arf5 (arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562)


Basic Information

Item Value
gene id arf5
gene name arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20629743 ~ 20633636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264204.1
CCAAGTCTTCCACGGTGGCTACTCTTCTTACGTGGCAACGCGTCAAGCGACCGCGAGACACTGAGCACAAAgagacagaatattcatttaaacacattctCGCATTTTCCTCACCGTTTCGCTTGCCGTCAGGGATTAGGGTTTTCTTTTAAGTCATCATGGGTCTGACCATCTCGTCGCTCTTTGGGAGACTTTTCGGCAAGAAGCAGATGAGAATACTGATGGtgGGTTTGGACGCTGCAGGTAAAACCACGATACTTTACAAGCTAAAGCTGGGGGAAATTGTGACCACTATCCCCACTATAGGTTTTAACGTAGAGACCGTTGAATACAAGAACATCTGCTTCACCGTGTGGGATGTCGGCGGTCAGGACAAGATTCGTCCTCTCTGGAGGCACTATTTTCAGAACACACAGGGTCTAATCTTTGTGGTGGACAGcaatgacagagagagagtggcCGAATCTGCAGAGGAGCTTTCTAAAATGTTGCAGGAAGATGAACTGAGGGACGCCGTGCTGCTGGTTTTCGCAAACAAACAGGATCTGCCGAACGCCATGGCCGTCAGTGAACTCACAGACAAACTTGGGCTGCAGAGTCTCCGCAGTAGAACGTGGTACGTTCAAGCGACCTGCGCTACACAAGGCACCGGACTCTATGAAGGACTGGACTGGTTATCAAACGAGCTCTCTAAACGCTAGTGTGCCTGCTAATAGTGGCGAGACGTGTGTGAACTTTAGAAAGACGGAGTGTGTGGGTTGATAGACTCTGTCTTGAAGAACttgagtgagtgaatgtgtgtgtgcgcgcgcgtgtggaTGAGCTATCAAATGTTCAGCATCATGTCTAATCTATCCTATCTGTCTTTTTCTATGCTGAATTCCTACTaatgttcttttaattttttttcccttacaaATCTGATTGTTTTCCATGACTGTAAGATAATGCTTAAATTGCACGTTTACTTGATAACTGTGAGAGCATTATGGCACAACAGGAAAGGAAGTGTGGGAGGAAGTCCAGGGTTGAGGCGTCCCTTAAGTTTGGAGTAGTTGTAGCTTAAGAGCGAGTAAATGCCAGGAAGACCCCATTGTGCATCGACGCTCACTCCAAGATCCCTGTTGCAGTGCTGCCTAACTTGACTAGCGAGTCGCAGGATTCGCCGCTCCATGAACATTCCATTTCATGGCAGTTAACGTTATTCCAGGGGGTTGTTTTGCAAAGCTACACATTAACTTTTGTTGCAGAAGACTCCTAAGTCTCGTTTCAGGGACTTTGCCACCAACAGATTCTTTGGAACAAAATGGTACATGAAGTATTGATAGCAATATGGAGTAATCCATGATTGATTAGCCCAATGATCTCTAACCGCCTTTGATGTTAAATACCTCCATTGAACAATATGTAAGTAAATGTTTTGGTTGAAAGCATTTGAACAGATCATAGTACCTtgtctgatttttattttatttttttctgaggtGGTATGGACATGGTGGGTTGGACTAGGATGAATTGTTTCTTCAGTCTGCTCcatgtttcttttctcttttcatgTCAAacgtatgcatgtgtgtatgtacgcTGGCACCTTTTAATATCAGCGATTAAGGTGCGTTCGGTGAGTTTTGTATGGGACACTCCAGTACACCAATAAGGTCCTCATTTCCAGAGCAGGATTTTCTGATCTTGTACACTTCCCTACTGCGGCAAATGCCCTACTTTTTGCTCGAACTGTGCCACAAGGTCCACCCCTGTGAGAAAATAAAGATCtgataaaaactaa

Function

symbol description
arf5 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in axial chorda mesoderm; axis; central nervous system; notochord; and polster.
zgc:77650 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in notochord and polster. Orthologous to several human genes including ARF5 (ADP ribosylation factor 5).

NR:

description
PREDICTED: ADP-ribosylation factor 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264204.1 True 1789 mRNA 0.45 6 20629743 20633636

Neighbor

gene id symbol gene type direction distance location
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding upstream 11563 20609937 ~ 20618180 (+)
syt1b syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864 coding upstream 64437 20561835 ~ 20565306 (+)
cers3b cers3b,LOC107559674,LOC107733272,LOC107662883,LOC107686553,LOC103029792 coding upstream 91125 20532906 ~ 20538618 (+)
LOC122323072 LOC107559655,LOC107686551,LOC107733270,LOC107662882,LOC107736185,LOC563500,LOC107600544 coding upstream 98164 20506031 ~ 20531579 (+)
vwf vwf,LOC107600553 coding upstream 125369 20471101 ~ 20504374 (+)
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding downstream 14664 20648300 ~ 20653670 (+)
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding downstream 20896 20654532 ~ 20657823 (+)
rabl2 rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941 coding downstream 33117 20666753 ~ 20671837 (+)
arsa arsa,LOC107710387,LOC107599918,LOC107560065 coding downstream 294879 20928515 ~ 20933433 (+)
chkb chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153 coding downstream 329492 20963128 ~ 20969701 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding upstream 40880 20586051 ~ 20588863 (+)
G127860 NA non-coding upstream 57433 20562083 ~ 20572310 (+)
G127785 NA non-coding upstream 245985 20325330 ~ 20383758 (+)
G127800 NA non-coding upstream 253908 20373854 ~ 20375835 (+)
G127780 NA non-coding upstream 348448 20256712 ~ 20281295 (+)
LOC122363025 NA non-coding downstream 8129 20641765 ~ 20647708 (+)
LOC122362840 NA non-coding downstream 236239 20869875 ~ 20887115 (+)
G127935 NA non-coding downstream 261141 20894777 ~ 20937442 (+)
G128148 NA non-coding downstream 447133 21080769 ~ 21081291 (+)
G128149 NA non-coding downstream 494917 21128553 ~ 21129033 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 29224 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 73116 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 80386 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 536142 20067678 ~ 20093601 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other upstream 614037 20003004 ~ 20015706 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other downstream 1209 20634845 ~ 20641059 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1767308 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1801170 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2823464 23457100 ~ 23736848 (+)
G128858 NA other downstream 3816129 24449765 ~ 24457560 (+)

Expression


Co-expression Network