LOC122362775 (cdh13,LOC107722459,LOC107684661,LOC107738387)


Basic Information

Item Value
gene id LOC122362775
gene name cdh13,LOC107722459,LOC107684661,LOC107738387
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24134413 ~ 24181542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264330.1
TATAGGAGATCCTCGGCCTATCAGACATGATGCCGTACCGATCCAAAAGGTCCCTGCTGGTGCCCCCCATGTTTGTCCCAGAGAACCAGCGAGCCCCCTTCCCCAGGTTAATTGGAAAGGTGATCTCATCTGACATGAAGGAAGACCACATCTTCCGTCTGACGGGAAGGGGAGCAGATCAAGACCCTAAGGGTGTGTTCAGCATCAACCGACTGACGGGAGAGGTGGCAGTCAGCAGAGCTCTGGATCGAGAGGCCATTGCGTACTACCATCTCCAGGTATCCACCACTGACCTAAGTGGCAGATTGGTAGAGGGACCAGTAGACCTGGACGTGTCTGTTATTGACCAGAATGACAACCGTCCGGTGTTCAAGGAGCCGCGTTACTCTGGGGAGGTTCTGGAGGGCTCCCCCACAGGCACTACAGTGATGACCATGACGGCTTACGACGCGGACGATACCAACACGGACAACGCTGTACTACGCTACATCATTGTGAGACAGCTGCCCGATAAACCTTCGCCCAATATGTTCTACATCGACCCGGAGAGAGGTGACATTGTCACTGTGATAGCACCCCATCAGCTCGATAGAGAGACTCTTCCAACCACGCAGTACGAGCTAGAAATTGTGGCGAAGGACATGGCGGGAAGTGAGGTGGGACTGACAGGAACTGCAACAGCAACcatcaccatcacagacaggaACGACCACGCACCTGAGTTTACACACTCACTGTTTCAGGCATCAGTAAATGAGGGATCAACTGGGGTGGTTGTTAACCTGACAGTGGACGACAGAGACGACCCTGCCACTGGAGCCTGGAGAGCTATCTACTCTATCATCAATGGAGATCCCAACCAGAACTTTGAGATACAGACCAACCTGGACAACAATGAAGGGATGCTGTCAGTAATAAAGcCTCTGGACTATGAAAGTTCAATGTTTAACACACTGCTAATAAAAGTGGAAAACGAAGACCCTCTGGTTCCTGATGTTGTGTATGGCCCCAGCTCTACAGCGACGGTTTACATTACAGTTATGGATGTGAATGAAGGACCTGTGTTCTTCCCAGATCCTCTGGTTGTCATCAGAAGAGAAAATATTCCCATAGGGAGCTTTGTGGCCATGCTGAATGCTACTGATCCGGACTACCTACAGACGCAGAGCATAAGGTTCACTGTATTGAGAGACCCAGCAGACTGGCTGATCGTGAACCCCTTCAAAGGCAATGTCACCACCAGGGCGATACTGGACCGCGAGTCTCCACACGTTCACAACAACCAGTACACTGCTCTCTTCATGGCCACAGATAACGGAAGTCCACCCGCTTCAGGCACGGGTACGCTGATAATCACTCTGGAGGACGAGAACGACAACGCTCCCTACGTCTTCCCCTCCGTGGCCCGCGTGTGTGAGGACGCTAAAGACATGAATGTGGTGGTGATCGGGGGACGAGACAAGGACATTCATCCTAATACGGATCCTTTCAAGATCGAACTTGGCAAGCAGCCAGGACTGGAGAAAACATGGAAAATCTCCAGGATCAATGACACTCACTCCCAGATTATGTTGCTGCACAGTCTGAAAAAGGCTAACTACAACCTGCCGCTGGTTCTGACCGACTCTGGCGTGCCTCCAATATCTAACAACACAGAACTGAAAGTTCAAGTGTGCACCTGTAAGAAGAACAGAATGGACTGCAGCCGTGCTGGCTCCATCCAAACAAACCTCTTGCTACTGCTCGGCCTGGTTCTGCTCTCCATCCTCTGTAAGTATCCTTTCATTCCACCCCAACCTGTACGTTTTTGTTCCTTCAGGTATTCCATGGGCAGTGATCCCGATAACTGGCTAAGTATATCTGCAGACACCGGATCGATTAAAGTCGCAAAAGAGATGGATAGAGAATCTATTCATGTTAAAGATGGAAAATACACCGCTATCATTTTGGCCACAGATAATGAAGTAAAACAAAATCAAGCGACTGGCACAGGAACCCTGGTAATTGATTTGGAGGATGTAAATGACAACGCTCCCTTTATTGTTGAAAGGAATATACAAATGTGCAATCGTGAGGCGCCCCCAGTTCTTCTCTCTATAGTAGACCACGATGGACCTTTATTTGCTCAACCCTTTAATGTTGAGCCCCAAGGAGAAACGAGTAAAAACTGGTCAACCATAATGAACGCCACATTAACTGGAGTTTTTCTGAAACTCGACTCTACATTGGAGCAGGGAGACTACAATGTTGTCCTGAGAGTGTTTGATAGATACAAGCTGTTTAAGGACAGCACCATTCGAGCAACGGTGTGTGACTGTGCCAGAGAAGAGTTTCATTGTACTGACAAACAGTTAGCAGGGATGGGACTGTCTGGAGTGCTTGGGATCCTGGGAGGAATCTTGGCTCTGTTGTTGCTTGTTCTTCTTCTGCTTTTATTCATGAGGAGAAGAGGCAGCACCAAAAAAGAACCCCTCCTCGCTGAAGATGATATTAGAGATAACATCTACTATTATGATGAGGAAGGCGGTGGAGAAGATGATCAGGATTATGATCTGAGTGTGTTGCATCGAGGCCTTGACAACAGACCGGAAGTGTTCAGAATAGAGGATGTGGCACCTACTTTTCTGCCAGCACCTCAGTATAGACCACGACCTGCCAACCCTGAGGAGATTGGGACATTCATTGATGACAATCTGAAGGCTGCGGATAACGACCCCACTGCACCTCCCTATGACTCCCTGTTGGTGTTTGACTATGAAGGAGGAGGCTCAGATGCAGGTTCACTCAGCTCCCTCAACTCTTCCAGCTCAGGACACGACCAAGACTATGACTTCCTCAATGAGTGGGGCCCACGCTTTAAGAAGCTGGCGGACATGTTTGGAGGAGGAGAGGATTAAGCACACGGAGAGGCACATTGATGGTTGCTAAGTACAGAAATGAGAATTTTATATTACACTTCAGTCTGGTGATTCACATACTGTTTAAAGTTGGAACTGGATTAATGGCACTGTTCGTGCATCAGCATAAACAGATTCTTTGActtgaagtgtttttgttttgtttttttgtttttcttgttataGAGCAGCcatctgcaattttttttttttttttttcgtccttGACTTGACCCCTTTATAAATGGAGCTCCTAATCGaaaagttttgatatttgcTCTGGTTGCTCAGTGTGTAAAAAGCTATGATATGGCTTAAGATTTTTGTCCAAAGCTGTTTaactgtgtgttttatgtaatgCTTTTTGTTACCTTTTGTTAACTTGGCATTAAAGATTGATTTAAAGCATGATTTACACTGTAAATGTACCATTTTTGAAAAAGCACtgatttttcaaaaactttgTATGATGTGCAGGTGTCTTATTTCTATCCACTTTTCTGTCAGCTGCAAGGATGTTGTCAAATTCTTTTATATAGTTATGATTGAAGCATTGTTTTaaactgcatattttattaaacaaattacttTTA

