si:dkey-246g23.2 (si:dkey-246g23.2,LOC107749300,LOC107553994,LOC107684666,LOC107670153,LOC107738383,LOC108415329)


Basic Information

Item Value
gene id si:dkey-246g23.2
gene name si:dkey-246g23.2,LOC107749300,LOC107553994,LOC107684666,LOC107670153,LOC107738383,LOC108415329
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23818053 ~ 23853275 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264172.1
ACATCTCCAAACTGCATCAGCCTGATATAGACTAGATGATGGCTAGATGAGACAgcatatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctccagCTATTATAGTTGTCAAACAAGTCTTCGCTTGAAACAAGGGGATGGGAGTATAAAGACAGTGGTTTGAGAAGGACCGAGCGATGGAGCAAGGGTCGGAGGAGAACATGGAGAGCTCATGGACTCTGCTCTCCTGGCTGGCTTCTGGAGTGATGGTGTTCGGAGGTGCGGTTCCCTACGTCCCCCAGTACCAGGAGATCCAGAGGACCAATAACTCGGAGGGATTCTCAACAAGAGTCTGTCTGGTGCTGCTCGTGGCTAATATACTTCGCATTTTCTTCTGgatAGGCAAGCAGTTTGAGCTGCCTTTGCTCCTGCAGAGCGTGGTGATGATCCTCACCATGCTGGCTATGCTACATTTGTGCTGTTCCATCCAGAGCAGCAACCGCGTCAGTACTAAACAGCACCACATCACAGATTTGGACCTTCGGTATTTCTGGAGCTGGAGTTCTTTTGAGGACTATCTGATGTTCTGCTTTGCCTTCACGCTGCTGTGTGCTTTCGTAACGTTCCTCTTTCTGGACTGGGTCCTATTTGTGGAGGCCCTGGGCTCTTTGGCCGTAATGTTTGAAGCCATGTTGGGACTGCCTCAGCTGCTGCAGAACTACAACAACCGCTCCACCCGAGGCATGAGCATAAAGATGGTGCTTTTATGGACAGCTGGTGACATCTTTAAGACTGCGTATTTCGTGATCAATGAAAGCCCCACTCAGTTCGTGGTCTGTGGTGCAGTACAGATTTTAATTGACATTGCCATTCTGCTCCAGGTGGGCTACTACAGCCAGGACACAAGAATCAAACTGGGCTGAGATCACTACAATAATGATGGTGATCAACACTTCTAATTATGGACATTAAATGTGCTACTTATCTGCAAAACtatgcttttataaaaaaaaaaatatatacacaggGTTCAAAAGTCTGAAACTGCTAGTGAAAACTGATATTCTTATTAAAGACTTAGTattcaattaataaattgttaaaaataataaatagtttcaATCTGTTGAACCCTGccggattatatatatatatatatatatatatatatatatatatatatatatatatataaa
>XM_043264173.1
GCTGAGATACCGTCTGAATGGGTGTAGACGACTCTTACCATTCCTGACTATGATGAAAAAGACCCCTCATTGGATTCTGTGTCCAGAAAGGCCCTTATAAgtcatttataatgtgtttatattGGGATGGGAGTATAAAGACAGTGGTTTGAGAAGGACCGAGCGATGGAGCAAGGGTCGGAGGAGAACATGGAGAGCTCATGGACTCTGCTCTCCTGGCTGGCTTCTGGAGTGATGGTGTTCGGAGGTGCGGTTCCCTACGTCCCCCAGTACCAGGAGATCCAGAGGACCAATAACTCGGAGGGATTCTCAACAAGAGTCTGTCTGGTGCTGCTCGTGGCTAATATACTTCGCATTTTCTTCTGgatAGGCAAGCAGTTTGAGCTGCCTTTGCTCCTGCAGAGCGTGGTGATGATCCTCACCATGCTGGCTATGCTACATTTGTGCTGTTCCATCCAGAGCAGCAACCGCGTCAGTACTAAACAGCACCACATCACAGATTTGGACCTTCGGTATTTCTGGAGCTGGAGTTCTTTTGAGGACTATCTGATGTTCTGCTTTGCCTTCACGCTGCTGTGTGCTTTCGTAACGTTCCTCTTTCTGGACTGGGTCCTATTTGTGGAGGCCCTGGGCTCTTTGGCCGTAATGTTTGAAGCCATGTTGGGACTGCCTCAGCTGCTGCAGAACTACAACAACCGCTCCACCCGAGGCATGAGCATAAAGATGGTGCTTTTATGGACAGCTGGTGACATCTTTAAGACTGCGTATTTCGTGATCAATGAAAGCCCCACTCAGTTCGTGGTCTGTGGTGCAGTACAGATTTTAATTGACATTGCCATTCTGCTCCAGGTGGGCTACTACAGCCAGGACACAAGAATCAAACTGGGCTGAGATCACTACAATAATGATGGTGATCAACACTTCTAATTATGGACATTAAATGTGCTACTTATCTGCAAAACtatgcttttataaaaaaaaaaatatatacacaggGTTCAAAAGTCTGAAACTGCTAGTGAAAACTGATATTCTTATTAAAGACTTAGTattcaattaataaattgttaaaaataataaatagtttcaATCTGTTGAACCCTGccggattatatatatatatatatatatatatatatatatatatatatatatatatataaa
>XM_043264174.1
GTTTAAGCGCCACGGCGTTCTTGTGCGATGCGTTTAAGCGCTGATCGGAGAGTTTGTGCGCGCGATACCTACTGCATCGAGATTCACTTTGATTTATCAGCTTCGCTTGATAGCTATCGGACAAGACGAGCAGTCGATAAAATGTGCACACCCGGATTCATGTATCCAGGAATGGGGATGGGAGTATAAAGACAGTGGTTTGAGAAGGACCGAGCGATGGAGCAAGGGTCGGAGGAGAACATGGAGAGCTCATGGACTCTGCTCTCCTGGCTGGCTTCTGGAGTGATGGTGTTCGGAGGTGCGGTTCCCTACGTCCCCCAGTACCAGGAGATCCAGAGGACCAATAACTCGGAGGGATTCTCAACAAGAGTCTGTCTGGTGCTGCTCGTGGCTAATATACTTCGCATTTTCTTCTGgatAGGCAAGCAGTTTGAGCTGCCTTTGCTCCTGCAGAGCGTGGTGATGATCCTCACCATGCTGGCTATGCTACATTTGTGCTGTTCCATCCAGAGCAGCAACCGCGTCAGTACTAAACAGCACCACATCACAGATTTGGACCTTCGGTATTTCTGGAGCTGGAGTTCTTTTGAGGACTATCTGATGTTCTGCTTTGCCTTCACGCTGCTGTGTGCTTTCGTAACGTTCCTCTTTCTGGACTGGGTCCTATTTGTGGAGGCCCTGGGCTCTTTGGCCGTAATGTTTGAAGCCATGTTGGGACTGCCTCAGCTGCTGCAGAACTACAACAACCGCTCCACCCGAGGCATGAGCATAAAGATGGTGCTTTTATGGACAGCTGGTGACATCTTTAAGACTGCGTATTTCGTGATCAATGAAAGCCCCACTCAGTTCGTGGTCTGTGGTGCAGTACAGATTTTAATTGACATTGCCATTCTGCTCCAGGTGGGCTACTACAGCCAGGACACAAGAATCAAACTGGGCTGAGATCACTACAATAATGATGGTGATCAACACTTCTAATTATGGACATTAAATGTGCTACTTATCTGCAAAACtatgcttttataaaaaaaaaaatatatacacaggGTTCAAAAGTCTGAAACTGCTAGTGAAAACTGATATTCTTATTAAAGACTTAGTattcaattaataaattgttaaaaataataaatagtttcaATCTGTTGAACCCTGccggattatatatatatatatatatatatatatatatatatatatatatatatatataaa
>XM_043264175.1
