ehd2b (ehd2,ehd2b,LOC107565090,LOC107668886,LOC107670629,LOC107554987)


Basic Information

Item Value
gene id ehd2b
gene name ehd2,ehd2b,LOC107565090,LOC107668886,LOC107670629,LOC107554987
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 12905342 ~ 12914313 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265033.1
TTGTCATCACTCGTCGTCCAGGGCTCTCCCCTGCTTCTGCATCAGGCAGTGTTTGAAGAAGAGGTGCAGAGAGAAACGTAGGCAGGGAAAGAGGCAGTACTTGTCTGCATGCCTTAGAGCTGAGTTTGCTGGAGGAGTCAGAAGCACAGGCAGATCAGATCAAGACCTCTCATctgaaatacatgaaaaaacTGAGAAGAGCCATCACTTGAAACGTTTGACTTGGTGCTACTAGGGTGCCTTGGACAAAGATCATTCTTCTAAGATACATCCTCACGTGTAGAAACACGTCCTTTAGAAAGAGTCATCATCTCTTCAAGTTTTTCAATCCGAGACTCGACGTTCTCCAGgcaaaacatttgtttactaAAACTTTATAACTCCAGCGAACATCCCTTAACTACTGTAAACCTGTGAGGCAGAACACTTGGgtacattatataaatactgtaagaAAGAGAAGAGTCTTCACAGTCATCCCAGAGGACACGTAAACAGTGCAAAACAAAGCCATAAATTAACTGCAAAGGAAACTCTGAATACTCTCTCAAGTAGAAGATGTCACGCTGGGGACGCAAAAATGTCAAGAAGGCCCCTGAGGTGATCAGGACAGTGACCGAGGGCCTCAAGTCACTCTATCGAAAGAAACTCCTGCCCCTGGAGCAGTACTATGGCTTCCATGACTTCCACTCACCGAGTCTGGAGGACGCCGACTTTGACAACAAACCCATGGTGTTAGTGGTTGGTCAGTACTCCACAGGAAAGACGACCTTTATCAAGTATCTGCTGGAACAGGACGTCCCAGGGAGTCGTATAGGCCCAGAGCCCACCACCGACTGCTTTACTGCTATTATGCACGGAGACGTGGAGGGCATCATTCCTGGAAATGCCCTGATAGTGGATCCCAACAAACCCTTCCGCAAGCTCAACCCCTTTGGAAACACCTTCCTCAACAGATTCCAGTGTGCTCAGATGCCCAACCAGGTTCTGGAGAGCATCAGTATCATTGACACCCCGGGCATTCTCTCCGGTGCTAAACAGAGAGTGAGTCGAGGATACGACTTCCCGGCAGTTCTCCGCTGGTTTGCTGAACGTGTGGACCGGATCATCCTTCTCTTTGATGCTCACAAGTTGGAGATCTCGGATGAATTCTCAGAGGCCATCGGGGCTCTCAAGGGCAATGAAGACAAACTCCGTGTTGTGCTGAACAAGGCTGATATGGTTGACACCCAGCAGCTCATGCGGGTATATGGAGCTTTAATGTGGTCTCTGGGGAAAGTGTTTGGTACTCCTGAGGTGCTGAGAGTGTACATCGGATCTTTCTGGTCTGAGCCTCTCATGGTAACCGACAACCGAAAGCTGTTTGAGCTGGAGGAGGAAGACCTGTTTGCTGACATACAGAATCTGCCACGCAACGCAGCTCTACGCAAACTTAATGACTTGGTCAAGAGGGCCCGTCTTGTGAGGGTACATGCCCATATCATCAGTTACTTGAAGCAAGAGATGCCATCTGTCTTTAGGAAGGACAATAAAAAGAAGAACCTGATCTACCAGCTCCCAGTCATCTTCTCCAAGATACAGCTACAGCATCATATCTCTCCTGGAGACTTCCCTGATTGTGCCAAGATGCAGGAGCAGCTAATGGTACACGACTTCACTAAGTTCAAAGCCCTGAAGCCCAACCTGATGGCTATGCTGGATGAGTTGTTGTCTGCCGACATTGCCAAACTCATGCCCCTTCTTAGGCAGGAAGAAATAGAGGCTGGAGTCCAACCTGGGGTCCAAGGTGGGGCTTTCTTGGGAACCCGCGCCGGACCCTTCGTGGAAGGTGACCCCTTTggagaggccctggatgaaaaTGGTGAAGTGGGTGAGGAAGATGAGGAATGGGTGGTGACAAAGGACAAGCCCAAGTATGATGAGATCTTCTACAACCTGGCTCCGAACGAAGGCAAACTAAGTGGCACCAAAGCCAAAGATTGGATGGTGAGCACAAGGCTGCCAAACTCCGTGTTGGGCCGCATCTGGAAGCTCTCGGATGTGGATCGCGACGGCATGCTGGATGACGAGGAGTTTGCCTTGGCCAGCCACCTGATCGAAGTGAAACTGGAGGGTCACGGGCTGCCGCCTGAGCTGCCTGCCCGTCTCGTACCTCCTTCCAAACGCCGGCAAAAAGGCTCTGATGCTTAGACAATTCTCCCACGTGGCTTCCACTGATCTGTCTCCGCACTTCCTGCATGTTGTCCAGCTCCACAGCAGCTGCAGTGCATCTCCGTTCACTGTATTTTGTGCCATTTTGTACTCTGGTCATTTTGTAACACGCAATTAATGTCTTACTTTGTATTCTTGGTTCAAATGAAACAATTCAAAGATTCCCAGCTGGAAGCCAAAGAGCGTTGTGATAAACCAAAGACTGGTCTCAGTCATTTGGAAGGAATGTTGCATCTGTCACCATTCTTTTCCTGACAGTAACATCATGTGACATCACATCCAGAAACGCTACACAACTCAGTACATAGAACTTATAATGGCTCCTGAAACTAAGGGAtagcaaaaaaaactattgtagATAACAAACCTTTACAGTATTTTCTTAATTGTAGAAATCTATAGACTTGGCTTTACACATTTCTTCCATGTGGCTTTTAATGTAGTCAGCTAAAACAGAATGTGAAGTCAAGACAAGCACTTAAAACTCTGAAACTCAGAAACTCCTTTGACAGCAGACTCGAGGAGGCAAGTgaaaaaactttgtttttggaaaatgcaaATCAGTTTACTAGCATGTTGctgtctttgcttttaaaatcaaaaatgagaaatgctttATGTGtaccagttttgtttttgtattttttatagaaTGAGCTCTATGCATACTATGAACGAATGTCActatatataatgtcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatcaatttcATACAtgttaaagcaaaaaaacagtGGAGATTTCTTACTGACTACTGTAAACAGTTCCACTGACTGCTTCAGTTATCCAATGTTTTCACAGTAAATATATTGAGctgaataaagatttttttgactGTA

