tmod2 (tmod2,tmod3,LOC107700589,LOC107746940,LOC107747615,LOC107704266,LOC107550632,LOC108440576,LOC108264495)


Basic Information

Item Value
gene id tmod2
gene name tmod2,tmod3,LOC107700589,LOC107746940,LOC107747615,LOC107704266,LOC107550632,LOC108440576,LOC108264495
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10297497 ~ 10320648 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264789.1
TCTGGTTTCCTGTGTTACCGCCCTTGGGCTGAGACAGTGAAGACGGGTGCGGgagttttttttgctttccgACCAGGAATAGGTCAATAAAGGGTGAAACGCTTGCAGGAATTTCACTAAGgCATTGAATCGAACTGGACAGCAGTCTCTCTCTGACGGACGGCGTGAACCATGGCACTTCCGTTTAAGAAAGATCTGGAGAAGTATAAGGAGATTGATGAGGATGAGATTCTCAACAAGCTGTCAGAGGAGGAACTCAAGCAACTGGAGAGCGCTCTAGAGGAGATCGACCCAGAGAATGCTTTGCTGCCAGCCGGAATGAGGCAGAAGGACCAGACCTCAAAAGCAGCCACTGGTCCTTTTAACCGTGATAAACTGCTACAGTATCTGGAGAAGGAGGCTATGGACTATAAAGACAGAGATGATTATGTCCCCTTCACTGGAGAGAAGAAAGGAAAGGTATGGATTCCCAAAAAGAAGCCAATCGAGATCCATCAGGAGGAAGCCACGACCCTTGACCCGGAATTGGAAGAGGCACTTTCTAGCGCTACTGACACAGAACTGCATGACCTGGCAGctATTCTTGGAGTGAACACACTGGTGACAAGCACACAGAGTTATGATGGCACCTGTACAGATGGCTATAACAATGTTATTAAGGGAGAAAAGGTAAAGCCAGTTTTTGATGAGCCACCAAACCCTACAAACGTGGAGGAAACTCTTCAGCGGATAAAGTCCAATGATTCCTCACTGACTGAAGTAAATCTCAACAATATAAAGAACATTCCAATCCCGACTCTAAAGGACTTGGCTAAAGCCATGGAGAGGAACACTCATGTGAAGAAGTTCAGCCTGGCTGCCACCAGAAGCAATGACCCTGTTGCCATGGCTTTTTCAGACATGTTACGAGAGAATAAGATGCTAAAAAGTTTAAATCTGGAGTCTAATTTTATCACGGGCGCAGGAGTTCAGTCTCTGGTAGAAGCTCTACGGGACAATGACACGCTTACAGAGATCAAGATTGACAACCAGCGGCAGCAGCTCGGTACGTCGACAGAGATGGAGATCGCTAAGATGCTGGAGCAGAATACAAGTATTGTGAAGTTTGGGTACCACTTCACCCAGCAGGGTCCCAGATCCCGTGCCGCTGCCGCAATCACAAAAAACAATGACCTGGTGCGGCGGAGGCGAGTAGAGAGGGACGTGTAGAACAtattctcctctctctctctctctctctcacaagcTCATCAGACTCGTGTGCCAAACCCTCTGAGGGAGCCGCTTCACCTGAAGAAGGGACACAACTGGATACTTTGCTTCCCTAATGTTAATACTCAATGATctttttatgttgtattattattattattattattgttgttaattgttgtttgtttttatagctGCAACTCTTTTGCAgccgttttttttgtttgctcgTGTAAAACcttttctgctcttttctttGTAAAAGTTCTTCGACATGAAACTAAACAGGTTGCAATGGATACACACAACTAGCACGACAAGCGCTATTGTGATCTCTTAACGGATGGGCCGGACCAGAACCTGGCGCCCACGTTCACTCCGAACAAATCTAGACTCAACTGGACTGGATCTGCTGTGTTTCCCCCGCTTAATGTGAGCTAAATCTAGATATCGAGTCTGGGTTTGGAGCACGGGTTTCCTCAGAGCCAACGAGAGCCAAGCTGTTCGTAACAGACACTCCTTAATAAAAATCTTCTATTTTCTTGCTGTTAACTTCACCGTGAGCGTGAGAGACGATGTTGGGTTGCGCGTGGATGTTTTTGGGCAGCTGGGTCGTCTCAAACTCTCAGCTTCCACACTACGCACCACGATTGAGACAATTCATATTGTAAACTTCACCTCTATTCCAGACACACGCCAGCTGATACCGTGCGTCTGAGGAGTTACAGCGCTAATTTTAGATCAGCGCCCCATTTTCAACAATTGTCTTTGAAAATGGAAAGATTTTTATTAGATCAGCACTAATGACAACCTTGGGCGTGTAAATGAAAGTCAAAGATTGACAGGATTCACGTAGGACTTAAAAACTTCAGAGCAATGCACTAAGGGATCTTttcgtttattttattatttttaacacggGAAGTGAGCATTTGTGTAATTTAGTTATCAGTTACGGATTGAGATGAGAGTATCCTCCTTGTAGATACATCTGAAATGGCTTTTCTAATACCATGCCAAAGACTAACACCTAAATACTCTCGTTTTCTAGACTTTCAAGCTGAGGTCAGACAGGAAATAGTTTTGGATGTCATCTTTTGAGTTTATTAAAGGTATAATTCACCATAAAAgataatgctaaatatattgCCCTGAATTATTTCGAAGTTgtattttgctgttatttttttttaatagaatacaaaaggtaattttttttttttttttttaagtattttctcATGGTAACCATGGTTATCAAACACcttgtacaatatttttttttttatgcaggttaggacaacattttaaattgttcacTCTAATTGGTTTACCAACAGCCCATCGCCAAGTGGCTTGGAATGTAACGCACAAATTTTGTTGGAAAAAATTGTGGCCTTACGATTcccattcaaaaaaataaacagatgcaGGATTGGAACAACGTGAGTGAGCAAATGGTGGTGGATTATTCCTTTAGTTTATctagaagagtttttttttttgaagcacaTGGCCTGTGCGAGGGAGGAAATTAGGGAACTAGTTGGAACGAGAGCGAGAGGGACGAGTAAAGTTTCATCTTAAATAGCAACCGATTCTGTGAGCATTCAGTGGTCCTGGTGCGGCCAGAGCCCCGAACATACATGCACGTTTGTGATCGCATGCATGTTTGCAACGTAAAGCTTTATCTTTTCACTAAAGCGATCTAACATGCTTTCGTAACAACGGTGTAAAATACTGAATTAACCTTAATACCGCTTGCCATTTTCTGTGAGTTTGTACATCCTGCGAGGTTCATTGATTGTGGTGTATAACGTAGAGCACAGGCGATTTGGCACGTTTTTTTGAGAAAGGTGGTGAAGCCGCCAAATGGACCTTCTGCACAAAAGTACGGCATCTCTGGCGAAGCAGTCGGAGCATGCCCGGTATGGATTATATAGCTGGATTACACAGGGGAACATGTTGTACACCTGCTTTAATGCAAAAGCTAGGACCAAGTTTGAATTGTTTCTTTTCTCACCTTGTCGTTAAGCTTCATTGTTTTGTACCGTTTTGTTTTGTAAGAGCCTTGTGTATCAATTGACTTtgagttttttgtttgtctttcatttttctttgaacaaaTGCTGAATTGTGTGtatgaagtcttttttttttttttttttttttttttttttttttcacgttatGGTTCATGTTTCATTCCATCTTTCATTGATTATGGGTTAAAGGTTCATGCTTTGCAGAAAGCTTGTGCTTGTAAGAAAGAACTCTGCAATCTTACATTGGGTTCATTTGAAATATCCATCTCAAATCCTCTTCAGAAGATtccacacattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaccatgtAAATGAACGCCTCTTATATTGCCATAATTTTGTATGTTGATACTACATGTCTGGATTTCAGAAGAGGAAATCTTACTATGTACTGTTAATAACACAAATCTGTAAAGTATCAGACGTCctcaataaaatgtatgtttttacaaa

