mc1r (mc1r,tubb3,LOC107662306,LOC107706122,LOC103037812)


Basic Information

Item Value
gene id mc1r
gene name mc1r,tubb3,LOC107662306,LOC107706122,LOC103037812
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 6935956 ~ 6938158 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264206.1
GACGTTAGCAAAGAAGTGTTTAAACTTACGtgtttgcttttttacattCTGCCTATTTTTTGTCTGATTAAttggatgtttttatttactttactgTCAGTGTAATGTTTTAATGGCTGATCACCGAGTTGGCAAGCGATTCATTGAACGTACCATAAACCATCAACTCTGCACTGGATATTAAAAACACCCTATCGATTAGCACAGTAATAGACGATTGGCGTTTAAGATAATAACTTGTAAGTACAAAACACTAGATACTTCTCTtatacaaaataatcatttattggATAAATCTAAGGCATGTAAactaataaacacataaacacgCACTCACACATTCATAGTTGCAGGAAGAGAGAAAGTAAGAAATGGACGAGTAagagaatgaaaatgtgaaataccAAGTTTACAGCAATATGTGCAATTTCATAGATAACCATCAACCACTTCATATTAGGCTATTACATTTAATGAGTTTTTAAATCTCGAAAACGCAATTGCAGGAATCATTAGAAAATGTAAAGCACAAAACTTTATTTCTCTTAATGGTCGGAACAATCATTTAAGTTTGACAAGGAAGTCATCAAACGCCGAGTCTGAGGCGGTGCCCTGTAACGAGCGCAAGTTTGTGGACTGTGCTGTATGAGGCAGTAATTTTGAAAGGAAAAGAACATCCAACAGACTCGAAAGAACTAAATGAAAACCGATTGAAGGAGCATGAACGACTCGTCGCGCTATTACTTCAGCATGAAACACATGGACTACATATATACTATTGACAATAACATAACTTTGAACGCAACGATCGGCGACATAAATGGCACCGGGATCGCCCAAATCATGATCCCTCAGGAGTTATTTCTAATGCTCGGCTTGATCAGTTTGGTGGAAAACATCTTGGTGGTGGTGGCCATCATCAAGAACAGGAATCTACACTCGCCAATGTATTATTTCATCTGTTGTCTGGCGGTGTCGGACATGCTGGTGAGCGTCAGTAATGTGGTGGAGACACTCTTCATGTTATTGACGGAGCACGGGCTGCTGCTTGTCACGGCAAAGATGTTGCAGCACTTAGACAATGTGATCGACATTATGATATGCAGTTCTGTCGTTTCCTCTTTGTCGTTCCTGTGCACTATTGCGGCCGACCGCTATATCACCATCTTTTACGCGCTTCGATACCATAGCATAATGACCACGCAACGCGCTGTGGCCATCATCGCGGTGGTGTGGCTCACTAGCATCACCTCGAGCTCTTTATTTATCGTTTATCACACTGATAACGCGGTCATCGCCTGTCTCGTCACGTTTTTTGGCTTGACGTTGGTGTTCACAGCGGTTCTCTACCTCCACATGTTTATCCTGGCGCACGTTCACTCCAGACGTATAATGGCTCTCCATAAGAGTCGCCGGCAAGCCACTAGTATGAAGGGAGCCATTACTCTGACCATCTTGCTCGGGGTTTTCGTTATCTGCTGGGGTCCCTTTTTTCTCCACCTCATCCTTATCCTCACCTGTCCCACAAATCCTTACTGCAAATGttatttcagtcatttcaaCCTGTTTCTAATTCTTATCATTTGCAATTCACTTATAGACCCTCTCATTTACGCGTACCGCAGTCAGGAGCTGCGCAAGACGctaaaagaaatcattttttgctCGTGGTTCTTTGCAATGTGAGTAATTCCTTCTGGATGTTTGTAGGAAACACTTGGATAAGCATCTGCgttaatatttatgttaaagTCCGATATTATTCAGTTTCATTCTTAGCAAATTGCATTCTTAATGACTCTtaaagactctttttttttgttaaataaataatttgatttacataaattatgtaTCAGTATGTTTATAATTCGTGCCTtaaatttagttaaattaagGCATCTCGTAATGcattaattgcataaaaaaagagaataaaaatacagattttcatAATGAAAAATGCCATGCACAAagaagagagagtgtgtgtgtgtgtaatatgtcaATGTTAAAAGTATTAGAAATTACTGTTTGGAAACTAGTTTGgctttaattgta

