dhx34 (dhx34)


Basic Information

Item Value
gene id dhx34
gene name dhx34
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 12868041 ~ 12875690 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265099.1
ACTGTAAACACAGACGGACCAAAAACGGTCCTTTCAAGTTAGCGCTCCCGTATTGCACTTTTTCAAGAAGCGTAAATATCACAACACTGTGGTCTCAAATGCGCTGTACAATACCCGAGAAACGTCCACtctaaatatatgatataatatgaaATTAAGGTGAGATCATCTCAGAGATCATCATTAAAGATGTCCCGCGAGCGAGAAGACAGTCGGAGCTGGGACTGGGACAGTCCTCAGTGTCGAGCCCAGCTGGACGAGGTGTTTTTCCGCCACCATGACTACATCCAGACGGGCAGCGCCGAACACAGAGAGTTCTGGAGCTTCTTTGAGCGCTTTCAGAGATTCAAAGCCAAGCGGGAGATGACCGCGGCCAAGTCCAGCAAGCAGGAGTCACACGAAGGAAAAGCCAGGAAGAAACCCGGATCCGTGGATCTGGGGCTTCCAAAGGACTATGATGCCAGGTACAGGATCAACATCTCCGTGTGCTCCAAAGACATAGAGGAGCGCCTGGGAGGACCTGAGCACAAGAGGCGCAGGGACCCCTCCGGTCCTGGCAGGCAGGAGATCGCAGACTGCCGTCTTGCTCTCCTCCATTTCCTAGACTTCAACCAGAAGCAGAGCTTCAGCAAGCTTTCCAAGTTAAGAAAGGAGCAGAGGAGCCTCCCCATCTTCCAGTACCGGGACAGGATAGTGGAGCTGGTGAGGACTCATCCTGTGGTGGTGGTGGCTGGAGACACAGGATGTGGAAAGTCCACACAGGTGCCCCAGTATCTGCTGGCATCAGGATTCAACCACATAGCCTGTACTCAACCGCGCCGCATCGCCTGCATCTCGCTGGCCAAGAGAGTCAGCTTTGAGAGCCTCAACCAGTACGGCTCCAAGGTTGGGTACCAGATCCGCTTCGAGACCAGCCGCACCACAGCCACCAAACTGCTGTTCCTGACCGAGGGCCTCCTGCTCCGGCAGATCCAGCGGGACGCTTCCCTGGGCCAGTACCAGGTCCTGATCGTGGACGAGGTGCATGAGAGACACCTCCACTGTGACTTCCTGCTGGGAGTGCTGCGCTCGCTTCTGTCCCTGCGTCCGGACTTGCGCCTCGTCCTCATGTCGGCCACCATCAACATCAAACTCTTCTCCAGCTATTTCAACGAGGCACCCGTCCTGCAGGTGCCAGGCAGGCTCTTCCCTATTCAGGTGATCTACCAGCCCATCCCTCCAGAAGAGCAGGTGTCCCGCTCGGAGAAGCTGGACCCGCGGCCGTACCTGCGTGTGCTGCAGGGCATCGACCAGCGGTACCCGCCGGAGGAGAGGGGAGACCTGCTGCTGTTCCTCAGCGGAGTGGCTGAGATCTCCACCATCCAGGAGGCCTGTCAGACgtacgccacacacacacagcgctggATCGTCCTCCCTCTGCACAGCACACTCTCACTGGCCCAGCAGGATAAGGTGTTTGACATCGCACCCCCAGGTGTGAGAAAGTGCATCATTTCTACCAATATTGCTGAGACCTCAGTCACTATAGATGGAGTGCGCTTTGTGGTCGATTCAGGAAAGGTGAAAGAGATGAGTTTTGATCCAAAGGCCAAGATGCAGAGGCTGCAGGAGTTCTGGATCAGTCGAGCCAGTTCTGAACAGAGGAAGGGACGAGCGGGCCGAACCGGACCGGGAGTGTGTTACCGACTCTACTCTGAATCCGATTATGACGCCTTCGCGCCGTATCCTGTTCCTGAGATCCACAGGGTGGCGCTAGACTCCCTCATCCTACAGATGAAGAGCATGGGTCTGGGTGACCCTCGCACTTTTGCCTTCATAGACCCTCCTCCCGCTTCTAGTATTCAGACTGCAATGATGTATCTGAAAGAACAGGGGGCTCTAGATGAAGTCGGGGAGCTCACCTCTATTGGCAGGCTGCTGGCTCAACTCCCTGTGGATGTGGTCATTGGAAAAATGCTCGTTTTGGGTTCGGTCTTTAACCTGGTGGAGCCGGTGTTGACGGTTGCCGCCGCGCTGAGTGTCCAGTCTCCCTTTCTGCGCAGTGCCCAGCACAACCCCGACTGCTCCACTACTCGCCAGCCCCTGAACAGCAACCAGGGCGACCCCTTCACTCTCATGAACACCTTTAATGCCTGGGTGCAGGTGAAAGCAGACAGAGGAAGTGGCTCCAGAAAGTGGTGCAGGAGGAGAGGGCTGGAGGAACAGAGGCTCTACGAGATGGTCAACCTCCGACGACAGTTCAAAGAGCTGCTGCGGACTCACGGCCTGCTGGAGACGGATACGGGCAGCAGGACCGGGCCTCAGGACCGAGCCCGGCGCAGAGAGAGGcttacagagagacagaagctCCACCAGCTGAAACGAGACCATGAGCTCCAGGAGAACACCAAGAGGAGAGTCCTGCGTCTGGAGGAAGGACTGGAGGGAGATGCCCTGTCTGGGTCAGACGATGAGGGAGCAGGGTCGAGCAAGAAGAGAAGAGATGATGCTGAACAGACCGTGGACATACAGGAAGTCAAGTTCAAATTACGTCACAATGTGAATGAGCTGCAGGAAGCGGCATACGCCAGTGCAGATCTGTCCTCCCGGCAGCAGTCTCTGCTCAAACTGGTGCTGTGCCGGGGCCTTTACCCACAGCTGGCCGTGCCAGATGAGCACAACGCAAACCGCAAAGACTCTGAGCAGgTGTTCCACACACGAAACAAACAAGGCATTGTGATCCACCCGACCAGCGTGTTTGCCAGTGACCCCGAAGTTCTGCACGTCCCCGAGCACGAGACCAGCGAGTTTGGTGCTGATAAAGGCCAGAGCAACAGGCATCAGTTACTGGCTTTCGTTACTCTGCTAGAAACAAACAAGCCTTACATCTCTAACTGTTTGCGGGTTCCAGCGCTGCAGGCTCTGCTGCTGGTGGCCAGCTCTGTGGACAGTAACGCTGACTGCACTCGGGTGGTGGTGGACGGCTGGCTGGAGCTGGGCCTGACCGACGGAGACTCTGCGCTGAAGGTGCTCTCCTCGGCCCTCAGTCTGCGTGGCGAATGGGAGAGGCTTCTCCAGGCTCAGATCGGGCAGGGCGGCCCGGGCTCCTCCGCCGGACTCGGCTCGGCCGGGCCCAAAGTGTCCCGCAAAGAACTGGACAAGCTCTGTGAGGGACTGGTGCGCTTTCTGTTATACACTGAGGTTAGTTACAGCCTGAGGCGTCTGGCGGCGCTTCAGTCTCAGAACCTGTACATCGGACCGCAGCTGGATCCCGATCTGTCTTCCGCTTCGGCTATCGGCTCTCTGTTTCCTGGCATGAAAGCCGAACCAGATCCCATTAAAGGAGGCCTGCGTTTGTGCAGCTACTTTACCTACAACTGTCTATGTGACTCTAAGGACCTGTACAGTGAATGTTTACGCACTTTTTGGAGCTGCCCTCACTGCGACCTTTACATGCCCCTGACGCCTTTGGAGCGCATGCAGCACGAGGCCACCTGCAGGCCGCCGGAGGAACAGCAgcctgaggaagaggaggaagagTCTGAAAGCGTACAAACGTCCTCATCCTCTTCATCGGGCCTGACTAGGGTCTACCATTGTGACGTCTGCAATAAAAACCTGACCCTTACCTCGACGGAGATCCTGAAACACAAGCGCCAGCACCTGTCCTGAAGTCACAGCTCGCACTTTTCTGTCCATCCGGTTCTTCTGTATTTAcggtacatttttaaataaatgcgaAAACTCTTAA

