wash1 (wash1,LOC107564895,LOC107686618,LOC107662897)


Basic Information

Item Value
gene id wash1
gene name wash1,LOC107564895,LOC107686618,LOC107662897
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20230154 ~ 20238801 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264419.1
GTCAGGCGTCACGTGACCCGAGAGTGCGGAAGTTTTGAGCCTGAAAGACCGAGCGCCTTCAAGCAGCTGAACGTCTGCGCTTTTTGACACATAAATGGTCAGGATGACTCAGAAACGTTACCTGGAGGGACAGGTGTACTCTGTGCCGCTGATCCAGCCGGATCTGAGGAGAGAAGAGGCTGTGCATCAGATCACTGATGCGTTACAATACCTGGAAACCATATCAACAGACATCTTTACTAGGGTGTCTCAGAGCGTGGAGAAGAACCGTGCACACCTTCAGTCCGTCACAGACCGGATCAAACTGGCTCAGGCCAGAGTCCAGAAGATCAAAGGAAGCAAGAAAGCCACAAAGgtgTTCTCCAGTGCCAAATACCCCGCTCCAGAAAAGCTGCAGGAATATTCGTCCATCTTTACAGGTGCAGTAGACCCCGCCTCCCAAAAGCAGCCCCGCTTTAAAGTTCAGAGCAAACTCCGCCCACTGGATGACAAGGCTCTGCAGgaGAAACTGATGTATTTGCCAGTATGTGTAAATGCTAAGAAGCGCTCTGAGGATGAGACAGAGGAGGGTTTGGGAAGTCTGCCGAGAAATGTCAACTCAGTCAGCTCCTTATTGCTGTTCAACACAACAGAAAACCTCTATAAGAAATATGTGTTTCTTGACCCTCTGGCGGGCGCCGTgactaaaacacacaccactCTAGAGACGGAAAAGGAAGATAAACCGTTTGACGCGCCGCTGTCGATCACCAAGAGAGAGCAGCTGGAGAGACAGACTGCTGAGAATTATTTCTACGTGCCAGACCTGGGACAAGTGCCTGAGATCGATGTGCCATCTTACCTGCCTGACTTACCTGGCATCGCTGATGACCTGATGTACAGCGCTGACCTCGGCCCAGGGTTCGCACCGTCTGTTCCTTCCAGCAACAGCATCCCAGAACTTCCTTCGTTTGGCACGGAGCATGACGAATCTAGTGGATCTGACTCTCATTTTAGGCTTGAGGCCCCGctctccacctcctccaccccTCCTCCACCAGAGCCGACTCGGGTATCAGTCCCCCCTGGAACATCCTTGGCTCCCCCTCCACCCCCACCTCCACCTATCACAGCAGACGGCACTGATGCCACGTCAAGTCAAGCCCCTCCCACAGGGACAGTGAAAGGAGCCCCTACTGAGGTGTTACAGCCATCGGACGGCCGGGCCAGTCTGCTGGAGTCCATCCGAAACGCTGGAGGTATCGGGAAAGCGAACCTCCGCAATGTAAAAGAGCGCAAgatggagaagaaaaaacagaaagagcaaGAGCAAGttGGGGCAGCGGTGAGCAGTGGAGACCTGATGTCTGACCTCTTCAATAAATTGGCCATGCGCAGGAAAGGTATCTCTGGTAAGGGCCCGGCGGGTGGAGACTCATCTGAAGCACCTGCCAGCTCCGGCAGCGCGTTCGCCAGGATGTCAGATGTGATCCCGCCCCTTCCAGCGCCGCAGCAACCCACCGCAGAAGATGAAGATGACTGGGAGGCGTAACCATGGCGACCCAGAGTTGAGTGCCAAATTCGAGATCGGAGGGCTGAAATCCTCATAGACGGGGTCTGGGGATATTGTCTCTCCAAGGAGAGCTGCGGAGTGTTAAGTGAGACGTTCGGTCTCTTATTTTGAAACCTGAAGGTCCATGAATTAAGTGTAAGATGATGTGTTCTATATGTCATTAAAGCCCTTATAGTCTGAAagattatattattaaagtcaacatgacaCAGAAATTCACTATTTGCATTCTTCATCAGGGCagattattaaatttttttttttgcaaatgtacattttcaagcaaatttgattactttaatatgtttataatattatatgataCTATTAAAGCGATACTGTTatactgtcaaataaaaaaaaaatcaatattttacagaacagctgaaatttacagtattatttaatttctaataaattaatttcttggCTTTCGAACTATAGCGCTACTATtgcaaccatttaaaaaaaaaataacgatttacaaaatacaaaaatttctataaatatggaaaaatcCCATCTCTGATGCATACTGTAGGTGATATTCTTCCTAGATGAGCTACAGTATGTAGCAGGGCACCTGGTATCCCATAATGCAGTGTGCTCGTTCATTTGATGAATGAACTGAAAGTGATATCGGCTATTTTTAACgtaatttaattcatattttacagACTAGCAAACATTAAGACAACTGGATTAACAAGGTGACTGTAAATACAGCCTATTAGCATGATTcatttgtgcataaaaaaaattcgCTTTTCATCTGACATCTCCTTCACAGAAGtaattagtaaatattaatattactcacTTTCACTCACATTATGGTTGTCTCATGTTGACTTTAGTAATAATTAACTGCActttttgatgaatatttttCACTACTTGTGTGACATCATGAAGTTGATGGTGAAATAGCCTTTTTTTCTTAACGAAACAATGTAAAAAGCGGCTTGTATTTTTTGATATTAGCATCTCTGGTATTAGTATCTTTAATACAGGCAATAAACTCTGTTGTTTTAGCCCA

