shkbp1 (shkbp1,LOC107692479,LOC107724139,LOC107656962)


Basic Information

Item Value
gene id shkbp1
gene name shkbp1,LOC107692479,LOC107724139,LOC107656962
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 14911044 ~ 14921023 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264968.1
GAAATATTCCGTGACAACATCCGCCCCTCCGCCGCTTCCTGACTACGGCTAGTACAATCAAGCGGCGTTTTATTATGAAGTTAATATCAACGCCTGCTTAAAAAGACGACAGACTATGAATGATTTACCTTAAAAGCGAAAACCATGGCGAGGATCGGCGACATCATTCATCTTAACGTCGGGGGGAAGAGGTTCAGTACCTCCAGACAGACTCTGACATGGGTTCCTGACTCGTTTTTCTCCAGtTTATTAAGTGGACGGATATCAACACTTAAAGATGAGACCGGAGCGATATTCATCGACAGAGATCCGTCTCTGTTTGCTCCCATTCTCAACTTTCTGCGCACTAAAGAGCTCCACCCCAGGTCCATAGACGTGCACTTACTAATGCACGAGGCAGAGTTCTACGGGATCACGCCGCTGGTGAGGAAGCTGCAGCTGTGTGATGAGCTGGACCGCTCCTCCTGCGGGAACGTGCTGTTCAACGGATACCTGCCTCCTCCGGTGTATCCGGTGAAGCGCAGAAACAGGCACAGTGTGGCAGGACCCCAGTTCATGGGGGGCCGCGCGGGGCCCGTGGAAAGGGCCCCTGTGAGGAGGAGCAACACAATGCCTCCTAACCTGGGCAACTCTGGCATTCTGGGTAAAGCCGTCATAGAGGAGAGAGTCCCAGGTCCGGTCTCTGATCCAGGCATGGTCCGAATCATATGTGGTCATCATAACTGGATAGCTGTGGCTTATGCCCAGTTTGTGGTGTGTTACAGGGTGAAGGAGTCGACTGGATGGCAGCAGGTGTTCACCAGCCCTCGGCTGGACTGGGTGATTGACCGAGTCGCTCTCAATGCCAAAGTCATGGGCGGTTCTCTAGGGGACAATGATAAGATGGTGGCCGTTGCATCGGGCACAGAGATCATACTGTGGGCCATCTGTCCCGATGGAAATGGCAGTGAAATCGGCGTGTTCAGTTTGAACGTGCCGGTGGAGGCTTTGTTCTTCGTTGGAAATCAGCTCATCGCCACCAGCCACACGGGAAAAGTGGGAGTGTGGAACGCTGTCACGAAACACTGGCAGAACCAGGATGTGGTTCCTATCAATAGTTACGACACAGCCGGATCTTTCCTCATTTTGGGATGCAACAATGGATCTATTTACTATATCGATGTCCAGAAGTTTCCGTTGCGGATGAAGGATAACGATCTGTTGGTGACTGAGCTGTATCGAGATCCCAGCGAAGATGCTATCACTGCTCTGAGCGTCTACCTGACGCCCAAAACAAgTGACAGTGGGAACTGGATCGAGATTGCGTACGGCACTAGTTCAGGAACGGTGCGTGTCATAGTGCAGCATCCGGAGACCGTGGGGTCCGGTCCACAGCTCTTCCAGACCTTCTCCGTTCACCGCAGCCCTGTGACCAAGATCATGCTGTCTGAGAAACATCTCATCTCTGTGTGCGCAGACAACAACCACGTCCGCACCTGGACGGTGACCCGCTTCCGAGGCATGATCTCCACTCAGCCCGGCTCCACGCCCCTCACGTCCTTTAAGATCCTCTCACTGGACGATATCGACGGCCACGGAGGCTGCGCTGCTGGCACCGAAATAGGGCCGTACGGAGAGCGTGACGAGCAGCAGGTGTTCATCCAGCGCGTGGTTCCCGACACCGATAAACTCTACGTAAGGCTCTCCTCCAACGGAAAGAGGGTGTGTGAGCTGCGTTCGGTGGACGGGACGTCAATCACGGCGTTTGTGGTGCACGAGTGTGAGGGGTCCAGCCGCATCGGATCCAGGCCCCGCCGGTACCTCTTCAGTGGACACGGCAACGGCAGCATCCAGATGTGGGACCTCACCACGGCGATGGAGATCGCAGGGAAAGTGGATATCAAAGCTCTGGGCGGTCCCACTGAAGAGGAGTTACTGGAGCTTTTAGACCAGTGTGATCTGGCACTGACCCGGACACCAGACATGAGTCCTGCAGCCTCCCTCACACACTCCTCACGCACCTCCATgtgcagCCTTCAGTCTCAGTTCAGTGAAATGAGTCGAGCTGCCGTTGGTTTCCGGGGTCCGGTTCCTCTGACCGGCAGTCTGCCCCGTCAGGCCCCGCTGGTTCCCCTCAGCAAACCGCCGCACCTCGGCCTCAGCCAGTCGTCTCTGGCCAGCAGCGACGGCCTGGGCTCCATCCGCAGGGGCAGCTTCGTGGAGCGCTGTCAGGAGAGAGCTAAGAGCTCGGACGCGGCCGGCCTGGACGGGGGCAGACGCAGCTTAGCCGTGTGCAACGAGCTGGAAGCCCGACTCGGCCTGAGAGCGCAGCCGCCGTTCTCCACACCTCCGTCCTCGTCCTCGGCGGCGGCCATGAGGAGACCGGCTTCGGCAGCACCGAGTCCTGCTCCTTCACCCCTCAGTCCAGCCAGGTCACAGACGCCCTCGTCTCCGAGGCGACCCCTGACCTCTCCCACCGGCGAGAGCCCATCCAATGAGAGCGCACCCGGGCAAGAAAGCCCCGCCTCTGCATCGTCCACCAGCCCCAAACCTCACATGAATGAAACCAGCTTCTGAGAGGAAAGtagacacagaaaaaaaaaaaaatcgaattttTTACCCGGCGACAGAAATGCAGAATTGAAAAGTGTTACACACAAGTAACTATATGCGTACTTCTTTTAGAGCAGTATTCTTAATATCAGAACATGCGCGCACACAATTATAAATCGTTCATTTCTGAGAATAAGATTGTATCAGTTCTGAGCATAATTTATGTATGATGTTATTCGCGAAAACGGCATGATTTCGCATTCTGAATCATGCCGAAACGTCGTAGCATTTACAAAACGTTTCTTTTAGAACAGTGTCCTCGGTATCACAGGGTGCCTTATAATACAGCGTCAAGACGTTATGAAAGTATGCAGatgagagggggaaaaaatcccTTTCAACGaggcttcaaaaaaaaaacgttgcgGAAAAAAGTACTTTTCGTTGGTACGTTTGTGGCAGATTTATCACgtagggggaaaaaatgacTGGCATGTTAAAATACTTCCCAAACTTATGCAACTAAACGTCACTGGAAAGTCAAAACACTGGCTCTGATGCTGTTCGAACTGGGATGGGGCCGGGGCTGCGCGTTCAGCCAGCCAATGACAGGATAGGGGCGTGTCTCGCGCCGTCTTCTCGAGGCTGTGCTGTTTAGGGGCTGATACCGCTGCACCGACAGGCTTACAATCACTAGACTActgtatttattacagtataacGGTAGCAACTAAACCTATGcttgttttacagaaaatgcGCATTATAAATGAATAGGACCACTGCATATATTATGacaatgatattaaaaatatatatcgcTGTAAAGAAAACTTTATGTGTGTACTAAGCGGTTTACAGGTGGTTCTtctagaacaaaaataaatgagcatgtaaaaaaacaacaaaaaaacccgaTGTATGATATGAAGAGGAAGCCGGTGTCTGTAATGCTGGCAACACACTGTATATTTAATCAGCAAACGTTCCACACAGTTTGCAGTAAAACACACACGAGCACAGACTGAAGCTCAGCTGCCGCTTTCCGTTACGCCTCGGAGGACTGTTGTGTGTAAATGCTGTCGGGGACCGGTGTGCCTTTGAGATGGTAAACACGGGCTGTTACTACAGCGCAAACAACAAGTGTGTCTGAATGTTCACTCTACTCATATCATCTCTGTTCAGTATTTTATCTCGTTTATGACAAGCTTGAAGGTTTGGtggtttttttacattaacggtgtcattcataaataaatctgaaactCTCTTTTTCCATA
>XM_043264969.1
AGACGACAGACTATGAATGATTTACCTTAAAAGCGAAAACCATGGCGAGGATCGGCGACATCATTCATCTTAACGTCGGGGGGAAGAGGTTCAGTACCTCCAGACAGACTCTGACATGGGTTCCTGACTCGTTTTTCTCCAGtTTATTAAGTGGACGGATATCAACACTTAAAGATGAGACCGGAGCGATATTCATCGACAGAGATCCGTCTCTGTTTGCTCCCATTCTCAACTTTCTGCGCACTAAAGAGCTCCACCCCAGTGAGGAAGCTGCAGCTGTGTGATGAGCTGGACCGCTCCTCCTGCGGGAACGTGCTGTTCAACGGATACCTGCCTCCTCCGGTGTATCCGGTGAAGCGCAGAAACAGGCACAGTGTGGCAGGACCCCAGTTCATGGGGGGCCGCGCGGGGCCCGTGGAAAGGGCCCCTGTGAGGAGGAGCAACACAATGCCTCCTAACCTGGGCAACTCTGGCATTCTGGGTAAAGCCGTCATAGAGGAGAGAGTCCCAGGTCCGGTCTCTGATCCAGGCATGGTCCGAATCATATGTGGTCATCATAACTGGATAGCTGTGGCTTATGCCCAGTTTGTGGTGTGTTACAGGGTGAAGGAGTCGACTGGATGGCAGCAGGTGTTCACCAGCCCTCGGCTGGACTGGGTGATTGACCGAGTCGCTCTCAATGCCAAAGTCATGGGCGGTTCTCTAGGGGACAATGATAAGATGGTGGCCGTTGCATCGGGCACAGAGATCATACTGTGGGCCATCTGTCCCGATGGAAATGGCAGTGAAATCGGCGTGTTCAGTTTGAACGTGCCGGTGGAGGCTTTGTTCTTCGTTGGAAATCAGCTCATCGCCACCAGCCACACGGGAAAAGTGGGAGTGTGGAACGCTGTCACGAAACACTGGCAGAACCAGGATGTGGTTCCTATCAATAGTTACGACACAGCCGGATCTTTCCTCATTTTGGGATGCAACAATGGATCTATTTACTATATCGATGTCCAGAAGTTTCCGTTGCGGATGAAGGATAACGATCTGTTGGTGACTGAGCTGTATCGAGATCCCAGCGAAGATGCTATCACTGCTCTGAGCGTCTACCTGACGCCCAAAACAAgTGACAGTGGGAACTGGATCGAGATTGCGTACGGCACTAGTTCAGGAACGGTGCGTGTCATAGTGCAGCATCCGGAGACCGTGGGGTCCGGTCCACAGCTCTTCCAGACCTTCTCCGTTCACCGCAGCCCTGTGACCAAGATCATGCTGTCTGAGAAACATCTCATCTCTGTGTGCGCAGACAACAACCACGTCCGCACCTGGACGGTGACCCGCTTCCGAGGCATGATCTCCACTCAGCCCGGCTCCACGCCCCTCACGTCCTTTAAGATCCTCTCACTGGACGATATCGACGGCCACGGAGGCTGCGCTGCTGGCACCGAAATAGGGCCGTACGGAGAGCGTGACGAGCAGCAGGTGTTCATCCAGCGCGTGGTTCCCGACACCGATAAACTCTACGTAAGGCTCTCCTCCAACGGAAAGAGGGTGTGTGAGCTGCGTTCGGTGGACGGGACGTCAATCACGGCGTTTGTGGTGCACGAGTGTGAGGGGTCCAGCCGCATCGGATCCAGGCCCCGCCGGTACCTCTTCAGTGGACACGGCAACGGCAGCATCCAGATGTGGGACCTCACCACGGCGATGGAGATCGCAGGGAAAGTGGATATCAAAGCTCTGGGCGGTCCCACTGAAGAGGAGTTACTGGAGCTTTTAGACCAGTGTGATCTGGCACTGACCCGGACACCAGACATGAGTCCTGCAGCCTCCCTCACACACTCCTCACGCACCTCCATgtgcagCCTTCAGTCTCAGTTCAGTGAAATGAGTCGAGCTGCCGTTGGTTTCCGGGGTCCGGTTCCTCTGACCGGCAGTCTGCCCCGTCAGGCCCCGCTGGTTCCCCTCAGCAAACCGCCGCACCTCGGCCTCAGCCAGTCGTCTCTGGCCAGCAGCGACGGCCTGGGCTCCATCCGCAGGGGCAGCTTCGTGGAGCGCTGTCAGGAGAGAGCTAAGAGCTCGGACGCGGCCGGCCTGGACGGGGGCAGACGCAGCTTAGCCGTGTGCAACGAGCTGGAAGCCCGACTCGGCCTGAGAGCGCAGCCGCCGTTCTCCACACCTCCGTCCTCGTCCTCGGCGGCGGCCATGAGGAGACCGGCTTCGGCAGCACCGAGTCCTGCTCCTTCACCCCTCAGTCCAGCCAGGTCACAGACGCCCTCGTCTCCGAGGCGACCCCTGACCTCTCCCACCGGCGAGAGCCCATCCAATGAGAGCGCACCCGGGCAAGAAAGCCCCGCCTCTGCATCGTCCACCAGCCCCAAACCTCACATGAATGAAACCAGCTTCTGAGAGGAAAGtagacacagaaaaaaaaaaaaatcgaattttTTACCCGGCGACAGAAATGCAGAATTGAAAAGTGTTACACACAAGTAACTATATGCGTACTTCTTTTAGAGCAGTATTCTTAATATCAGAACATGCGCGCACACAATTATAAATCGTTCATTTCTGAGAATAAGATTGTATCAGTTCTGAGCATAATTTATGTATGATGTTATTCGCGAAAACGGCATGATTTCGCATTCTGAATCATGCCGAAACGTCGTAGCATTTACAAAACGTTTCTTTTAGAACAGTGTCCTCGGTATCACAGGGTGCCTTATAATACAGCGTCAAGACGTTATGAAAGTATGCAGatgagagggggaaaaaatcccTTTCAACGaggcttcaaaaaaaaaacgttgcgGAAAAAAGTACTTTTCGTTGGTACGTTTGTGGCAGATTTATCACgtagggggaaaaaatgacTGGCATGTTAAAATACTTCCCAAACTTATGCAACTAAACGTCACTGGAAAGTCAAAACACTGGCTCTGATGCTGTTCGAACTGGGATGGGGCCGGGGCTGCGCGTTCAGCCAGCCAATGACAGGATAGGGGCGTGTCTCGCGCCGTCTTCTCGAGGCTGTGCTGTTTAGGGGCTGATACCGCTGCACCGACAGGCTTACAATCACTAGACTActgtatttattacagtataacGGTAGCAACTAAACCTATGcttgttttacagaaaatgcGCATTATAAATGAATAGGACCACTGCATATATTATGacaatgatattaaaaatatatatcgcTGTAAAGAAAACTTTATGTGTGTACTAAGCGGTTTACAGGTGGTTCTtctagaacaaaaataaatgagcatgtaaaaaaacaacaaaaaaacccgaTGTATGATATGAAGAGGAAGCCGGTGTCTGTAATGCTGGCAACACACTGTATATTTAATCAGCAAACGTTCCACACAGTTTGCAGTAAAACACACACGAGCACAGACTGAAGCTCAGCTGCCGCTTTCCGTTACGCCTCGGAGGACTGTTGTGTGTAAATGCTGTCGGGGACCGGTGTGCCTTTGAGATGGTAAACACGGGCTGTTACTACAGCGCAAACAACAAGTGTGTCTGAATGTTCACTCTACTCATATCATCTCTGTTCAGTATTTTATCTCGTTTATGACAAGCTTGAAGGTTTGGtggtttttttacattaacggtgtcattcataaataaatctgaaactCTCTTTTTCCATA