Function

symbol description
ehd2b Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Predicted to be involved in several processes, including cilium assembly; endocytic recycling; and protein localization to plasma membrane. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in cardiovascular system; epidermis; notochord; and pharyngeal arch. Orthologous to human EHD2 (EH domain containing 2).
ehd2 Predicted to enable nucleic acid binding activity. Involved in endocytic recycling. Located in several cellular components, including caveola; intercellular bridge; and recycling endosome membrane.

NR:

description
PREDICTED: EH domain-containing protein 2-like

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12469 EHD2; EH domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265033.1 True 3110 mRNA 0.45 7 12905342 12914313

Neighbor

gene id symbol gene type direction distance location
bicra gltscr1,LOC107758076,LOC107565091,LOC107554986,LOC107670631,LOC107668814,LOC107714538 coding upstream 759 12891984 ~ 12904583 (+)
dhx34 dhx34 coding upstream 29652 12868041 ~ 12875690 (+)
st14a LOC107758079,LOC107668533,LOC107554966,LOC107714535,LOC107670627 coding upstream 37619 12854160 ~ 12867723 (+)
LOC122362670 LOC107691836,LOC107758058,LOC107578181,LOC107572720,LOC107670622,LOC107714531 coding upstream 309953 12592067 ~ 12595389 (+)
nectin1b nectin1,pvrl1b,LOC107670612,LOC107691861,LOC107563312,LOC107758086,LOC107561861 coding upstream 526090 12189464 ~ 12379252 (+)
b3gnt2l LOC107758074,LOC107669052,LOC107554988,LOC107670608,LOC107753015,LOC107565088 coding downstream 12372 12926685 ~ 12931168 (+)
ilvbl ilvbl,LOC107758073,LOC107669134,LOC107753009,LOC107670636 coding downstream 42300 12956613 ~ 12966494 (+)
fam118b fam118b,LOC107669270,LOC107565084 coding downstream 54643 12968956 ~ 12978634 (+)
arfgap2 arfgap2 coding downstream 76535 12990848 ~ 13000860 (+)
large2 gyltl1b,LOC107670633,LOC107670096,LOC107554994,LOC107602128,LOC107758043 coding downstream 137655 13051968 ~ 13165194 (+)
G125784 NA non-coding upstream 263906 12641192 ~ 12641436 (+)
G125783 NA non-coding upstream 268959 12636156 ~ 12636383 (+)
G125760 NA non-coding upstream 315398 12579725 ~ 12589944 (+)
G125753 NA non-coding upstream 493097 12411865 ~ 12412245 (+)
G125750 NA non-coding upstream 510610 12393511 ~ 12394732 (+)
G125855 si:ch211-71n6.4,LOC107758068,LOC107753016,LOC107670624,LOC107578946,LOC105902995 non-coding downstream 95561 13009874 ~ 13012900 (+)
G125877 NA non-coding downstream 423441 13337754 ~ 13339066 (+)
G125879 NA non-coding downstream 432365 13346678 ~ 13346937 (+)
G125881 wt1b,LOC107717629,LOC107670615,LOC107758040,LOC107602104,LOC107575657,LOC107673204 non-coding downstream 436178 13350491 ~ 13351730 (+)
G125886 NA non-coding downstream 453103 13367416 ~ 13369511 (+)
G125836 NA other upstream 20730 12880588 ~ 12884612 (+)
G125830 NA other upstream 82561 12809450 ~ 12822781 (+)
trpc6b trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040 other upstream 1559545 11330221 ~ 11345797 (+)
selenot1b selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894 other upstream 1668195 11234331 ~ 11237147 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other upstream 1671528 11226113 ~ 11233814 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other downstream 2913 12917226 ~ 12925468 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other downstream 32528 12946841 ~ 12955945 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other downstream 302171 13216484 ~ 13222148 (+)
rpl35a rpl35a,LOC107673417,LOC107670602 other downstream 512731 13427044 ~ 13430765 (+)
daw1 daw1,LOC107727686,LOC107576612,LOC107717604 other downstream 755976 13670289 ~ 13706114 (+)

Expression


Co-expression Network