Function

symbol description
tmod2 Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Orthologous to human TMOD2 (tropomodulin 2) and TMOD3 (tropomodulin 3).
tmod3 Enables cadherin binding activity involved in cell-cell adhesion. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within actin cytoskeleton organization; erythrocyte development; and positive regulation of mitotic cell cycle phase transition. Located in adherens junction.

NR:

description
PREDICTED: tropomodulin-3

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264789.1 True 3786 mRNA 0.40 10 10297497 10320648

Neighbor

gene id symbol gene type direction distance location
bcl2l10 bcl2l10,LOC107747612,LOC107700593,LOC107588535,LOC107704269 coding upstream 83011 10209353 ~ 10214486 (+)
gnb5b gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270 coding upstream 88347 10196804 ~ 10209150 (+)
LOC122362596 NA coding upstream 104337 10190770 ~ 10193160 (+)
LOC122362557 NA coding upstream 136571 10148075 ~ 10160926 (+)
LOC122363015 myo5a,myo5aa,LOC107746947,LOC107712751 coding upstream 495926 9751257 ~ 9801571 (+)
lysmd2 lysmd2,LOC107746939,LOC107747616,LOC107704265,LOC107588532,LOC107700588,LOC107550629 coding downstream 8294 10328942 ~ 10335753 (+)
acadl acadl coding downstream 31927 10352575 ~ 10361312 (+)
LOC122363031 LOC107692742,LOC107738533 coding downstream 423739 10744387 ~ 10761544 (+)
vwa7 vwa7,LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107692747,LOC107557822 coding downstream 539165 10859813 ~ 10870796 (+)
LOC122362996 si:ch211-132b12.1,si:ch211-132b12.2,zgc:158427,zgc:174946,LOC107715134,LOC107679003,LOC107588539,LOC107572724,LOC107679008,LOC106581333 coding downstream 551667 10872315 ~ 10877836 (+)
G125344 NA non-coding upstream 9157 10284638 ~ 10288340 (+)
G125341 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding upstream 48189 10248140 ~ 10249308 (+)
LOC122323099 NA non-coding upstream 162409 10133971 ~ 10135088 (+)
G125254 NA non-coding upstream 234717 10057741 ~ 10062780 (+)
G125253 NA non-coding upstream 242440 10054812 ~ 10055057 (+)
G125352 NA non-coding downstream 21119 10341767 ~ 10343454 (+)
G125353 LOC107700587,LOC107746952,LOC107588544,LOC107588531,LOC107747623,LOC107704264 non-coding downstream 24121 10344769 ~ 10348696 (+)
G125356 NA non-coding downstream 30770 10351418 ~ 10351755 (+)
G125359 NA non-coding downstream 42283 10362931 ~ 10363236 (+)
LOC122362497 LOC107700584,LOC107746936,LOC107588541 non-coding downstream 83766 10404414 ~ 10408816 (+)
G125192 NA other upstream 932009 9359436 ~ 9365488 (+)
LOC122362511 cmc2,LOC107711752 other upstream 1749774 8544699 ~ 8547723 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other upstream 1760549 8176353 ~ 8536948 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other upstream 1765425 8168865 ~ 8532072 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other downstream 95365 10416013 ~ 10425840 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other downstream 311829 10632477 ~ 10718085 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other downstream 504326 10824974 ~ 10837276 (+)
G125496 snrpd2,LOC106612977 other downstream 647437 10968085 ~ 10969767 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other downstream 905465 11226113 ~ 11233814 (+)

Expression


Co-expression Network