Function

symbol description
dhx34 Predicted to enable RNA binding activity. Involved in negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and nuclear-transcribed mRNA catabolic process. Acts upstream of or within chordate embryonic development and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human DHX34 (DExH-box helicase 34).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K20101 DHX34; ATP-dependent RNA helicase DHX34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265099.1 True 3730 mRNA 0.56 16 12868041 12875690

Neighbor

gene id symbol gene type direction distance location
st14a LOC107758079,LOC107668533,LOC107554966,LOC107714535,LOC107670627 coding upstream 318 12854160 ~ 12867723 (+)
LOC122362670 LOC107691836,LOC107758058,LOC107578181,LOC107572720,LOC107670622,LOC107714531 coding upstream 272652 12592067 ~ 12595389 (+)
nectin1b nectin1,pvrl1b,LOC107670612,LOC107691861,LOC107563312,LOC107758086,LOC107561861 coding upstream 488789 12189464 ~ 12379252 (+)
LOC122323085 LOC107691900,LOC107574923,LOC107715548 coding upstream 966085 11898259 ~ 11901956 (+)
pgr LOC107563516,LOC107691935,LOC107732778,LOC107709819,LOC107684613 coding upstream 1507236 11351812 ~ 11360805 (+)
bicra gltscr1,LOC107758076,LOC107565091,LOC107554986,LOC107670631,LOC107668814,LOC107714538 coding downstream 16294 12891984 ~ 12904583 (+)
ehd2b ehd2,ehd2b,LOC107565090,LOC107668886,LOC107670629,LOC107554987 coding downstream 29652 12905342 ~ 12914313 (+)
b3gnt2l LOC107758074,LOC107669052,LOC107554988,LOC107670608,LOC107753015,LOC107565088 coding downstream 50995 12926685 ~ 12931168 (+)
ilvbl ilvbl,LOC107758073,LOC107669134,LOC107753009,LOC107670636 coding downstream 80923 12956613 ~ 12966494 (+)
fam118b fam118b,LOC107669270,LOC107565084 coding downstream 93266 12968956 ~ 12978634 (+)
G125784 NA non-coding upstream 226605 12641192 ~ 12641436 (+)
G125783 NA non-coding upstream 231658 12636156 ~ 12636383 (+)
G125760 NA non-coding upstream 278097 12579725 ~ 12589944 (+)
G125753 NA non-coding upstream 455796 12411865 ~ 12412245 (+)
G125750 NA non-coding upstream 473309 12393511 ~ 12394732 (+)
G125855 si:ch211-71n6.4,LOC107758068,LOC107753016,LOC107670624,LOC107578946,LOC105902995 non-coding downstream 134184 13009874 ~ 13012900 (+)
G125877 NA non-coding downstream 462064 13337754 ~ 13339066 (+)
G125879 NA non-coding downstream 470988 13346678 ~ 13346937 (+)
G125881 wt1b,LOC107717629,LOC107670615,LOC107758040,LOC107602104,LOC107575657,LOC107673204 non-coding downstream 474801 13350491 ~ 13351730 (+)
G125886 NA non-coding downstream 491726 13367416 ~ 13369511 (+)
G125830 NA other upstream 45260 12809450 ~ 12822781 (+)
trpc6b trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040 other upstream 1522244 11330221 ~ 11345797 (+)
selenot1b selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894 other upstream 1630894 11234331 ~ 11237147 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other upstream 1634227 11226113 ~ 11233814 (+)
G125496 snrpd2,LOC106612977 other upstream 1898274 10968085 ~ 10969767 (+)
G125836 NA other downstream 4898 12880588 ~ 12884612 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other downstream 41536 12917226 ~ 12925468 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other downstream 71151 12946841 ~ 12955945 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other downstream 340794 13216484 ~ 13222148 (+)
rpl35a rpl35a,LOC107673417,LOC107670602 other downstream 551354 13427044 ~ 13430765 (+)

Expression


Co-expression Network