LOC122363015 (myo5a,myo5aa,LOC107746947,LOC107712751)


Basic Information

Item Value
gene id LOC122363015
gene name myo5a,myo5aa,LOC107746947,LOC107712751
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 9751257 ~ 9801571 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264877.1
AATTGTGCTagcttttaaagtaataattatgtatAGTTATCTCTATCAAAGCGATAAATCaacaacttttgtttttgtcatatttctctagtaatacaattaaaattaaattagaatttttataattcaaatataaaataacagttaaCAATGGAGTAGATGATACGTGAGTGAAGTGAGCATGCTTGTGTCGtatgttatattttgttattgttcGTAGATTGGTATTGATGAGAGAAAACCGGTGGGATGCCAGTCTGTAGTGGTCCGGCGTTGTCCACCAGAGCGCACTCTTGCGTCGTTATTTTTCTCGGTCATGGCAACCGCGTTTTCATTGACTCATTCTCTGCATAGATCGCACCCAGAGCGAACAGAGACACGCCGAAAACAAGACGGGATTCATGAGGAATGAGTCGGTGCCTTTGGATTCATGACATCCCTCTAAAGGCTTTTCGCTGAGTGAGATCTACAGGAGAGCGTTGAATATTCGGGACTGATCGGATGTTCAGCTGACTGTGATTGCGGGAACATTGTGCGACCATCATCATGGCTGCGTCTGAATTATATACAAAGTATGCACGGGTCTGGATCCCGGATGTAGAGGAAGTGTGGAAGTCAGCAGAGCTCACCAAGGACTACAGACAAGGAGATGGAGTTCTGCAGCTACAGTTGGAGGATGGAAAGGAACTGGAATATAAATTGGACCCCAAGACAAACAACTTACCACACCTCCGTAACCCTGATATCCTGGTGGGAGAAAATGACCTGACAGCTCTCAGTTACCTTCACGAGCCCGCTGTGTTGCACAATCTGAAAGTGCGCTTCATTGATTCCAAACTCATCTACACATACTgcgGTATTGTTCTAGTCGCTATAAACCCATATGAGACGCTACCCATCTATGGAACTGACATCATCAATGCGTACAGTGGGCAGAATATGGGTGACATGGACCCTCATATCTTCGCAGTGGCAGAAGAAGCTTACAAACAGATGGCCAGGGATGAGAGGAATCAGTCTATCATTGTAAGTGGAGAATCCGGGGCAGGGAAAACTGTTTCAGCCAAATATGCCATGCGATACTTTGCTACAGTCAGTGGCTCCGCCAGCGAAGCCAATGTGGAAGAAAAAGTTCTGGCGTCCAACCCCATCATGGAGTCCATTGGTAATGCCAAGACCACCAGGAATGACAATAGCAGTCGTTTTGGGAAATACATTGAGATTGGCTTTGATAAGAAATATCACATCATCGGTGCAAACATGAGGACGTATCTCTTGGAGAAATCACGTGTCGTATTTCAGGCGGATGAGGAAAGGAATTATCATATCTTCTATCAGCTCTGTGCATCTGCTCACCTCCCGGAGTTCAAAGCCTTGAAACTGGGAAAGGCTCATGATTTTCACTACACCAAACAGGGCAGGAACCCAGTGATAGATGGAGTAGATGATGCCAAGGAGATGTCGACCACCAGAAACGCCTTCACACTGCTAGGTGTAAATGAGTCCTATCAGTTGGGCTTGTTTCAGATTCTGGCTTCAATTTTGCACCTGGGGAATGTGGAAGTGAAGGATAGAGACTCAGACAGCAGTATTATTCCTCCGAATAATGGTCACTTGAGTGTGTTTTGTGAATTGATGGGAGTGACATATCAAGACATGTCTCACTGGCTGTGCCATAAGAAGTTGAAGACAGCAACTGAGACATACATTAAGCCCATTCCCAAACTACAGGCCATAAACGCTCGCGATGCTCTTGCTAAACATATCTACGCCAAACTCTTCAACTGGATCGTGGACCATGTGAATAAAGCACTGCATTCTACTGTCAAACAGCACTCGTTCATCGGAGTCCTAGACATTTACGGgTTTGAGACTTTTGAAATCAACAGCTTTGAACAGTTCTGTATTAATTATGCCAATGAGAAACTACAGCAACAGTTCAACATGCATGTGTTTAAGTTGGAGCAAGAGGAGTATATGAAAGAGCAGATCCCCTGGACTCTCATTGATTTCTATGATAATCAGCCATGTATCAACCTCATCGAGGCCAAGATGGGCATCCTGGACCTGCTGGATGAGGAGTGCAAGaTGCCGAAGGGCTCTGATGACTCCTGGGCTCAGAAACTGTATAACACTCATTTGAAGACGTGTGCACTTTTTGAAAAACCACGGATGTCCAATAAAGCTTTCATTATTCAGCACTTTGCAGATAagGTGGAGTATCAGTGTGATGGTTTTCTGGAGAAGAATAAAGACACAGTCAATGAGGAGCAGATAAATGTTCTGAAGGCCAGTAAGTTTGACCTGCTGGTGGAGCTGTTCCAGGACGAGGAGAAAGCCACAAGTCCGACCGGTGCCGCTCCTGCTACTGGAGGACGCACTCGACTCAGCGTCAAACCAGAGAAGCATAAAGCCGGCCAAGCCAGCAAAGAACACAAGAAGACAGTTGGACTGCAGtTCCGTAACTCCCTGCAGCTGCTGATGGAGACCCTGAATGCGACTACACCACACTACGTTCGCTGCATCAAACCCAACGATTACAAATATGCCTTCACGTTTGACCCCAAGAGGGCAGTGCAGCAACTGCGTGCATGTGGTGTTTTGGAAACGATCCGCATCTCTGCAGCCGGTTTCCCATCCAGGTGGACGTATCAGGAGTTCTTTAGCAGGTATCGTGTCCTGATGAaacaaaaagatgttttgacAGACAAGAAGATGACCTGTAAGAATGTTCTGGAGAAACTGGTACAGGATCCAGATAAGTACCAGTTTGGCAAGACCAAGATCTTTTTCCGCGCCGGCCAGGTTGCGTATCTGGAGAAACTGCGTGCAGATAAGCTTCGTGCAGCCTGTATCCGCATCCAGAAGACCATCCGCTGCTGGCTGGCGCGCAAGAAGTACCTGCGCATGAAACATGCTGCCACAACCATCCAGAGATATGTCCGTGGATACCAGGCCCGCTGTCTTGCGAAATTCCTGCGTCGCACGCGTGCTGCGATCATCATTCAGAAGTACCAGCGCATGTATATCCAGAAAACGTGTTACAAACGCCAGCAGGCTGCCGCTCTGGCCATGCAGTGCATCCTCAGGGCATACATGGCCAGACAGCTGTACAAAGCGCTTCTGCGCGAGCATAAGGCCATCATCATTCAGAAGATGGTCCGAGGCTGGTTGACGCGGCAGTGGTACAAGCGGAGCCTCAAAGCCATCGTTTACCTTCAGTGCTGCATTCGCCGGATGCGAGCCAAGAGAGAACTCAAGAAACTCAAAATTGAAGCACGTTCGGTGGAACACTTTAAGAAACTCAACATCGGCATGGAGAACAAGATCATGCAACTGCAGCGCAGGATAGACGACCAGAACAAGGAGAACCGTGTTCTCAGCGAGCGTTTGAACAGTCTAGAGGTCAGCCACGCTGCGGAGTCCGAGCGTCTGCGCGTGGAATTGACGCGTCTGCGAGGGGCAGAGGAGGACGCCAAAAACAACGCCAACAAAGTTACATCTCTTCTGGAGGAGCTGGAGCGACTGCGCAAAGACCTGCAGAACACACAGAAGGAGAAGAAAGCCATCGAGGACTGGGCGCAAACCTACCAGGACGAGATGGAAAAGATGATCTCAGAGCTAAAGGAGCAAAACCACCTGCTGAAGAACGAGAAGAACGACCTGAACCGACTGATCCAAGAACAGAGCCAGCAGTGGACAGAAAAAATGCAGAGGGCTCTGAAAGAAGAAACCCAACAGTTAGAAAACGATTTAAACGAGGAACGGTCTCGCTACCAGAACCTTCTTACCGAGCACCTCCGACTAGAGGAGAAATACGACGATCTGAAGGAGGAGATCACACTTGCTGTAaatgtTCCAAAACCTGGTCACAGGCGCACAGACTCCACACACAGCAGCAACGAATCAGAATGTACCTACAATTCAGAGTTTGCCGAGTCCGAGGAAGGGACACGCGAGGGGAGGTGAGAGCAGAATGACGTTTCCAAGGGGATACTGGATATGTCCTTGTTCCTAAAGCTGCAGAAGAGAGTATCCGAGCTAGAGCAAGAAAAACAGTTACTGCAGAACGAACTCGATCGGAGAGAAGAGCAGTTTCAGCGGGCTAGAGCtaggGATGATGAGGAACATAAGAAAGCTCGAAGTGCTGAGCTGGAATATGAATCTCTcaagCGTCAGGAGTTGGAGTCGGAGAACAAGAAGCTCAAACATCATTTGAATGAGATGCGTCAGTCTCTGAGAGGCAGCGCTGAGGCCGGTTCCGCCGCTCCGGGTTCTCCTGCGTACACGGTTCTCCTGGATCAGCTGAACTCCTCCAACGAGGAGCTGGAAGTGCGGAAGGAGGAGGTGCTCATCCTGCGCTCTCAGCTCGTCAGTCAGAAAGAGGCCATGCAGCACAAGGATGAGAAGGAGACCATGACTGAGCCTTTGCCGTATATTGAGGACGTGCAGAAGCTGACTGATGCCAAGGAGATCTCCCAGGCATACATGGGTCTTAAAGACACCAACAGATCCCCATTCCCTGACTACCATAAGCTGAATGAGGATGGAGAACTGTGGCTGGTTTATGAAGGGTTAAAGGAAACTAACAGgTTGTTGGAGTCCCAGTTGCAGGCTCAGCGGCGGTCTCATGAGAACGAGGTGGAGGTTTTGCGTGGAGAACTGCAGAGCGTTAAAGAGGAGAACAACCGTCAGCAGCAGCTGTTAGCTCAGAACCTGCAGCTTCCTCCAGAGGCCCGGATCGAGGCCAGTCTACAGCACGAGATCACTCGCCTCACCAACGAGAACCTGGAGCTTCACGCTGATGATCCAAAGGAGTATAAAGCCTACAGAATCAGCATGTTACGCAGGATGGTTGATCTCATGGAGCAGCTGGAGAAACAGGACAAGACCGTCCGCAAACTGAAGAAACAGCTCAAAGTCTTTGCAAAGAAAATCAATGACCtggaagGCGGCCAGATCGACGTGTCTCCGGGACAGACGGCCGATGAGCCCGTTCATCCGGTCAACATTCCACGCAGGGAGAAAGATTTCCAGGGAATGCTGGAATACAAGAAAGAGGATGAACTCAAACTGGTTAAAAACCTCATACTTGaattaaagcCTCGCGGCGTAGCGGTGAATCTGATACCAGGTCTGCCGGCATACATCCTCTTCATGTGTCTCCGTCATGCCGACTACATTAACGATGACCAAAAAGTCCGATCTCTACTCACCTCCGTCATCAACAGCATCAAGAAGATCCTCAAGaaaaGAGGCGATGACTTTGAGACCGTTTCCTTCTGGTTGTCCAATACATGTCGTTTCCTGCACTGCCTAAAACAGTACAGTGGCGACGAGCAATTCATGAAGCATAACACTCCTAAACAGAACGATCACTGTCTATCCAACTTTGATCTGGCCGAGTACCGGCAGGTTCTCAGTGACCTGGCCATTCAGATCTACCAGCAGCTCATCAAGTGTATGGAGAACATCCTGCAGCCCATGATCGTTTCTGGCATGCTGGAACATGAAACCATCCAGGGCGTGTCCGGGGTGAAGCCCACGGGTCTCCGTAAGAGGACGTCCAGTATCGCTGATGAGGGGACGTACACGTTGGACTCCATCATCCGGCAGCTCAACACCTTCCACTCCATCATGTGTCAGCACGGAACCGATCCGGAGCTCATCAAACAGGTGGTCAAGCAGCAGTTCTACATCATCGGCGCCGTCACCCTCAACAACCTGCTGCTGCGTAAAGACATGTGCTCCTGGAGCAAGGGCATGCAGATCAGgtatAACGTGAGTCAGCTGGAGGAGTGGCTGAGAGATAAGAACCTCATGACATGCGGCGCTAAAGAGGCGCTGGAGCCGTTGATTCAGGCCGCACAACTACTGCAGGTCAAGAAGAAGACGGATGAGGATGCTGAGGCCATATGCTCCATGTGCAACAGCCTCTCTACAGCACAGATTGTGAAGGTGCTGAACTTGTATACACCTGTCAGCGCGTTTGAAGAGCGCGTGTCGGTGCTGTTCATAAGAACAATACAGACACGTTTACGCGATCGAAAGGAGTCGCCTCAGCTGCTGATGGACACCAAACTCATCTACCCCGTGACCTTCCCCTTTAACCCCTCCTCTGGCCCTGAAACCATTCAGATACCCGGCAGCCTCAATGTGGGCTTCCTCACCCGTGTGTAG

