LOC122362997 (si:ch211-132b12.1,zgc:174946,zgc:158427,si:ch211-132b12.6,si:ch211-132b12.3,LOC107715134,LOC107679003,LOC107588539,LOC107572724)


Basic Information

Item Value
gene id LOC122362997
gene name si:ch211-132b12.1,zgc:174946,zgc:158427,si:ch211-132b12.6,si:ch211-132b12.3,LOC107715134,LOC107679003,LOC107588539,LOC107572724
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10889486 ~ 10897062 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264842.1
TCTTTTGTTCACCTTGCCTCTAAAGCAAACCAATGCAAAGCAAATCTCTAAAGCAAACCAATGACACATAAAATCCCAAAACGTACGAAAACCTACGACTACTATTACTGCTTCTGCTAATCATCATCATGTAGCGGCAGCAACTAACTGAgtgaacatatttttacatatttaaatgctcTTAAAACAAATGACTTTGCTTTACGTATTTTACCCGAGGCTTGCCAAACATCATGTTGAACAATGAATAAAAGTCTCACCCTCTATTTCTTTCTCATATACCTTTTGTCTTGCTCCACCGTAGAACTGCAGCAGGATCAGAGAAAAGTGCTAAATAACTGAGAGAAGAAATGAACAGGATACAAGGGCAAATAGAGGAGCGAGGGTACTGGGGCAGTAAAGCAGAGTTTCTTCTGGCTATTGCAGGGAATGTGGTTGGTCTGGGTAACGTCTGGAGGTTTCCTTACCTCTGTTACAGGAATGGAGGAGGGGCGTTCCTGATCCCCTACCTGGTGTTTGTGGTTACCTGTGGGGTGCCTCTGTTCCTGCTGGAGACGGCCATGGGACAGTACACACAGGAAGGTCCGATTACATGCTGGCATCGGCTCTGTCCTCTGGCTGAGGGTATTGGCTATGCAGGGCAATTGATATTGCTTTACAACTGCATGTATAGTATCATTCTGGCCTGGGCGCTTTTCTAcctcattttctctttcaatTCCCAACTTCCATGGGCCAGCTGTGATAACACCTGGAACACAGATGACTGTGTAAATCTTGCCGAACAAAACCTGACCCTCAACCAGACAAAGCTAATTCATTCTACACCTGCAGCTACTGAGTTCTGGGAACGCAGAGTGCTGTCTCTCTCTGGAGGTATTGAGGAGATCGGTCAGATCAACTGGGAGATTGTTCTGTGTTTAATTGCAGTTTGGGTCATATGTTATTTCTGCATCTGGAAAGGAATCAAATCTACAGGCAAGGTGGTGTATTTCACAGCTACATTTCCTTATGTGATGCTGCTGGTGTTGCTGATTCGTGGGTTAGCTCTTCAGGGGGTTGTGTTTTACCTGTACCCTGAACCGACCCGGCTCTTTGACCCACAGGTTTGGATGGAGGCAGGAACTCAGATCTTTTTCTCCTACAGTGTGTGTTTCGGCTCTCTCGTCACACTAGCAAGTTATAATCAATACCATAACAACTGCTACAGGGACTGTGTGCGGCTTTGCCTTCTGAACAGTGGCACCAGTTTAGTGGCAGGTTTTGCTGTGTTCTCAGTCCTGGGCTTCATGGCTAATGCGCAGGGCGTCCCTATTGAGGAGGTAGCAGAATCAGGTCCAGGACTAGCGTTCATAGCTTATCCACAGGCAGTAGCTATGATGCCTCTTCCTCAGTTGTGGGCTGTCTGTTTCTTCATCATGATTATTTTGCTGGGCCTAGATACACAGTTTGTTGGAATGGAGTCTATAATTACATCAGTGATGGACATGTTCCCCACGGTGTTGCGCAGAGCTGGTCGCCGAGAAATTTTTATCCTGCTCTTCTGTCTCACTTGCTTTTTTGGACAACTCCTCATGGTTACAGAGGGGGGGATGTATGTATTCCAGTTGTTTGACTACTACGCCTGTAATGGAGCTTGTATTCTGTTCCTGTCTGTGTTAGAGTCTCTGGTTATGGGTTGGATCTTTGGGGCTGAGAGGATGTTTGACATCATTGAAGACATGACAAAGTCACGACCcaattacattttcatgctGTGCTGGAAATACCTGACTCCTCTTGTGTCCCTGGTGTCTTTAGTTTATTCTATTGTGGAGTACAAGCCCCTCACTTTGAACCGCTGGTATGTGTACCCAGACTGGGCGTATGTACTAGGCTGGTTACTGGCCCTGTCCTCCATTCTGCTGGTGCCTGGGTGGGCGCTAGGCCGAATGTGTGTTGGGAAAGGAAGCCTGAAACAGCGTTGGTGCCACTTGTGTACTCCTGACACAAACCTCCCTCTCATCTATAAGCAAAGAGCTAAAGTCCAGGAAGAAACTTTCAACACAGGTGTTGAGGTGGAAGACATGGTCAGCAGCAACACAAACTAAACCCTCACTAAATATACTGTTGTGTTGAGAACAAACAATCATTTAACCTTTTGGGAAAAATCAGTAGCCTATTGATATTTCTGTGTTTACTTGTTTACCCTAGAAACAGCTATAGCATATGTGTGGGGTTATATTCAGCATGGAATATAGAATTGACAagagttattttattatttgtgatgtTTAAAACCAACACTGCTAATGTTACAGCTACTGAGATGAGATGCACAGACCAGATGAACATTTGACAGCATAATCTTTGATTTGAGATTCCCAAATTATCTGTCcccaaataaatacaataccattttaatttaacactaATACTATTCAGTGGCTTGTTTGGTTGTGTTCCTTTTTCCGTCACCTGGCCTAATGATGTCCTGCAAG
>XM_043264843.1
TCTTTTGTTCACCTTGCCTCTAAAGCAAACCAATGCAAAGCAAATCTCTAAAGCAAACCAATGACACATAAAATCCCAAAACGTACGAAAACCTACGACTACTATTACTGCTTCTGCTAATCATCATCATGTAGCGGCAGCAACTAACTGAgtgaacatatttttacatatttaaatgctcTTAAAACAAATGACTTTGCTTTACGTATTTTACCCGAGGCTTGCCAAACATCATGTTGAACAATGAATAAAAGTCTCACCCTCTATTTCTTTCTCATATACCTTTTGTCTTGCTCCACCGTAGAACTGCAGCAGGATCAGAGAAAAGTGCTAAATAACTGAGAGAAGAAATGAACAGGATACAAGGGCAAATAGAGGAGCGAGGGTACTGGGGCAGTAAAGCAGAGTTTCTTCTGGCTATTGCAGGGAATGTGGTTGGTCTGGGTAACGTCTGGAGGTTTCCTTACCTCTGTTACAGGAATGGAGGAGGGGCGTTCCTGATCCCCTACCTGGTGTTTGTGGTTACCTGTGGGGTGCCTCTGTTCCTGCTGGAGACGGCCATGGGACAGTACACACAGGAAGGTCCGATTACATGCTGGCATCGGCTCTGTCCTCTGGCTGAGGGTATTGGCTATGCAGGGCAATTGATATTGCTTTACAACTGCATGTATAGTATCATTCTGGCCTGGGCGCTTTTCTAcctcattttctctttcaatTCCCAACTTCCATGGGCCAGCTGTGATAACACCTGGAACACAGATGACTGTGTAAATCTTGCCGAACAAAACCTGACCCTCAACCAGACAAAGCTAATTCATTCTACACCTGCAGCTACTGAGTTCTGGGAACGCAGAGTGCTGTCTCTCTCTGGAGGTATTGAGGAGATCGGTCAGATCAACTGGGAGATTGTTCTGTGTTTAATTGCAGTTTGGGTCATATGTTATTTCTGCATCTGGAAAGGAATCAAATCTACAGGCAAGGTGGTGTATTTCACAGCTACATTTCCTTATGTGATGCTGCTGGTGTTGCTGATTCGTGGGTTAGCTCTTCAGGGGGTTGTGTTTTACCTGTACCCTGAACCGACCCGGCTCTTTGACCCACAGGTTTGGATGGAGGCAGGAACTCAGATCTTTTTCTCCTACAGTGTGTGTTTCGGCTCTCTCGTCACACTAGCAAGTTATAATCAATACCATAACAACTGCTACAGGGACTGTGTGCGGCTTTGCCTTCTGAACAGTGGCACCAGTTTAGTGGCAGGTTTTGCTGTGTTCTCAGTCCTGGGCTTCATGGCTAATGCGCAGGGCGTCCCTATTGAGGAGGTAGCAGAATCAGGTCCAGGACTAGCGTTCATAGCTTATCCACAGGCAGTAGCTATGATGCCTCTTCCTCAGTTGTGGGCTGTCTGTTTCTTCATCATGATTATTTTGCTGGGCCTAGATACACAGTTTGTTGGAATGGAGTCTATAATTACATCAGTGATGGACATGTTCCCCACGGTGTTGCGCAGAGCTGGTCGCCGAGAAATTTTTATCCTGCTCTTCTGTCTCACTTGCTTTTTTGGACAACTCCTCATGGTTACAGAGGGGGGGATGTATGTATTCCAGTTGTTTGACTACTACGCCTGTAATGGAGCTTGTATTCTGTTCCTGTCTGTGTTAGAGTCTCTGGTTATGGGTTGGATCTTTGGGGCTGAGAGGATGTTTGACATCATTGAAGACATGACAAAGTCACGACCcaattacattttcatgctGTGCTGGAAATACCTGACTCCTCTTGTGTCCCTGACTGGGCGTATGTACTAGGCTGGTTACTGGCCCTGTCCTCCATTCTGCTGGTGCCTGGGTGGGCGCTAGGCCGAATGTGTGTTGGGAAAGGAAGCCTGAAAC