Function

symbol description
wash1 Predicted to enable alpha-tubulin binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytosol; early endosome; and recycling endosome. Predicted to be part of WASH complex. Orthologous to several human genes including WASHC1 (WASH complex subunit 1).

NR:

description
PREDICTED: WAS protein family homolog 1

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0055038 recycling endosome membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0071203 WASH complex cellular_component
GO:0043014 alpha-tubulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18461 WASH1; WAS protein family homolog 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264419.1 True 2591 mRNA 0.45 13 20230154 20238801

Neighbor

gene id symbol gene type direction distance location
ptprq ptprq,LOC107705767,LOC107662847,LOC107564908,LOC107564907,LOC108413201,LOC107683214 coding upstream 32339 20160121 ~ 20197815 (+)
LOC122362491 LOC107736106 coding upstream 69976 20155466 ~ 20160178 (+)
otogl otogl,LOC107736094,LOC107686601,LOC107662850 coding upstream 75702 20121656 ~ 20154452 (+)
si:ch1073-390k14.1 LOC107600154,LOC107662899,LOC107736082 coding upstream 111722 20101629 ~ 20118432 (+)
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC107662902,LOC105906547 coding upstream 174847 20017374 ~ 20055307 (+)
fkbp4 fkbp4,LOC107686573,LOC107705800,LOC107564896,LOC107662895,LOC107735478 coding downstream 11601 20250402 ~ 20256447 (+)
b4galnt3b LOC107705801,LOC107686572,LOC107564911,LOC107735491,LOC107662894 coding downstream 20968 20259769 ~ 20278496 (+)
c2cd5 c2cd5,LOC107686569 coding downstream 47664 20286465 ~ 20311133 (+)
lmf2a lmf2a,LOC107564898,LOC107686567,LOC107600131,LOC107662891,LOC107735523,LOC107705770 coding downstream 72978 20311779 ~ 20321200 (+)
dnaja2b dnaja2l,dnaja2,LOC107735561,LOC107705812,LOC107686561,LOC108438176,LOC103026191 coding downstream 125930 20364731 ~ 20371597 (+)
LOC122363139 NA non-coding upstream 5570 20221304 ~ 20224584 (+)
G127766 iqsec3b,LOC107564909,LOC107705799,LOC107735425,LOC107662846,LOC108413205 non-coding upstream 14923 20202748 ~ 20215231 (+)
G127663 NA non-coding upstream 238518 19985741 ~ 19991636 (+)
G127637 golim4,LOC107662907 non-coding upstream 305352 19781765 ~ 19924802 (+)
G127632 NA non-coding upstream 603633 19626153 ~ 19626521 (+)
G127780 NA non-coding downstream 17911 20256712 ~ 20281295 (+)
G127785 NA non-coding downstream 86529 20325330 ~ 20383758 (+)
G127800 NA non-coding downstream 135053 20373854 ~ 20375835 (+)
G127860 NA non-coding downstream 323282 20562083 ~ 20572310 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding downstream 347250 20586051 ~ 20588863 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 136553 20067678 ~ 20093601 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other upstream 214448 20003004 ~ 20015706 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other upstream 941598 19269611 ~ 19288556 (+)
G127500 NA other upstream 1388619 18730690 ~ 18841535 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other upstream 1577990 18646362 ~ 18652164 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other downstream 307191 20545992 ~ 20549357 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other downstream 312347 20551148 ~ 20556627 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other downstream 350883 20589684 ~ 20600519 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other downstream 396044 20634845 ~ 20641059 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 2162143 22400944 ~ 22411957 (+)

Expression


Co-expression Network