zgc:77752 (zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252)


Basic Information

Item Value
gene id zgc:77752
gene name zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20648300 ~ 20653670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264894.1
TCCTCCATGACGCCTCAGGTTCCAGTGCCCAGACCGTCATATTCTCAGGCCAGGGAGAGTCTGGTGAAGGCCATTCCTTCTAAGATCATCTGTCTTTTTGCCTGTGGGGGAAAAGACTGTCGATATGAAGGTCCGGCGTGCTGGAGCATAAGCCAACAGGCTATTAAAGGAGTCTTCTCCAGCTGgGTGACCGATGACATTATTGCAATGGCACGACCTTCTACGTGCCTCATCAAGAGATACTGCATCATAGAGCAGTTTAAACAGTTCAACATTAAATCCATCATTAATATGCAGCTCCCTGGGGAACATGCTCACTGCGGCCCTCCTCTGGACCCTGGCAGTGGGTTCACATACTCACCGCAGGTCTTTATGGACAGTCAAATTTACTTCTATAATTTTGGGATGTCTGATTTCGGAGTGTCGTCTCTGGAGGGGATGCTGGATGCCGTAAAGGTTTTGGCCTTTGCTGTGCAGGAAGGAAAGGTGGCCGTTCACTGCCACGCGGGACTGGGCAGGACAGGTGTTCTTATCGCATGCTATCTGGTCTACACCTGTCGAATCAGCGCCAGTGAAGCAGTCCACTACGTTCGAATCAGGAGGCCTCGCTCCATCCAGACTCGCTCACAGATCAATCTGGTGTTTGATTTCGCCCGGCTGCTGGGCTCTCAGCTGGCCCAGTACCCGTGTCTGAACATGCGGCACGGTTCCTCCTTCACTCTCCGGCAGTACCTCCTGCGTCAGGGCATTCTGCTGCACGGGGACGAGGCCCGAATCCTCAAACACACGCCCAAGATCCTGCACGTCCTCTGCAGCATGCTGGTCGCTCTCGCTCAGGGGGCTCCCGGTCCCCCAGAGGTGCAGAGGGAACTGGAGAAGAGGCTGAACGTCTTGGCCCTGAAGAAGACAGTGAAGGTGACGCTTCTGAAGAGAAACCTGCCTGCCCTGAAGGAACGGAGAGGCTCGTGCAGAGCGTACTCCTGTGAGTCCTGGGACGAGCCGTTCGGGTTCctggagaggaagagagacgtCCTTCTAAACAAGAGAAGCTACAGCGACTCGGATCTCAGCAAGATTACTATTATTGAGGATTTTATGTTCTCACGCTACTCTCCTCAATCTGGTGGACATCATAAAATGAGCAATGGAGAAACTGGCCCATCAACAGATCAGAGAGTCCCAAGAGAATCCCAAAAGAGTCCTCAAACCCCGATGACAGACCAGAACGAGACGACAGAGAAACACAGCCCCAATCCACCATCAGCTCCTCACCCTCAAAATGAGACCGTGAACAAGAAGACAAAATGTACAACCAAGAAACCTCAGGTTTACCTAAAGTTCAGCTCAAACATCGAGCTAAGGCTGGAGCATCGTGCATCATCAGTTGAGTCGTCGTTATCAAGAGCTGTCGCTAAAGCAATGGCTCAACAGCGCCCTCCGCTGGACACTGTGTTGAAAAAAGCAGCGGTTTTGCAGGATGAGCTCAACTTGAGTGAATGTGGCTGGGCTACACTCGTCTTGGAAACAGATCCAGATGTTCTGAGCACGCTGTTATGGATCTGGCTGGACAAActaaagGATCCCGTTCTCAGTAGAGATGACACAGAGAGGCTGACCTCAACCTGGCCTGCACAAAACCTGCACAACTATCAGCGTCACACCATCTGCTGTTTGCTGGACTGTGTGGGTCAAGCGGCAGTTCGATGTCCTCAGTTCGAACACGCTATGCTGCTGAGGCTCATTCGAGCTTTGACAAGACGCCCTCCAGAGGAAATAGAGAGAAACAACATCTTGTTACAGGTCCTGAGAGCTACGATGAGAGAGCAGTACCTGCACAACCACTACCTGAACACTACAACAACACCACAGTGTTAGGAGCAGTGCTTAAACTCATAAAACCA

Function

symbol description
zgc:77752 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Is expressed in retina and retinal photoreceptor layer. Orthologous to human PTPDC1 (protein tyrosine phosphatase domain containing 1).

NR:

description
protein tyrosine phosphatase domain-containing protein 1-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264894.1 True 1901 mRNA 0.52 11 20648300 20653670

Neighbor

gene id symbol gene type direction distance location
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding upstream 14664 20629743 ~ 20633636 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding upstream 30120 20609937 ~ 20618180 (+)
syt1b syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864 coding upstream 82994 20561835 ~ 20565306 (+)
cers3b cers3b,LOC107559674,LOC107733272,LOC107662883,LOC107686553,LOC103029792 coding upstream 109682 20532906 ~ 20538618 (+)
LOC122323072 LOC107559655,LOC107686551,LOC107733270,LOC107662882,LOC107736185,LOC563500,LOC107600544 coding upstream 116721 20506031 ~ 20531579 (+)
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding downstream 862 20654532 ~ 20657823 (+)
rabl2 rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941 coding downstream 13083 20666753 ~ 20671837 (+)
arsa arsa,LOC107710387,LOC107599918,LOC107560065 coding downstream 274845 20928515 ~ 20933433 (+)
chkb chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153 coding downstream 309458 20963128 ~ 20969701 (+)
LOC122362691 LOC107719968,LOC107671151,LOC101886608 coding downstream 316422 20970092 ~ 20972842 (+)
LOC122363025 NA non-coding upstream 592 20641765 ~ 20647708 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding upstream 59437 20586051 ~ 20588863 (+)
G127860 NA non-coding upstream 75990 20562083 ~ 20572310 (+)
G127785 NA non-coding upstream 264542 20325330 ~ 20383758 (+)
G127800 NA non-coding upstream 272465 20373854 ~ 20375835 (+)
LOC122362840 NA non-coding downstream 216205 20869875 ~ 20887115 (+)
G127935 NA non-coding downstream 241107 20894777 ~ 20937442 (+)
G128148 NA non-coding downstream 427099 21080769 ~ 21081291 (+)
G128149 NA non-coding downstream 474883 21128553 ~ 21129033 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding downstream 508216 21161886 ~ 21162751 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 7241 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 47781 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 91673 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 98943 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 554699 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1747274 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1781136 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2803430 23457100 ~ 23736848 (+)
G128858 NA other downstream 3796095 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3930175 24583845 ~ 24588337 (+)

Expression


Co-expression Network