Function

symbol description
si:ch211-132b12.3 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).
si:ch211-132b12.6 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).
si:ch211-132b12.1 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).
zgc:158427 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane.
zgc:174946 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264842.1 True 2480 mRNA 0.44 14 10889486 10897062
XM_043264843.1 False 1892 mRNA 0.46 13 10889486 10895874

Neighbor

gene id symbol gene type direction distance location
LOC122362995 si:ch211-132b12.2,LOC107572724,LOC107679008,LOC107679003,LOC107715134,LOC107588539,LOC106581333 coding upstream 85 10884597 ~ 10889401 (+)
LOC122362996 si:ch211-132b12.1,si:ch211-132b12.2,zgc:158427,zgc:174946,LOC107715134,LOC107679003,LOC107588539,LOC107572724,LOC107679008,LOC106581333 coding upstream 11650 10872315 ~ 10877836 (+)
vwa7 vwa7,LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107692747,LOC107557822 coding upstream 18690 10859813 ~ 10870796 (+)
LOC122363031 LOC107692742,LOC107738533 coding upstream 127942 10744387 ~ 10761544 (+)
acadl acadl coding upstream 528174 10352575 ~ 10361312 (+)
LOC122362532 LOC107711073,LOC107679025,LOC107714437,LOC107566685,LOC107684602,LOC100332250 coding downstream 110528 11007590 ~ 11028729 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 201292 11098354 ~ 11134641 (+)
veph1 veph1,LOC107563514,LOC107711033,LOC107679005 coding downstream 239989 11137051 ~ 11206596 (+)
ankrd67 si:ch211-203b8.6,LOC107684609,LOC107710859,LOC107691982,LOC107563505,LOC107714442 coding downstream 321476 11218538 ~ 11224508 (+)
tsen34 LOC107710838,LOC107684621,LOC107709810,LOC107563510,LOC107734988 coding downstream 340471 11237533 ~ 11240065 (+)
LOC122363043 NA non-coding upstream 39797 10845452 ~ 10849689 (+)
G125470 LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107557822,LOC107683099 non-coding upstream 102463 10785905 ~ 10787023 (+)
LOC122362658 NA non-coding upstream 286640 10601124 ~ 10602846 (+)
G125369 NA non-coding upstream 479886 10409318 ~ 10409600 (+)
G125367 LOC107588541,LOC107700584,LOC107746936 non-coding upstream 482098 10406970 ~ 10407388 (+)
G125481 LOC107679019,LOC107711015,LOC107714456,LOC107692743,LOC107557844 non-coding downstream 1102 10898164 ~ 10920333 (+)
G125480 rasa2,LOC107566682,LOC107714449,LOC107679023,LOC107679004,LOC107710946,LOC107684605 non-coding downstream 39303 10936365 ~ 11044066 (+)
G125540 NA non-coding downstream 401941 11299003 ~ 11299260 (+)
LOC122362586 NA non-coding downstream 410485 11307547 ~ 11309510 (+)
G125709 NA non-coding downstream 1006397 11903459 ~ 11903992 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other upstream 52210 10824974 ~ 10837276 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other upstream 171401 10632477 ~ 10718085 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other upstream 463646 10416013 ~ 10425840 (+)
G125192 NA other upstream 1523998 9359436 ~ 9365488 (+)
LOC122362511 cmc2,LOC107711752 other upstream 2341763 8544699 ~ 8547723 (+)
G125496 snrpd2,LOC106612977 other downstream 71023 10968085 ~ 10969767 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other downstream 329051 11226113 ~ 11233814 (+)
selenot1b selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894 other downstream 337269 11234331 ~ 11237147 (+)
trpc6b trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040 other downstream 433159 11330221 ~ 11345797 (+)
G125830 NA other downstream 1912388 12809450 ~ 12822781 (+)

Expression


Co-expression Network