Function

symbol description
mc1r Predicted to enable melanocyte-stimulating hormone receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in plasma membrane. Is expressed in several structures, including endocrine system; female organism; integument; male organism; and nervous system. Human ortholog(s) of this gene implicated in familial melanoma; major depressive disorder; melanoma; oculocutaneous albinism type II; and pigmentation disease. Orthologous to human MC1R (melanocortin 1 receptor).
tubb3 Enables netrin receptor binding activity. Involved in axon guidance and dorsal root ganglion development. Located in microtubule. Implicated in complex cortical dysplasia with other brain malformations 1 and congenital fibrosis of the extraocular muscles.

NR:

description
melanocortin 1 receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004980 melanocyte-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04199 MC1R; melanocortin 1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264206.1 True 2061 mRNA 0.39 2 6935956 6938158

Neighbor

gene id symbol gene type direction distance location
tcf25 tcf25 coding upstream 25881 6872800 ~ 6910075 (+)
LOC122323232 cyba,LOC107550118,LOC107661987,LOC107571231,LOC107715044,LOC107698019,LOC100705310 coding upstream 64474 6868863 ~ 6871482 (+)
pdcd5 pdcd5,LOC107550119,LOC107690755,LOC107571235 coding upstream 91629 6841363 ~ 6844327 (+)
uraha urah,LOC107550123,LOC107670260,LOC107740931 coding upstream 101393 6831770 ~ 6834563 (+)
cd151l cd151,cd151l,LOC107670266,LOC105891114,LOC106561929,LOC106587086,LOC103368535 coding upstream 106334 6817569 ~ 6829622 (+)
def8 def8,LOC107742104,LOC107755590 coding downstream 22957 6961115 ~ 7019049 (+)
LOC122362721 lamb1 coding downstream 150660 7088818 ~ 7090566 (+)
LOC122362727 NA coding downstream 907842 7846000 ~ 7848851 (+)
emc8 emc8,LOC106587369 coding downstream 1052375 7990533 ~ 7994775 (+)
si:ch211-220f16.2 LOC107711757,LOC107567291,LOC107667970,LOC107674998,LOC107565346 coding downstream 1205341 8143499 ~ 8168224 (+)
G124867 NA non-coding upstream 7416 6928327 ~ 6928540 (+)
G124866 NA non-coding upstream 8006 6927624 ~ 6927950 (+)
G124799 NA non-coding upstream 99034 6836700 ~ 6836922 (+)
G124795 NA non-coding upstream 121321 6814324 ~ 6814635 (+)
G124793 NA non-coding upstream 130268 6805483 ~ 6805688 (+)
G124877 NA non-coding downstream 2601 6940759 ~ 6941102 (+)
G124902 NA non-coding downstream 96285 7034443 ~ 7034667 (+)
G124904 NA non-coding downstream 117234 7055392 ~ 7055773 (+)
G124907 NA non-coding downstream 121193 7059351 ~ 7059597 (+)
G124913 NA non-coding downstream 233861 7172019 ~ 7172434 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other upstream 395049 6539247 ~ 6540907 (+)
G124707 NA other upstream 644031 6291491 ~ 6291925 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other upstream 906835 6020549 ~ 6029121 (+)
G124661 NA other upstream 956674 5976210 ~ 5979282 (+)
G124612 v2ra17,LOC107568349,LOC107568268,LOC107703349,LOC107695207,LOC107722082,LOC105904790,LOC107695201 other upstream 1306303 5623453 ~ 5629653 (+)
G124881 LOC102215562 other downstream 88160 7026318 ~ 7027135 (+)
G124914 NA other downstream 234468 7172626 ~ 7173020 (+)
G124920 NA other downstream 239681 7177839 ~ 7178276 (+)
gins2 gins2,psf2 other downstream 1057414 7995572 ~ 8007882 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other downstream 1230707 8168865 ~ 8532072 (+)

Expression


Co-expression Network