Function

symbol description
shkbp1 Orthologous to human SHKBP1 (SH3KBP1 binding protein 1).

NR:

description
SH3KBP1-binding protein 1 isoform X2

GO: NA

KEGG:

id description
K21953 SHKBP1; SH3KBP1-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264968.1 True 3812 mRNA 0.52 18 14911044 14921023
XM_043264969.1 False 3650 mRNA 0.52 17 14911147 14921023

Neighbor

gene id symbol gene type direction distance location
ppp1r37 ppp1r37,LOC107692481,LOC107566290,LOC107709550 coding upstream 9637 14871768 ~ 14901407 (+)
bmp16 LOC107566293,LOC107692530,LOC107709563,LOC107577119,LOC107725066 coding upstream 60668 14843211 ~ 14850376 (+)
kcnj5 kcnj5,LOC107725067,LOC107558569,LOC107709561 coding upstream 135651 14752182 ~ 14775393 (+)
fli1 fli1,LOC107692484,LOC107656981 coding upstream 183157 14704160 ~ 14727887 (+)
smtla LOC107709547,LOC107590731,LOC107692520,LOC107656966 coding upstream 327790 14578170 ~ 14583254 (+)
si:ch211-136a13.1 LOC107727474,LOC107566284,LOC107692514,LOC107722278,LOC108264834,LOC108435511,LOC106580732 coding downstream 131021 15052044 ~ 15064838 (+)
yif1b yif1b,LOC107566288,LOC107564401 coding downstream 145839 15066862 ~ 15072223 (+)
dusp8b LOC107713871,LOC107692476,LOC107569904,LOC107599770 coding downstream 511933 15432956 ~ 15442131 (+)
mob2b mob2,mob2b,LOC107722284,LOC107656971,LOC108430083,LOC108264656 coding downstream 528318 15449341 ~ 15482697 (+)
scamp5b scamp5b,LOC107740350,LOC107722282,LOC107599784,LOC108430449 coding downstream 590512 15511535 ~ 15518917 (+)
LOC122323060 NA non-coding upstream 167600 14740786 ~ 14743444 (+)
G126285 NA non-coding upstream 440029 14470760 ~ 14471015 (+)
G126262 NA non-coding upstream 468541 14375565 ~ 14442503 (+)
G126251 NA non-coding upstream 790194 14120193 ~ 14120850 (+)
G126243 NA non-coding upstream 842173 14068604 ~ 14068871 (+)
G126347 NA non-coding downstream 11298 14932321 ~ 14984748 (+)
G126345 ltbp4,LOC107724163,LOC107566282,LOC107692515 non-coding downstream 15902 14936925 ~ 14937634 (+)
G126458 NA non-coding downstream 145323 15066346 ~ 15066577 (+)
G126591 NA non-coding downstream 839940 15760963 ~ 15820330 (+)
G126605 NA non-coding downstream 904404 15825427 ~ 15828353 (+)
LOC122322993 LOC107709552 other upstream 887 14906616 ~ 14910157 (+)
gemin7 NA other upstream 82752 14826788 ~ 14828292 (+)
G126146 gramd1bb other upstream 969675 13940095 ~ 13941369 (+)
G126175 NA other upstream 998244 13909564 ~ 13912800 (+)
lbhl lbhl other upstream 1041712 13861871 ~ 13869332 (+)
LOC122362588 NA other downstream 114360 15035383 ~ 15047893 (+)
LOC122362954 LOC107740354 other downstream 1029959 15950982 ~ 15953653 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other downstream 1126046 16047069 ~ 16055627 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other downstream 1342816 16263839 ~ 16271267 (+)
G126820 NA other downstream 1832686 16753709 ~ 16818399 (+)

Expression


Co-expression Network