LOC122363152 (fam180b,LOC107596959,LOC107738700,LOC107708214)


Basic Information

Item Value
gene id LOC122363152
gene name fam180b,LOC107596959,LOC107738700,LOC107708214
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4280090 ~ 4281937 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265119.1
TGTGGGGCTAACACGGATGACGACCGAAAGCTGCGTGATTCAAgcggtgttttatttttgtggcaaTGTTGTTGACTCAGATTAAAGTGGCATGTGTCGTCCTGTGCCTTATTGGCTTCAGGGAGCCCTGGAATACCTCAGATGTTACAGCAGTTCTGCACGGAGGACTCGCACATCAAGGTTTCATCAGATCTGAAAATGATGCTAACCTGATGTTTGAGTTCTTATGGAGTGGACTTGAGATTGATGCTGACAATAACATTGTCATGCGAGATCAAGAAATTGCATCAATGCGACAAGGGCGAGCTTTCTTATCTCTTATAAACGACAGCATCCCAAAAACTGTCTCTGCAATGGAGAATTTACTGGCTGAGCTGGAGAAGCAAGACAACTCTTTTACTCAGGCCCGTTTTGAGACCCTCCTCCTTGGGACCGTCTATTCAGCCTATCAAGCACGAAACCAGAGGCTAGAGTCCGAGCAGCAGGCCTGGAAGGACATTCTTGGTCGTTTGGCAAATGTTACTTTCGTTCAGCTACGCAGGTCTTAACTAACAATAAACACACCAGTGATTCAGAAGTGCACACGTAAAGAAAATCAGATAAAGAGTGTGCATATTTGGCGTGCTGTCCGAGGGGAGGGCTCTGAGCTTGGAATTTGGCCTGAACTCAGAGTACTCCTCCATATCCTAGGCTGGGATAGGAAAAGTCGAGAGTGAGGAGTTATGGTGGTGAAGGGATGCTGGAAACTGTTGAGGGACAGAGGTGAGTCGACTATGTATATATACTCCTCTCGTGCTGATAGGGTAGATTATCTGAACGTGTTCctcacaaattttaaataaacatcatttaaagtAACACCCTGATTATTTGTCCCTTGTTTCTATCT

Function

symbol description
fam180b Predicted to be located in extracellular region.

NR:

description
PREDICTED: protein FAM180A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265119.1 True 889 mRNA 0.45 3 4280090 4281937

Neighbor

gene id symbol gene type direction distance location
ighmbp2 ighmbp2,LOC107738695,LOC107596955,LOC107708224,LOC107583861,LOC107672301 coding upstream 16379 4257020 ~ 4263711 (+)
dennd11 LOC107738692,LOC107708228,LOC107686315,LOC107672298,LOC107583753 coding upstream 26798 4246548 ~ 4253292 (+)
bcl2l13 bcl2l13,LOC107738690,LOC107708230,LOC107686320,LOC107672257,LOC107583859 coding upstream 42878 4224780 ~ 4237212 (+)
wnt2 wnt2,LOC107708232,LOC107738769,LOC107660945,LOC107596948,LOC106561551 coding upstream 56970 4215421 ~ 4223120 (+)
asz1 LOC107660944,LOC107596949,LOC107672320,LOC107708231,LOC107583750 coding upstream 66093 4200381 ~ 4213997 (+)
paqr5a paqr5a,LOC107686313,LOC107596958,LOC107738698 coding downstream 5510 4287447 ~ 4291461 (+)
kif23 kif23,LOC107708211,LOC107672274,LOC107686310 coding downstream 10300 4292237 ~ 4301878 (+)
aagab aagab,LOC107596965,LOC107686304,LOC107738712,LOC107718310,LOC107672261,LOC107583761 coding downstream 303252 4585189 ~ 4588702 (+)
snapc5 snapc5,LOC107672220,LOC107596973,LOC107686356,LOC107583772 coding downstream 441102 4723039 ~ 4725612 (+)
lctlb lctlb,lctl,LOC107596968,LOC107686298,LOC107738718 coding downstream 444513 4726450 ~ 4735467 (+)
G124295 NA non-coding upstream 96439 4182733 ~ 4183651 (+)
G124294 cftr,LOC107583749,LOC107738689,LOC107596947,LOC107672176,LOC107708216 non-coding upstream 97699 4181385 ~ 4182391 (+)
G124293 cftr,LOC107596947,LOC107738689,LOC107708216,LOC107672176,LOC107583749 non-coding upstream 98801 4180426 ~ 4181289 (+)
G124292 NA non-coding upstream 100734 4179040 ~ 4179356 (+)
G124161 NA non-coding upstream 144490 4135383 ~ 4135600 (+)
G124427 NA non-coding downstream 179908 4461845 ~ 4462124 (+)
G124425 NA non-coding downstream 194610 4476547 ~ 4477879 (+)
LOC122323045 NA non-coding downstream 406097 4688034 ~ 4691944 (+)
G124497 NA non-coding downstream 462823 4744760 ~ 4745307 (+)
G124498 NA non-coding downstream 463666 4745603 ~ 4745835 (+)
nrn1la LOC107726468,LOC107694939,LOC107583849,LOC107596927,LOC107733575,LOC107672183 other upstream 536334 3719888 ~ 3743756 (+)
tmem170a tmem170a,LOC107596918,LOC107583727 other upstream 725400 3511957 ~ 3554690 (+)
chd2 chd2,LOC107690375,LOC107715217,LOC107693036,LOC107715589 other upstream 1818300 2410733 ~ 2461790 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other upstream 1960950 2301758 ~ 2319140 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other upstream 2039830 2207199 ~ 2240260 (+)
LOC122322928 megf11,LOC107596974,LOC107686294,LOC107672222 other downstream 477691 4759628 ~ 4795836 (+)
G124548 NA other downstream 789708 5071645 ~ 5110633 (+)
G124553 NA other downstream 857553 5139490 ~ 5140671 (+)
G124577 NA other downstream 943871 5225808 ~ 5226057 (+)
G124580 NA other downstream 946626 5228563 ~ 5229946 (+)

Expression


Co-expression Network