Function

symbol description
cdh13 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within apoptotic process involved in blood vessel morphogenesis. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Human ortholog(s) of this gene implicated in breast cancer (multiple); lung non-small cell carcinoma; reproductive organ cancer (multiple); and urinary bladder cancer. Orthologous to human CDH13 (cadherin 13).

NR:

description
PREDICTED: cadherin-13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264330.1 True 3490 mRNA 0.46 16 24134413 24181542

Neighbor

gene id symbol gene type direction distance location
uri1 uri1,LOC107553985,LOC107684674,LOC107670159,LOC107583840 coding upstream 164354 23963028 ~ 23970059 (+)
spata2l LOC107670151,LOC107748780 coding upstream 173390 23958161 ~ 23961023 (+)
vps9d1 vps9d1,LOC107749294,LOC107553982,LOC107670156,LOC107748773 coding upstream 182202 23937000 ~ 23952211 (+)
utp4 utp4,LOC107749295,LOC107553989,LOC107748774,LOC107583899 coding upstream 198103 23928290 ~ 23936310 (+)
wfdc1 wfdc1,LOC107553961,LOC107749317,LOC107684670,LOC107583842,LOC107670154 coding upstream 206825 23915929 ~ 23927588 (+)
cry1b cry1ab,LOC107672239,LOC107553944,LOC107583830 coding downstream 95740 24277282 ~ 24286775 (+)
zgc:153031 zgc:153031,LOC107664682,LOC107583831,LOC107672313,LOC107553959 coding downstream 105596 24287138 ~ 24291459 (+)
si:ch73-62b13.1 si:ch73-62b13.1,LOC107749314,LOC107740436,LOC107672215,LOC107553958,LOC107583921,LOC107664683,LOC108425440 coding downstream 126634 24308176 ~ 24314980 (+)
si:dkey-103i16.6 si:dkey-103i16.6,LOC107749280,LOC107664689,LOC107553976,LOC107672161 coding downstream 157349 24338891 ~ 24350157 (+)
slc17a8 slc17a8,LOC107553956,LOC107672209,LOC107686235,LOC107583818 coding downstream 279374 24460916 ~ 24472951 (+)
G128772 NA non-coding upstream 68310 24058353 ~ 24066103 (+)
G128770 NA non-coding upstream 71142 24056720 ~ 24063271 (+)
G128753 NA non-coding upstream 104596 24028489 ~ 24029817 (+)
G128725 NA non-coding upstream 347250 23785024 ~ 23787163 (+)
G128699 NA non-coding upstream 774856 23358451 ~ 23359557 (+)
G128803 NA non-coding downstream 115567 24297109 ~ 24297333 (+)
G128804 NA non-coding downstream 116067 24297609 ~ 24297845 (+)
G128816 NA non-coding downstream 163658 24345200 ~ 24382712 (+)
G128854 NA non-coding downstream 249626 24431168 ~ 24431809 (+)
LOC122363046 NA non-coding downstream 252049 24433591 ~ 24446100 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 397565 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 1695734 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 1722456 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3493354 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 3533894 20589684 ~ 20600519 (+)
G128858 NA other downstream 268223 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 402303 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 1113201 25294743 ~ 25309740 (+)
mt2 NA other downstream 1164850 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1739725 25921267 ~ 26174156 (+)

Expression


Co-expression Network