LOC122362770 (cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015)


Basic Information

Item Value
gene id LOC122362770
gene name cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22416782 ~ 22421246 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264327.1
ATGGCAACGCGAATCGACAAAGAGGCTTGCAGAGAAGCATACAATCTGGTGCGAGACGACAGCTCAGATATATGCTGggcaTCTTTTAAGTATGACGGCTCTACCATCGTACCGGCTGGTCACGGGTCCGACTACGAAGAATTCAAGAGTCAGTGCACAGTCTTCGGGTTCGTAAGGATCACAACGGGTGATGCCATGAGCAAGCGCGCCAAATTCACCCTCATCACCTGGATCGGCGAAAACATCAGCGGACTGCAGAGAGCCAAGATTAGCACTGACAAGACACTGGTAAAAGACATCGTGCAGAACTTTGCCAAGGAGTTCATGATAAGTGATCCCAGAGAGCTGGAGGAGGAATATCTCCTTGGCGAGCTGAAAAAACGTGGCGGGGCCAACTCACGCCATGGGCCGAATAGAACTTGGGGCGGGTTTTGGGGCATTTTTGTAACTGTAGTTTTTGAATGA

Function

symbol description
cotl1 Predicted to enable actin filament binding activity. Predicted to be involved in regulation of actin filament polymerization. Predicted to be active in cortical actin cytoskeleton and plasma membrane. Predicted to colocalize with actin filament. Is expressed in blood; epidermis; and periderm. Orthologous to human COTL1 (coactosin like F-actin binding protein 1).

NR:

description
PREDICTED: coactosin-like protein

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264327.1 True 465 mRNA 0.51 5 22416782 22421246

Neighbor

gene id symbol gene type direction distance location
LOC122363070 mical3a,LOC107559327,LOC107673136,LOC107672585,LOC108414616 coding upstream 17546 22374588 ~ 22399236 (+)
LOC122362522 LOC107670367,LOC107559271,LOC107673148,LOC107738440,LOC556054,LOC108414180,LOC108264794,LOC101481124 coding upstream 154813 22241472 ~ 22261969 (+)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107738443 coding upstream 390325 22016312 ~ 22026457 (+)
mical3a LOC107673136,LOC108414616,LOC108264267,LOC106573174,LOC106561386 coding upstream 401326 21954303 ~ 22015456 (+)
lepa NA coding upstream 494109 21920107 ~ 21922673 (+)
si:ch211-260p9.3 LOC107587040,LOC107666218 coding downstream 31200 22452446 ~ 22467259 (+)
LOC122362804 cmip,LOC107684659,LOC106560887,LOC106573687 coding downstream 77011 22498257 ~ 22524172 (+)
LOC122362807 srgap1a,srgap1,LOC107670373,LOC108264626 coding downstream 162671 22583917 ~ 22622188 (+)
LOC122362983 hipk2,LOC107722467,LOC107568633,LOC107738404 coding downstream 201878 22623124 ~ 22636865 (+)
tmtc2b LOC107673141,LOC107722480,LOC107670376,LOC107738412,LOC107587029,LOC108414015 coding downstream 246951 22668197 ~ 22762542 (+)
LOC122363071 NA non-coding upstream 28167 22387599 ~ 22388615 (+)
G128329 tspan9a,LOC107559293,LOC107738414,LOC107587031,LOC107672591,LOC107084745,LOC108414266 non-coding upstream 306324 22109473 ~ 22110458 (+)
G128318 NA non-coding upstream 347829 22033671 ~ 22068953 (+)
LOC122323089 NA non-coding upstream 581761 21694446 ~ 21835021 (+)
G128251 NA non-coding upstream 775153 21638410 ~ 21641629 (+)
G128377 NA non-coding downstream 113220 22534466 ~ 22535424 (+)
G128379 NA non-coding downstream 115529 22536775 ~ 22543533 (+)
LOC122362809 NA non-coding downstream 117136 22538382 ~ 22539895 (+)
G128385 NA non-coding downstream 129199 22550445 ~ 22551614 (+)
LOC122362810 NA non-coding downstream 139145 22560391 ~ 22563204 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 4825 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 1775723 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 1816263 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 1860155 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 1867425 20545992 ~ 20549357 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 13560 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 1035854 23457100 ~ 23736848 (+)
G128858 NA other downstream 2028519 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 2162599 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 2873497 25294743 ~ 25309740 (+)

Expression


Co-expression Network