gaaatgatgGATTTATGGCTGTTTTGGCATTTCGTCTTATTATAACTCTTTAATATACAACTATCGTTATGTTGTTTGCAAAGAAATCTTATCGgtatataaaatcaattttatgtaaataatattataaacaatgattgttattttttgtttgtttgtttgtttatacatGACACGTTTCAAAAGCTCGTGTTTGTGTTTAGGCCAGTAAAGCTGTTGATCAAGTCGAAATCTAAATTATTccgaaaaaaaagtcatgttagCATAGATTACACATTCTTGCATCACAAACCTTTTCTTACATCCTTTAAAGAGCATTCAGACCCTCAGGAAACGCGTCTGTCCGAAAGGCTTGTGCTGAATTGGGGAAATGATGCTGCAAAGGGATGGGAGTATAAAGACAGTGGTTTGAGAAGGACCGAGCGATGGAGCAAGGGTCGGAGGAGAACATGGAGAGCTCATGGACTCTGCTCTCCTGGCTGGCTTCTGGAGTGATGGTGTTCGGAGGTGCGGTTCCCTACGTCCCCCAGTACCAGGAGATCCAGAGGACCAATAACTCGGAGGGATTCTCAACAAGAGTCTGTCTGGTGCTGCTCGTGGCTAATATACTTCGCATTTTCTTCTGgatAGGCAAGCAGTTTGAGCTGCCTTTGCTCCTGCAGAGCGTGGTGATGATCCTCACCATGCTGGCTATGCTACATTTGTGCTGTTCCATCCAGAGCAGCAACCGCGTCAGTACTAAACAGCACCACATCACAGATTTGGACCTTCGGTATTTCTGGAGCTGGAGTTCTTTTGAGGACTATCTGATGTTCTGCTTTGCCTTCACGCTGCTGTGTGCTTTCGTAACGTTCCTCTTTCTGGACTGGGTCCTATTTGTGGAGGCCCTGGGCTCTTTGGCCGTAATGTTTGAAGCCATGTTGGGACTGCCTCAGCTGCTGCAGAACTACAACAACCGCTCCACCCGAGGCATGAGCATAAAGATGGTGCTTTTATGGACAGCTGGTGACATCTTTAAGACTGCGTATTTCGTGATCAATGAAAGCCCCACTCAGTTCGTGGTCTGTGGTGCAGTACAGATTTTAATTGACATTGCCATTCTGCTCCAGGTGGGCTACTACAGCCAGGACACAAGAATCAAACTGGGCTGAGATCACTACAATAATGATGGTGATCAACACTTCTAATTATGGACATTAAATGTGCTACTTATCTGCAAAACtatgcttttataaaaaaaaaaatatatacacaggGTTCAAAAGTCTGAAACTGCTAGTGAAAACTGATATTCTTATTAAAGACTTAGTattcaattaataaattgttaaaaataataaatagtttcaATCTGTTGAACCCTGccggattatatatatatatatatatatatatatatatatatatatatatatatatataaa
>XM_043264176.1
ACATCTCCAAACTGCATCAGCCTGATATAGACTAGATGATGGCTAGATGAGACAgcatatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctccagCTATTATAGTTGTCAAACAAGTCTTCGCTTGAAACAAGGGGATGGGAGTATAAAGACAGTGGTTTGAGAAGGACCGAGCGATGGAGCAAGGGTCGGAGGAGAACATGGAGAGCTCATGGACTCTGCTCTCCTGGCTGGCTTCTGGAGTGATGGTGTTCGGAGGTGCGGTTCCCTACGTCCCCCAGTACCAGGAGATCCAGAGGACCAATAACTCGGAGGGATTCTCAACAAGAGTCTGTCTGGTGCTGCTCGTGGCTAATATACTTCGCATTTTCTTCTGgatAGGCAAGCAGTTTGAGCTGCCTTTGCTCCTGCAGAGCGTGGTGATGATCCTCACCATGCTGGCTATGCTACATTTGTGCTGTTCCATCCAGAGCAGCAACCGCGTCAGTACTAAACAGCACCACATCACAGATTTGGACCTTCGGTATTTCTGGAGCTGGAGTTCTTTTGAGGACTATCTGATGTTCTGCTTTGCCTTCACGCTGCTGTGTGCTTTCGTAACGTTCCTCTTTCTGGACTGGGTCCTATTTGTGGAGGCCCTGGGCTCTTTGGCCGTAATGTTTGAAGCCATGTTGGGACTGCCTCAGCTGCTGCAGAACTACAACAACCGCTCCACCCGAGGCATGAGACTGTCTGCAGGCGTCGACGGCCCTCGACCGATCACTGCACTGACATCTGTGTTTCTTTGCCTATCATAAAGATGGTGCTTTTATGGACAGCTGGTGACATCTTTAAGACTGCGTATTTCGTGATCAATGAAAGCCCCACTCAGTTCGTGGTCTGTGGTGCAGTACAGATTTTAATTGACATTGCCATTCTGCTCCAG

