dhx36 (dhx36)


Basic Information

Item Value
gene id dhx36
gene name dhx36
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 6737075 ~ 6759776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264225.1
TGACGTCACTATCAGTCGCCTCGGCTGAAACCCGTTCGTCATATATGTACgacaatacatacatttaagaaaatagCGTTATGTCGGGTTGTAAAAcgtaataataaatgacattcaGTGGCATCTTAACACTTTATCGTCTTTGAGCCTGCATCAGAATTACGGCAGCGGCCCGGGATCTTTGCCCGGTGCTTTGTCAGTCCAGCGGCATGAATCATGGGTCTGGTAATAGACGTGGTCGGAGAGGAGGGGGTCGGCGGTTCGGAGACGGAGGTTCCAGGTGGGATGGAGGGGCTGGATCCAGCGGGGGTGGAGGATACGCGAGGAGCTCCGAGTGGGACTCAAGGGAAGAGCAGGGACATGGAGGGGGacgaagaggaagaggaggtggaggtggaggtggaagAGGCAAACACCCACCCCATTTAAAGGGTCGAGAAATAGGACTGTGGTATGCCAAATGGGGTGGAATCAAAAGATCTGAAGCAGAAAGGAAATCTAGGGCTGTTGTTCAGATGGATGAACAACGAGAGCAGCACATTACTCAGCTGCTGAACTCTGTCCAGAGAGATGCGGGTAAAGACACGCACCCCTCCACATCTCAGAGCTGGATGGTGAAGCAGGAACCCAGTGGCCACAGTTACTTTGATGGAGATGATCCTCCAGAACctcaaaacattgtaaaaatgcCAAAGGTTGAGCCAAAAGAGGAGAAACGAGAGAATAAGTATGAGTCGGGAGCGAGCGTGAAAGAGGAACTTAAAGACGCTGACCTGGAGTACTTATTCCAAGATGTCGTGCGGATACCCTCTCTTGACGAGGAACTCAAAAAAGATCTGAAGAGGAAAAACGATAACGCTAGATACCTCGATATGCTGAAATTCAGAGAGAAGCTGCCTTCCTATGGGATGAGAGAGGAGCTGGTTAGCCTAATCGGAGCTAACCAAGTACTGGTAATCAGTGGAGAGACCGGCTGTGGGAAGACCACCCAGGTTACTCAATTCATCCTTGATGATTTCATTGAGAGGGGCATGGGTTCTCTCTGCAGGGTTGTTTGCACACAGCCAAGGCGTATCAGCGCCATATCTGTTGCAGAGAGGGTGGCTGCAGAACGTGCAGAGTCTGTGGGAGACGGGAAGTCCTGTGGGTATCAGATCCGTCTGCAGAGTCGGTTACCACGGAAACAAGGCTCAGTGTTGTATTGTACTACAGGCATTATTCTTCAGTGGCTCCGCTCAGATCCcTTTCTTTCAAGCGTAAGTCATCTGGTACTGGATGAAATTCACGAGAGGAGTCTTCAGTCTGACGTTCTTCTCACCATCGTGAAGGACTTGTTAACTGCTCGAGAGGACCTGAAAGTGGTCCTAATGAGTGCCACTCTTAATGCTGAGAAATTTAGCAAGTATTTCAATAATTGTTCCATGGTCCATATTCCTGGATACACATACCCAGTAAAAGAGCACTTGCTGGAGGATGTGGTGGAATTGCTTAGGTTCAAGCCGCAACATCAGGACCGCAGACCTCGCTATAGGAGAGGATTTATGCACGGGCAGAATGTGCGACCAGAGAAAGAACAGAAGGAGGCCGAATACCGTGAGAGCTGGCCCTGCTTCGCCCGTACGCTCAGAGAACGGTACTCAGACAGCACCGTTGATGCGCTGGAGATGATGGACGATGATGACAAGATCAATCTGGAGCTTATCGTAGCATTGATCAGACACATTGTGATGAAAGAGGATGATGGAGCAATTCTAGTGTTTCTTCCTGGATGGGACAACATCAGCACCCTGAATGACCTTCTCATGGCTGACCCGATGTTTAAGTCAGATCGGTTCATCATCATCCCCCTCCACTCTTTAATGCCCACGGTGTCTCAGACTCAGGTGTTCAAAAAGCCGCCCCCGGGGGTGTGCAAGATCGTGATCGCTACCAACATCGCAGAAACCAGTATCACAATAGACGATGTCGTGTATGTGATAGACGGAGGGAAGATTAAAGAAACTCATTTTGACACCCAGAACAATATCAGGACCATGACAGCGGAGTGGGTGAGCTTAGCCAATGCCAAACAGAGGAAAGGCCGCGCTGGCAGAGTGTCTCCTGGCAATTGCTATCACCTGTATAATGGACTAAGGGCCAGTCTCCTGGATAACTACCAGTTGCCTGAGATCCAACGCACTCCACTGGAAGAGCTTTGCTTGCAAATAAAGataCTGAAGTTGGGATCCATTGCTTCTTTCCTGCGAAAGACTATGGACCCCCCATCAGACAAAGCGATAGAGCTGGCCATTACACACCTGGTGGACCTGAATGCTCTAGACCGGAATGAAGAGTTAACTCCATTAGGATTCCATCTTGCCCGGATGCCTGTGGAGCCTCACATAGGAAAAATGATTCTGTTCGGGGCTCTCCTGGGCTGTTTGGACCCTGTGCTTACCATTGCAGCCAGCCTTAGCTTTAAAGATCCCTTCTTCATACCGCTGGGGAAGGAGAAGATTGCAGACCACAGGAGGAAAACGCTCTCCCAAAACTCTAGAAGTGACCATCTCGCCATTGTCAATGCATTTTGGggcTGGGAGGATTCTAAGAAACAGGGCAGCAGGTTTGAGAAGGAATACTGCTGGGAAAATTTCCTTTCTGCCAACACGCTACAGATGCTGAATAATATGAAGGGTCAGTTTGCGGAGCATCTTTTGACAGCTGGCTTTGTGAAGAGTAAGGATCCTAAAGATCCCAGCCCTAACATCAACTCGGaGAATGAGAAGCTGATCAAGGCTGTGATCGTTGCTGGTTTGTACCCTAAAGTGGCCAAGATTCGTCCCAGCCACAGTAAGAAAAGACCAATGCCAGTGAAGGTGTACACCAAGGCTGATGGGAAAGTTTGTATCCACCCTAAATCCGTCAATGCAGAGGAAACTCAGTTCCACTACACATGGCTCATTTATCACCTGAAGATGAAGACCACCAGCATCTTCCTCTATGACTGCACAGAAGTGTCTCCATTTTCACTGTTATTTTTTGGAGGAGATATCTCCATCCAGAGGGACCAGGACCAAGAGACGATTGCGGTGGACGAGTGGATCGTGTTTCAGTCCCCCGGACGCATTGCTCACCTTGTCAAGGACCTGAGGAAGGAGCTGGACGTGTTACTTGAGGACAAAATAAAGAGTCCACGTCCTGTGGTCTGGAATGACCGAAAGTCTAAAGATTGTGCTGTTCTGTCCGCTATAATCGACCTCATCACAACAGAGGAAACCCCTGCTGGAGGCCCCAGGAGAGGCAGCCAGTGAGCACCAACCAGGAGGTCATTTATTTGAGAGACATTTAAACTGAACACAATGATACTCTTTCTCTGTACTTGTAGGTAGAAATAAGTAACAgatttttggttttgattttttttttattattattattttatcattaactTGAGTTATTGTAAGTTTTACTTTacagtaatttattaaattcGCCATCATGCAATCAATTCA

Function

symbol description
dhx36 Predicted to enable DNA helicase activity and G-quadruplex RNA binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human DHX36 (DEAH-box helicase 36).