Function

symbol description
myo5aa Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in actin cytoskeleton; cytoplasm; and vesicle. Is expressed in central nervous system; dorsolateral placode; intestine; neural tube; and neuron neural crest derived. Human ortholog(s) of this gene implicated in Griscelli syndrome type 1. Orthologous to human MYO5A (myosin VA).
myo5a Enables small GTPase binding activity. Involved in post-Golgi vesicle-mediated transport and vesicle transport along actin filament. Located in several cellular components, including filopodium tip; melanosome; and ruffle. Colocalizes with several cellular components, including actin filament; endosome; and peroxisome. Implicated in Griscelli syndrome type 1.

NR:

description
PREDICTED: unconventional myosin-Va

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10357 MYO5; myosin V

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264877.1 True 6180 mRNA 0.49 44 9751257 9801571

Neighbor

gene id symbol gene type direction distance location
arpp19a arpp19a,LOC107704273,LOC107676482,LOC107712699,LOC107550627,LOC107588548,LOC108413875 coding upstream 1474 9744904 ~ 9749783 (+)
fam214a fam214a,LOC107676484,LOC107704272,LOC107550636,LOC107588549 coding upstream 11851 9709204 ~ 9739406 (+)
onecut1 onecut1,LOC107746960,LOC107676486,LOC107712763,LOC107704258 coding upstream 49111 9696223 ~ 9702146 (+)
iqcg iqcg coding upstream 187010 9555052 ~ 9564247 (+)
LOC122362732 spon1,LOC107728096,LOC107567810,LOC107554002,LOC107741890 coding upstream 742208 8999349 ~ 9009049 (+)
LOC122362557 NA coding downstream 346504 10148075 ~ 10160926 (+)
LOC122362596 NA coding downstream 389199 10190770 ~ 10193160 (+)
gnb5b gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270 coding downstream 395233 10196804 ~ 10209150 (+)
bcl2l10 bcl2l10,LOC107747612,LOC107700593,LOC107588535,LOC107704269 coding downstream 407782 10209353 ~ 10214486 (+)
tmod2 tmod2,tmod3,LOC107700589,LOC107746940,LOC107747615,LOC107704266,LOC107550632,LOC108440576,LOC108264495 coding downstream 495926 10297497 ~ 10320648 (+)
G125236 NA non-coding upstream 55574 9694203 ~ 9695683 (+)
G125194 hipk3,LOC107676485,LOC107588537,LOC107712724 non-coding upstream 239015 9419549 ~ 9512242 (+)
G125191 NA non-coding upstream 399359 9351635 ~ 9351898 (+)
G125067 NA non-coding upstream 1024493 8722507 ~ 8726764 (+)
G125065 NA non-coding upstream 1109810 8641229 ~ 8641447 (+)
G125240 NA non-coding downstream 1348 9802919 ~ 10037928 (+)
G125253 NA non-coding downstream 253241 10054812 ~ 10055057 (+)
G125254 NA non-coding downstream 256170 10057741 ~ 10062780 (+)
LOC122323099 NA non-coding downstream 332400 10133971 ~ 10135088 (+)
G125341 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding downstream 446569 10248140 ~ 10249308 (+)
G125192 NA other upstream 385769 9359436 ~ 9365488 (+)
LOC122362511 cmc2,LOC107711752 other upstream 1203534 8544699 ~ 8547723 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other upstream 1214309 8176353 ~ 8536948 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other upstream 1219185 8168865 ~ 8532072 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other downstream 614442 10416013 ~ 10425840 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other downstream 830906 10632477 ~ 10718085 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other downstream 1023403 10824974 ~ 10837276 (+)
G125496 snrpd2,LOC106612977 other downstream 1166514 10968085 ~ 10969767 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other downstream 1424542 11226113 ~ 11233814 (+)

Expression


Co-expression Network