Function

symbol description
si:dkey-246g23.2 Predicted to be involved in phospholipid translocation and retrograde transport, endosome to Golgi. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endosome and trans-Golgi network. Orthologous to human SLC66A2 (solute carrier family 66 member 2).

NR:

description
PQ-loop repeat-containing protein 1-like

GO: NA

KEGG:

id description
K23679 PQLC1, SLC66A2; solute carrier family 66, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264172.1 False 1188 mRNA 0.43 5 23818053 23853275
XM_043264173.1 False 1164 mRNA 0.43 5 23820902 23853275
XM_043264174.1 False 1215 mRNA 0.44 5 23818325 23853275
XM_043264175.1 True 1424 mRNA 0.40 5 23820380 23853275
XM_043264176.1 False 938 mRNA 0.50 6 23818053 23852960

Neighbor

gene id symbol gene type direction distance location
zgc:173742 zgc:173742,LOC107553995,LOC107684664,LOC107749320,LOC108415671,LOC106560872 coding upstream 3313 23789393 ~ 23814740 (+)
plcg2 plcg2,LOC107722471,LOC107738392,LOC107684680 coding upstream 512715 23289516 ~ 23305338 (+)
meak7 tldc1,LOC107587014,LOC107722463,LOC107738391,LOC107684679 coding upstream 529990 23283862 ~ 23288063 (+)
cotl1 cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015 coding upstream 541583 23271267 ~ 23276470 (+)
zgc:56622 zgc:56622,LOC107666229,LOC107738396,LOC107587047,LOC107722465,LOC107559805 coding upstream 551928 23262358 ~ 23266125 (+)
kcng4a kcng4a,kcng4,LOC107749318,LOC107553964,LOC107738382,LOC107684667,LOC107670163 coding downstream 5761 23859036 ~ 23892165 (+)
si:dkey-246g23.4 si:dkey-246g23.4,LOC107553963,LOC107684669,LOC107749297,LOC107738435 coding downstream 46651 23899926 ~ 23911982 (+)
wfdc1 wfdc1,LOC107553961,LOC107749317,LOC107684670,LOC107583842,LOC107670154 coding downstream 62654 23915929 ~ 23927588 (+)
utp4 utp4,LOC107749295,LOC107553989,LOC107748774,LOC107583899 coding downstream 75015 23928290 ~ 23936310 (+)
vps9d1 vps9d1,LOC107749294,LOC107553982,LOC107670156,LOC107748773 coding downstream 83725 23937000 ~ 23952211 (+)
G128725 NA non-coding upstream 30890 23785024 ~ 23787163 (+)
G128699 NA non-coding upstream 458496 23358451 ~ 23359557 (+)
G128696 NA non-coding upstream 480964 23335791 ~ 23337089 (+)
G128476 NA non-coding upstream 737743 23068310 ~ 23080310 (+)
G128475 NA non-coding upstream 750985 23066812 ~ 23067068 (+)
G128753 NA non-coding downstream 175214 24028489 ~ 24029817 (+)
G128770 NA non-coding downstream 203445 24056720 ~ 24063271 (+)
G128772 NA non-coding downstream 205078 24058353 ~ 24066103 (+)
G128803 NA non-coding downstream 443834 24297109 ~ 24297333 (+)
G128804 NA non-coding downstream 444334 24297609 ~ 24297845 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 81205 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 1379374 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 1406096 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3176994 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 3217534 20589684 ~ 20600519 (+)
G128858 NA other downstream 596490 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 730570 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 1441468 25294743 ~ 25309740 (+)
mt2 NA other downstream 1493117 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 2067992 25921267 ~ 26174156 (+)

Expression


Co-expression Network