chkb (chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153)


Basic Information

Item Value
gene id chkb
gene name chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20963128 ~ 20969701 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265030.1
ATCTTCTTAAGTCGGTCTGCGGCGACAACGCAAGCGGTTACTTCACGAGGAAGTAATAGAAGTTGAAGTGGGAAGATGTTTAATTAACCTTTACAGTTTGTAAAATTTAATGTAACAGTTAAGCAAAGGTCATGTGGAAAGAATAGCTAGTCATATCTTTAATCCAgctgtcttttctctctccgtAAACGGTGTTCTGTCATCGCGAGCGATTATACCATTGTGCGCGCGTGATAGTGGTGCATTTGCGTTTATTCACGTTTAATTGGCGCTGCTTCTGAGCGCATAGGCGTGCTTACTTGTAGCGGTTGAGttattttactctttttaaGGAGAACTGGTTTTCTAGCGCGTAAGATCAGATCATGAATTCCGGCCAAACGGTGAAGTGCATGAGTGATGGAGCTGGAAGTGCAGGCAGATGCGTGGATGATGACGCGGATTCAGACAGACCTGCTGGCGGAGACTCGCTGATGGCGGCCGAGGAGAGACATGCGAGATCCGCCAGTCCCCGCGGTGTGAACGGAGACGATGACTCTGAAGCGGAGTCCCATCAGGACGGCCGGAACGTGGATGTGGACCGGGAGACCAGGAGGAGGGCGTTCAGCTGGTGCCGCGACTTTCTATCCGGATCATGGAAGGCTATATCGGAGCATGACTTTCAGATCAAAATAGTCAGCGGAGGACTCAGTAACCTGCTGTACATGTGCAGTTTACCCGACGACGTTCAGCCCACCGGGGTCGAACCTCGACGAGTTCTGCTCCGGATCTACGGGGCCATTCTACAGGGAGTGGATTCTCTTGTTTTGGAAAGTGTGATGTTTGCCATTTTAGCAGAGAGAGAGTTGGGCCCACATCTCTATGGCATTTTCCCAGAAGGGCGTCTAGAGCAGTACTTGCCTAGTGATCGCTATGCACGTCTGGAGCAGTTAGGGTTCCCAGAGATCTCAGCTGAAATAGCCAGTAAAGTGGCACGATTCCATGGGATGGAGATGCCATTCAACAAGGAACCCAAATGGCTGTTTGGAACCATTGACCGGTATATGGAACAAGTCAAAACGATTAAATTTGTGCGCGAAGCACACATAAAGAAATTTAACAAGCTATTGAAGTATGATCTTCCTGCAGAACTGGAGAATCTGAGGTCACTGCTGGCAGCTACTCCCTCTCCAGTTGTGTTCTGCCATAATGACGTACAGGAAGGCAATATCCTCCTGCTGGATGGACGAGAGAATTCATCTGACAAACTAATGCTTATTGATTTTGAATACAGCAGCTATAACTACAGAGGCTTTGATTTTGGAAATCATTTCTGTGAATGGATATATGACTACACATATGACCAGTGGCCCTTTTACAAGGCAAAGGTGGAGAACTATCCCAACAGACAACAGCAGttacattttatcAGACACTATCTGTCAGAAAAGGGGGGCATTGCACCTGCAGACCAAGCCAGGATAGAAGAGGACATTATCATTGAGGCAAACCGgttTGCCCTTGCTTCTCATTTCCTCTGGGGCTTGTGGTCCATTATTCAAGCCAAGATCTCCAAAATCGAGTTTGGATATatgGACTATGCACAGCACAGGTTTGACACATACTTCAAACAGAAGAGGCTTTTTTCCTAAATTGTGCTTGAGGATATCATTTTACATCACCTATTGTTTCgatattgatttaaaaagaacattcaaGAAAGGGCACAGTACAAAACAATTAAGAATGCTGAAGAATGGTTCATCCTGGGGAACATTAATTTTAGGTAATGAAACATCCAAAGATACCCTGCCTTAAAGTCACATTTTGTTGGGCTTTATAGTTGTTCTTGTCCCTACCAAAAACTTAGAAGGTGAAAAGTTGCAAAAAATCTGCAACTGTTAGGATAGTATTTTGTGACCTAGATACATTTCATGTACTGTTCGTACCTCTTGATTGTACAAAACGAACTgtcagtttatttataataatgtaactgcattatttaatgtgtttactTTTTATCTAACTTGCGTGTGGTCAACATTATCTATTAATTCTATTAAgaatcaatccatccatcataaTTACTGTGTAAACCACAGGGTCCAGTTATGTCTATAAATTgaatttcttttgtattttcatctgaaaacaaaagctgtttaactgtttaattttCCTCCCCAGAGTTTTAAACATTGCAAAATGATTGCATCCTGCCTATATTTACATACTGTGAAAAACATTGCACGTCTTCTTTAAACTCAGGAGTCAATTAGTTGAATGGCACATAAACTACTCtttctttatgattttaatGGCATTTGACCTTCAGTtggaaaaattattaataatcgCAAATAATGTCTTGAGCTATGTATGCTGTGTTTTACTTGGGATTTGACCAGTCTCTGCTCTGCCATATTTATATGTAGCAATAACTATTGTCTACACCATAAGCTGTCTTGTATGCATTTGTATATAGGTTTGAATATGGTCTGTACTGAACATAAAAGAAACGCAACCTCAAGAACAGAATTTTAATTACTATACTGTCAAATGCCTTTGTCCCAAcataaattgattttatgtACCTGCTGAtttggttttctgttttaattgttttatgttaatttatattttttatttgtctaaagCAAGTATACTGTGTTTTGTTCAACCAAATGGTAAAAGCTTCTCTGAATGAttcctgaagaaaaacaatacaaatgaaGGAAAGTAGCGTTATACAGTGAATCAGTGGGATCATCTTACGAATCATGGTACATTTTTGGAATCATTTTGGGGGATTCTGAATGGCCAAATCGATGCTCCTGTATTTGTCCCGAATCATTTTCACAATGCTTTCTTTATCGTATGTTGTAAgttaagaaacaaaagaaacattgGGGGACCATGAACATTTTAGGCTGGGCCACTTTAACATGCTCCCAACATCATTGTTGGTATTGaatctgtgatttttaaatattgagttGAGAAGCAATGGCACTGTTAAAACCAATGTTAACTTCTATAATTGCTTTGGCTTATTTAAGTTATACTGTAAACTTGTCCCTGGTATGTTTCCTTTTACTCATTTGCTGTGCAGGTATCCATTAAttttgctcattaaaaaaaatcatgctga

