odf3b (odf3b,LOC107686589,LOC107710372,LOC107559895)


Basic Information

Item Value
gene id odf3b
gene name odf3b,LOC107686589,LOC107710372,LOC107559895
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20654532 ~ 20657823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265109.1
TCAAAAAGAGTCGCAGCAGCTGAGAGATTGATTAGAGCTCTTCGCGAgctacatttatacatttattttaccgTTCTATGTCAATAACGTCGTTTTCGTGCAGACATCGTAAGTGACGTCGTTTTAATTTATCCAAGTCATCATCAACGCGCTCGATACAATCCACGCGATAATATATTAAAGTGGCTTTGAACGagtatttctttcaaaaacagaacTTGTATTAAATTCACGAATTTGTAACATCTTGCTCTTAAGACATGTCGCCTGTGGAAGTATGGGCTGGCCCTTGGAAGCCCCACAGGCCAAGGGGCCCCATCGCTGCAATGTATAACAGTCCAGGGCCAACATATGCTCTGCCAGGGGCAactgGGATGAACAATCACGACCCGCGGATGCAGAAAGGCCCAGCGTTTAGCTTCGGCACACGTCACCGTAACTCACAGGCCAACTCGTCCCCCGGTCCTGGATACCTCGTTCCCTCCAACATCACCAGGGTGGGTCGGGATGGGACCCCTGCGTTCTCCGTCTACGGCCGACCAAAAGACATTCGGCCGTTTAAAACCCCAGGCCCAGgCAGTTACTCTCCAGAAAACGCGACAAAAACCACCTTTTACTCTGCCCCTGCGTTCTCTCTGTCTGCGAGGACTAAATTGTTCCGTAACGATCAAACACCAGGTCCAGCGGCATACATGCTTCCCCCGGTGTTAGGGTCGGGAGTTGTGAATAAAGCATCTGCCCCAAACGTCTTCTTCGGCGGTCGTAGTGCAATCGGCAGCTTCCACGAAGATCTACGAAAGACTCCAGGCCCAGGGACCTATCAAGTGGTGGATTCTGGAGTGTACAAGAACAAGGCCCCTGAGTACAGCATGACCGGACGCAACTTCTCACCTGGAGACACTACAAAGAAACCAGGACCTGGAGCCCACCATCCAGAGAGGGTTACTTTCACAGGAACCAAAGCTCCCAGCTTTTCCTTTGGAATTCGCCATTCTGAGTACACCGCTCCTTTAATTGTGGATGGGGCTGATTAAACAGGTCAATTCTGTTAAACAAGCTAGTCTGTCGTATCAGGTCTTAATATGGCCAAAATATACAACTTGAAATAATGGTGTTTCAGTGAAAAAGGGTCCCGGATGCAATAATTGTGCTGTTGCCACAATATAAGAAAAAGGTCCAAAACCAAGTCTACCTACTACCACTTTACCACATCACAGACTAAATCTATTAGTGCTGGGTCTGATTCATCCTTGTTAAATCCGAGTCAAGTCCAAATGCTTAGATGTTTGAGTTGGTGCTTGTTTATAATTGCAGTCTGAGTCCAAATTCCCCATCTCTACATGCAGAGGTTGTTTCACAAtatcaaatcaataaaaac
>XM_043265111.1
TCAAAAAGAGTCGCAGCAGCTGAGAGATTGATTAGAGCTCTTCGCGAgctacatttatacatttattttaccgTTCTATGTCAATAACGTCGTTTTCGTGCAGACATCGTAAGTGACGTCGTTTTAATTTATCCAAGTCATCATCAACGCGCTCGATACAATCCACGCGATAATATATTAAAGTGGCTTTGAACGagtatttctttcaaaaacagaacTTGTATTAAATTCACGAATTTGTAACATCTTGCTCTTAAGCAGACATGTCGCCTGTGGAAGTATGGGCTGGCCCTTGGAAGCCCCACAGGCCAAGGGGCCCCATCGCTGCAATGTATAACAGTCCAGGGCCAACATATGCTCTGCCAGGGGCAactgGGATGAACAATCACGACCCGCGGATGCAGAAAGGCCCAGCGTTTAGCTTCGGCACACGTCACCGTAACTCACAGGCCAACTCGTCCCCCGGTCCTGGATACCTCGTTCCCTCCAACATCACCAGGGTGGGTCGGGATGGGACCCCTGCGTTCTCCGTCTACGGCCGACCAAAAGACATTCGGCCGTTTAAAACCCCAGGCCCAGgCAGTTACTCTCCAGAAAACGCGACAAAAACCACCTTTTACTCTGCCCCTGCGTTCTCTCTGTCTGCGAGGACTAAATTGTTCCGTAACGATCAAACACCAGGTCCAGCGGCATACATGCTTCCCCCGGTGTTAGGGTCGGGAGTTGTGAATAAAGCATCTGCCCCAAACGTCTTCTTCGGCGGTCGTAGTGCAATCGGCAGCTTCCACGAAGATCTACGAAAGACTCCAGGCCCAGGGACCTATCAAGTGGTGGATTCTGGAGTGTACAAGAACAAGGCCCCTGAGTACAGCATGACCGGACGCAACTTCTCACCTGGAGACACTACAAAGAAACCAGGACCTGGAGCCCACCATCCAGAGAGGGTTACTTTCACAGGAACCAAAGCTCCCAGCTTTTCCTTTGGAATTCGCCATTCTGAGTACACCGCTCCTTTAATTGTGGATGGGGCTGATTAAACAGGTCAATTCTGTTAAACAAGCTAGTCTGTCGTATCAGGTCTTAATATGGCCAAAATATACAACTTGAAATAATGGTGTTTCAGTGAAAAAGGGTCCCGGATGCAATAATTGTGCTGTTGCCACAATATAAGAAAAAGGTCCAAAACCAAGTCTACCTACTACCACTTTACCACATCACAGACTAAATCTATTAGTGCTGGGTCTGATTCATCCTTGTTAAATCCGAGTCAAGTCCAAATGCTTAGATGTTTGAGTTGGTGCTTGTTTATAATTGCAGTCTGAGTCCAAATTCCCCATCTCTACATGCAGAGGTTGTTTCACAAtatcaaatcaataaaaac

