LOC122362721 (lamb1)


Basic Information

Item Value
gene id LOC122362721
gene name lamb1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 7088818 ~ 7090566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264293.1
ATGCTGGCCTCACAAAGAAGAAAGGAGGCGACAGATGTGAAAGACACCGCTGAGATGGTGAAGGAAGCCTTGCAACAGGCCAGCGCTGACATCAAGGGAATACAAGACCTGCTGCTAAAACTGAGTAACACCACTCGAAGGCTGCTGAAGTTGGAAAGCGATGTAgctttgctgaaagaaaaggcaCTCAACACCTCCACCAGCACGGAGAAAGAGGCAGACAGCATCAAGGCACTTGCTGAGAAGCTCAAAAAGGATCTGGATTCAGAGCTGAAGGACAAGTACAGTAGTGTCGAGGAGGTGatcacacagaaagcagaagGAGTGGCAGAGGCcaagaaaagagcagagaaactCCAACAGGAAGCCAAAACTCTGCTGCTACAGGCCAGCGACAAACTCCAGCTGCTAAAAAatCTTGAGAAGAACTATGATGAAGATCAGAAGCTGCTGGAGGACAAGGCCAATGAACTGGTGGATCTGGAGAAGGCTGTGAAAGAACTGCTTCAGGAgatcagtcacaaagtcaccGTCTACAGCACCTGA

Function

symbol description
lamb1 An extracellular matrix structural constituent. Involved in several processes, including endodermal cell differentiation; neurogenesis; and substrate adhesion-dependent cell spreading. Located in basement membrane and extracellular space. Part of laminin complex. Implicated in autistic disorder and lissencephaly 5.

NR:

description
PREDICTED: laminin subunit beta-1

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264293.1 True 546 mRNA 0.49 5 7088818 7090566

Neighbor

gene id symbol gene type direction distance location
def8 def8,LOC107742104,LOC107755590 coding upstream 69769 6961115 ~ 7019049 (+)
mc1r mc1r,tubb3,LOC107662306,LOC107706122,LOC103037812 coding upstream 150660 6935956 ~ 6938158 (+)
tcf25 tcf25 coding upstream 178743 6872800 ~ 6910075 (+)
LOC122323232 cyba,LOC107550118,LOC107661987,LOC107571231,LOC107715044,LOC107698019,LOC100705310 coding upstream 217336 6868863 ~ 6871482 (+)
pdcd5 pdcd5,LOC107550119,LOC107690755,LOC107571235 coding upstream 244491 6841363 ~ 6844327 (+)
LOC122362727 NA coding downstream 755434 7846000 ~ 7848851 (+)
emc8 emc8,LOC106587369 coding downstream 899967 7990533 ~ 7994775 (+)
si:ch211-220f16.2 LOC107711757,LOC107567291,LOC107667970,LOC107674998,LOC107565346 coding downstream 1052933 8143499 ~ 8168224 (+)
LOC122362731 NA coding downstream 1712417 8802983 ~ 8806025 (+)
LOC122362732 spon1,LOC107728096,LOC107567810,LOC107554002,LOC107741890 coding downstream 1908783 8999349 ~ 9009049 (+)
G124907 NA non-coding upstream 29221 7059351 ~ 7059597 (+)
G124904 NA non-coding upstream 33045 7055392 ~ 7055773 (+)
G124902 NA non-coding upstream 54151 7034443 ~ 7034667 (+)
G124877 NA non-coding upstream 147716 6940759 ~ 6941102 (+)
G124867 NA non-coding upstream 160278 6928327 ~ 6928540 (+)
G124913 NA non-coding downstream 81453 7172019 ~ 7172434 (+)
LOC122323033 NA non-coding downstream 226656 7317222 ~ 7319011 (+)
LOC122362591 NA non-coding downstream 263934 7354500 ~ 7355149 (+)
LOC122323061 NA non-coding downstream 478493 7569059 ~ 7572136 (+)
LOC122362701 NA non-coding downstream 691626 7782192 ~ 7784566 (+)
G124881 LOC102215562 other upstream 61683 7026318 ~ 7027135 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other upstream 547911 6539247 ~ 6540907 (+)
G124707 NA other upstream 796893 6291491 ~ 6291925 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other upstream 1059697 6020549 ~ 6029121 (+)
G124661 NA other upstream 1109536 5976210 ~ 5979282 (+)
G124914 NA other downstream 82060 7172626 ~ 7173020 (+)
G124920 NA other downstream 87273 7177839 ~ 7178276 (+)
gins2 gins2,psf2 other downstream 905006 7995572 ~ 8007882 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other downstream 1078299 8168865 ~ 8532072 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other downstream 1085787 8176353 ~ 8536948 (+)

Expression


Co-expression Network