCTATCACGGTTCTTCAGTCATATAAACTTGACATAGGGacatttgaataaatcataacaAAGTTCCAGAGTCTATCTGAAAACATTGTTCTTCTGTCTACAGGCAGCCGGGTTTAGCATTTTTCTT

Function

symbol description
slc28a1 Predicted to enable nucleoside:sodium symporter activity. Predicted to be involved in nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC28A1 (solute carrier family 28 member 1).

NR:

description
sodium/nucleoside cotransporter 2-like isoform X3

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264156.1 True 3722 mRNA 0.39 18 1778613 1789240

Neighbor

gene id symbol gene type direction distance location
ch25hl1.1 ch25hl1.1,LOC107725732,LOC107567886,LOC107691148,LOC107736627 coding upstream 21928 1755660 ~ 1756685 (+)
si:dkey-24l11.2 si:dkey-24l11.2,LOC107725742,LOC107567892,LOC107691129,LOC107715195,LOC107562119 coding upstream 23715 1747275 ~ 1754898 (+)
pstpip1a pstpip1a,LOC107691132,LOC107715239,LOC107562121,LOC107690351,LOC107567896,LOC107725740,LOC108435346 coding upstream 42230 1726239 ~ 1736383 (+)
rcn2 rcn2,LOC107725741,LOC107691133,LOC107690352,LOC107562116,LOC107567882 coding upstream 52666 1723622 ~ 1725947 (+)
c18h11orf58 zgc:56106,LOC107746577,LOC107554484,LOC107554557,LOC107690399,LOC107715205 coding upstream 163891 1612601 ~ 1614722 (+)
malt3 LOC107690360,LOC107709807,LOC107691126 coding downstream 13121 1802361 ~ 1815297 (+)
LOC122323046 frmd5,LOC107562133,LOC570903,LOC108435336,LOC107556247 coding downstream 27162 1816402 ~ 1907583 (+)
ankrd34c ankrd34c,LOC107715204,LOC107691151,LOC107551450,LOC107690404,LOC107556256,LOC107714779 coding downstream 225832 2015072 ~ 2020057 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC107715227,LOC106514339 coding downstream 233430 2022670 ~ 2034070 (+)
sema4ba sema4ba,LOC107714785,LOC107556264,LOC107691120,LOC107715225,LOC107551463,LOC107690368 coding downstream 306313 2095553 ~ 2155503 (+)
G123622 NA non-coding upstream 18744 1758245 ~ 1759869 (+)
G123576 NA non-coding upstream 39481 1693116 ~ 1739132 (+)
G123599 NA non-coding upstream 159188 1616143 ~ 1619425 (+)
G123587 NA non-coding upstream 188326 1588754 ~ 1590287 (+)
G123527 NA non-coding upstream 267973 1502566 ~ 1510640 (+)
G123642 NA non-coding downstream 69768 1859008 ~ 1918466 (+)
G123643 NA non-coding downstream 130597 1919837 ~ 1920891 (+)
LOC122323174 NA non-coding downstream 265280 2054520 ~ 2061225 (+)
LOC122323220 NA non-coding downstream 533349 2322589 ~ 2331573 (+)
G123860 NA non-coding downstream 548982 2338222 ~ 2403970 (+)
G123568 NA other upstream 206682 1565426 ~ 1571931 (+)
tmem123 NA other upstream 723878 1045194 ~ 1054735 (+)
LOC122362993 LOC107758246,LOC107662138,LOC107657475,LOC107757244 other upstream 954938 814751 ~ 823675 (+)
G123243 NA other upstream 1669781 108369 ~ 108832 (+)
G123664 NA other downstream 212546 2001786 ~ 2002290 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other downstream 417959 2207199 ~ 2240260 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other downstream 512518 2301758 ~ 2319140 (+)
chd2 chd2,LOC107690375,LOC107715217,LOC107693036,LOC107715589 other downstream 621493 2410733 ~ 2461790 (+)
tmem170a tmem170a,LOC107596918,LOC107583727 other downstream 1722717 3511957 ~ 3554690 (+)

Expression


Co-expression Network