Function

symbol description
chkb Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Human ortholog(s) of this gene implicated in intellectual disability; megaconial type congenital muscular dystrophy; muscular dystrophy; narcolepsy; and recurrent hypersomnia. Orthologous to human CHKB (choline kinase beta).

NR:

description
choline/ethanolamine kinase

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K14156 CHK; choline/ethanolamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265030.1 True 3133 mRNA 0.40 11 20963128 20969701

Neighbor

gene id symbol gene type direction distance location
arsa arsa,LOC107710387,LOC107599918,LOC107560065 coding upstream 29695 20928515 ~ 20933433 (+)
rabl2 rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941 coding upstream 291291 20666753 ~ 20671837 (+)
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding upstream 305305 20654532 ~ 20657823 (+)
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding upstream 309458 20648300 ~ 20653670 (+)
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding upstream 329492 20629743 ~ 20633636 (+)
LOC122362691 LOC107719968,LOC107671151,LOC101886608 coding downstream 391 20970092 ~ 20972842 (+)
cpt1b cpt1b,LOC107686536,LOC107599889,LOC107671150,LOC107710383,LOC107559523 coding downstream 3814 20973515 ~ 20980699 (+)
impdh1a impdh1a,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC107671158,LOC108442450 coding downstream 167105 21136806 ~ 21154598 (+)
si:dkey-5i3.5 LOC107710366,LOC107671161,LOC107559433,LOC107665548,LOC107599782 coding downstream 197814 21167515 ~ 21174321 (+)
tmem243a tmem243a,LOC107560025,LOC107665549,LOC107710379 coding downstream 204890 21174591 ~ 21176792 (+)
G127935 NA non-coding upstream 25686 20894777 ~ 20937442 (+)
LOC122362840 NA non-coding upstream 76013 20869875 ~ 20887115 (+)
LOC122363025 NA non-coding upstream 315420 20641765 ~ 20647708 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding upstream 374265 20586051 ~ 20588863 (+)
G127860 NA non-coding upstream 390818 20562083 ~ 20572310 (+)
G128148 NA non-coding downstream 111068 21080769 ~ 21081291 (+)
G128149 NA non-coding downstream 158852 21128553 ~ 21129033 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding downstream 192185 21161886 ~ 21162751 (+)
G128158 NA non-coding downstream 195571 21165272 ~ 21166073 (+)
G128216 NA non-coding downstream 497077 21466778 ~ 21468553 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 322069 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 362609 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 406501 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 413771 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 869527 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1431243 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1465105 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2487399 23457100 ~ 23736848 (+)
G128858 NA other downstream 3480064 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3614144 24583845 ~ 24588337 (+)

Expression


Co-expression Network