Function

symbol description
odf3b Predicted to be located in cytoplasm. Predicted to be active in cytoskeleton. Is expressed in peripheral olfactory organ; pronephros; and testis. Orthologous to human ODF3 (outer dense fiber of sperm tails 3) and ODF3B (outer dense fiber of sperm tails 3B).

NR:

description
PREDICTED: outer dense fiber protein 3B

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265109.1 False 1378 mRNA 0.47 7 20654532 20657823
XM_043265111.1 True 1381 mRNA 0.47 7 20654532 20657823

Neighbor

gene id symbol gene type direction distance location
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding upstream 862 20648300 ~ 20653670 (+)
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding upstream 20896 20629743 ~ 20633636 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding upstream 36352 20609937 ~ 20618180 (+)
syt1b syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864 coding upstream 89226 20561835 ~ 20565306 (+)
cers3b cers3b,LOC107559674,LOC107733272,LOC107662883,LOC107686553,LOC103029792 coding upstream 115914 20532906 ~ 20538618 (+)
rabl2 rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941 coding downstream 8930 20666753 ~ 20671837 (+)
arsa arsa,LOC107710387,LOC107599918,LOC107560065 coding downstream 270692 20928515 ~ 20933433 (+)
chkb chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153 coding downstream 305305 20963128 ~ 20969701 (+)
LOC122362691 LOC107719968,LOC107671151,LOC101886608 coding downstream 312269 20970092 ~ 20972842 (+)
cpt1b cpt1b,LOC107686536,LOC107599889,LOC107671150,LOC107710383,LOC107559523 coding downstream 315692 20973515 ~ 20980699 (+)
LOC122363025 NA non-coding upstream 6824 20641765 ~ 20647708 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding upstream 65669 20586051 ~ 20588863 (+)
G127860 NA non-coding upstream 82222 20562083 ~ 20572310 (+)
G127785 NA non-coding upstream 270774 20325330 ~ 20383758 (+)
LOC122362840 NA non-coding downstream 212052 20869875 ~ 20887115 (+)
G127935 NA non-coding downstream 236954 20894777 ~ 20937442 (+)
G128148 NA non-coding downstream 422946 21080769 ~ 21081291 (+)
G128149 NA non-coding downstream 470730 21128553 ~ 21129033 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding downstream 504063 21161886 ~ 21162751 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 13473 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 54013 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 97905 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 105175 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 560931 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1743121 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1776983 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2799277 23457100 ~ 23736848 (+)
G128858 NA other downstream 3791942 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3926022 24583845 ~ 24588337 (+)

Expression


Co-expression Network