NR:

description
ATP-dependent RNA helicase DHX36

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264225.1 True 3491 mRNA 0.48 25 6737075 6759776

Neighbor

gene id symbol gene type direction distance location
LOC122362447 gpr149,LOC107738785,LOC107548963,LOC107740961,LOC107695439 coding upstream 2793 6724830 ~ 6734282 (+)
LOC122323211 olfcw1,LOC107548939,LOC107749567,LOC107695442 coding upstream 164522 6568959 ~ 6572553 (+)
LOC122323214 LOC107548925,LOC107749544,LOC107695434 coding upstream 170466 6562926 ~ 6566609 (+)
LOC122362605 LOC107739792,LOC107564274,LOC107728083,LOC107702188,LOC107574278,LOC107680399,LOC107719307,LOC107569497,LOC107733659,LOC107750410 coding upstream 573209 6160559 ~ 6163866 (+)
LOC122362598 LOC107557170,LOC107748085,LOC107697635,LOC107741381,LOC107697634,LOC107569152,LOC107741383,LOC107569151 coding upstream 724556 6009050 ~ 6012519 (+)
LOC122362675 LOC107710267,LOC107704474 coding downstream 41652 6801428 ~ 6804684 (+)
cd151l cd151,cd151l,LOC107670266,LOC105891114,LOC106561929,LOC106587086,LOC103368535 coding downstream 57793 6817569 ~ 6829622 (+)
uraha urah,LOC107550123,LOC107670260,LOC107740931 coding downstream 71994 6831770 ~ 6834563 (+)
pdcd5 pdcd5,LOC107550119,LOC107690755,LOC107571235 coding downstream 81587 6841363 ~ 6844327 (+)
LOC122323232 cyba,LOC107550118,LOC107661987,LOC107571231,LOC107715044,LOC107698019,LOC100705310 coding downstream 109087 6868863 ~ 6871482 (+)
G124760 NA non-coding upstream 45674 6689712 ~ 6691401 (+)
G124754 olfcs2,LOC107741025,LOC107550110,LOC107667795,LOC107740990,LOC107550112 non-coding upstream 158774 6577825 ~ 6578301 (+)
G124725 NA non-coding upstream 198083 6538546 ~ 6538992 (+)
G124711 NA non-coding upstream 440639 6295930 ~ 6296436 (+)
LOC122362614 NA non-coding upstream 446174 6290522 ~ 6290901 (+)
G124783 NA non-coding downstream 1007 6760783 ~ 6766466 (+)
G124793 NA non-coding downstream 45707 6805483 ~ 6805688 (+)
G124795 NA non-coding downstream 54548 6814324 ~ 6814635 (+)
G124799 NA non-coding downstream 76924 6836700 ~ 6836922 (+)
G124866 NA non-coding downstream 167848 6927624 ~ 6927950 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other upstream 196168 6539247 ~ 6540907 (+)
G124707 NA other upstream 445150 6291491 ~ 6291925 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other upstream 707954 6020549 ~ 6029121 (+)
G124661 NA other upstream 757793 5976210 ~ 5979282 (+)
G124612 v2ra17,LOC107568349,LOC107568268,LOC107703349,LOC107695207,LOC107722082,LOC105904790,LOC107695201 other upstream 1107422 5623453 ~ 5629653 (+)
G124881 LOC102215562 other downstream 266542 7026318 ~ 7027135 (+)
G124914 NA other downstream 412850 7172626 ~ 7173020 (+)
G124920 NA other downstream 418063 7177839 ~ 7178276 (+)
gins2 gins2,psf2 other downstream 1235796 7995572 ~ 8007882 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other downstream 1409089 8168865 ~ 8532072 (+)

Expression


Co-expression Network