LOC122362644


Basic Information

Item Value
gene id LOC122362644
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25034118 ~ 25049605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006253141.1
CGAGTGTTCAGGAAGTAATCGGAGACAGCATTCCTAATATTTAGGGTTGTTTTGGGGTTACTTGAACATTTTCCAAACTACACAACCATAAATGACCTCAGACTGACCACTAAtactaatgttttaatgttacaaattatTGTCAATTAATCAATGACATAACTTGTGAATGGCACCTCATCAAAAAAGGATGGCACGTGTTCTAAGCACAAAAGTCTGAATAGATTCGCTGATGTTACACATGATGGGATTCCAGTTATCTGTGTTTTTGCTTGTAGTTTAAACTTCCTGAGAACATAGAAGGACTGCACACACGCATGTATAATGTTTAAACAAGTGTTACACGTTCCCTGGAGCTACACCCGCTTCGTCAGGCGTTCAATCAAATATAGTGACATTGCATTATGTGTGCTGGATCTTGAAGGGAATTATTAACCCAAAAAAATCAAAgttagctaaaaaaataaatcaaattagcCAGCCTCGGGCCATTAAAGATCTGATCTGAACTGATTTGTAGAAATGtatcattacatcacttgctcacaaatggatccactgcagtgaatggacattctgacggcacccattcacttcagaggatgCATAGCGAGCCAGCGATTTAAGCTACATCTCTCCAAATctgatctgatgaagaaacaaactcatctacgtcTCGGATAaactgaggACCCCACAGAGAACACCTGAACATCCATCTGCAAAGGGGCCGCGCTGGACATGCCGCACGGTCCAGGGACAGCTTCATCAGAGCTTCTCACAGAACAGATGGAGAAGTTTGGAGAAGAAAACCTTTGCTCCAATCTGTTGCCCCTGTCAATCCAATACTGGGCTGATCAGATAATACAACAGAGCTCAACTAGAAAATGAGGATACAGCTGTGAACGACAACAGACAGACGTGGGACAGTTGAAACATCTGACACCCCAATAGGATACCCTCTCTGGTTTGAATTAGACCTTCATTCCACGGGGTCCAAAGGGTATCGTAAAAAGacagtttattttttgccaGAAATATAGTCCGGAGAATGTTATCTGTCTGTTGAGCTGTCTCTGGAAGCGTCATATTGTAGTAATGATTAAAAGCACTGTCATTTTTACGGTTACGCGGCTGGATTTTGAGTAAATATGTAGGAAGAGCTTAGCGGGATCTCAGGTGGTTGATTTTCCTTGAGGCCTCTGgtgtattttgaaatgtttttaatgatgaGTCAAAAGCCATGTGAGTTAAAGTGATAAATCGTGTATATTTCGCATCTAAGGGTTGTGACTCTTCTCATTTGGTATTTGAAAAGACATTCAGGTATTGCAAAAGAGTATCAGTCACATGATGCTTTTGAACCGCACACGACAGACCGGTTTAGAGCCGTCTGTGTAAAAGTAGCGGATTTATGAAGATGCGGGAGGGATATGAGTGGAAAAAGGTAAATGTTATGTTAGCGAGGGTGCCAATCATGTGCCATGTTTAGTAAGATGGAGCGGTTGTCATCCTTCTAATGTTTGTTAAACATTCTCCGAGCCAGATCATTTAATTCACAACAGTCCTCTGTAATCGCAAAAATAATTACTTCACCCCCCACAGCCTACGAGATAATTGCATTTGATTTACGTTCGCTTTAAATggaatatgaaaaacaaaatcgGAATCTAAGAACAACCGCTGTGCCTGAAtatttttagtgtgtgtgtgtgtgtgtgtgtttcaattGGAATGTAAATGTTTGATAGAACGGGGCTAATATGGGGACAACAAATGagcattttctacttttttcttattcttgCATTTTATCTCTATCACAGCGGGTCAAAAAATAGACCGGGAAATACACAGTTGACAGGTTTGGAATAAAAGACATACATTTAAGATTCAACACTATTTTTAAGCgtgcattttacaaaagcacaagATGCTCTTTGGATCGTTTTTAAAGTGTGCTGGAGAACATTGTCAGGACCGCTGTAAGCAAAGCAAACTGagtacacattaaaaaataagactgaatttaattgattgattaaattaaactcAATTTTATACTCATTATGGCTGCATttcttgatcaaaaatacagaaaaaattgtaatattgtaaaatgttattacaatttaaaatgctattttcagGAGGTCATTATTCCAGTGTCATATTATCCTGCAGAAATAATTTTATGCTAaattggtgctcaagaaacattacttATCATTATCAATGCTTATTTCGGTGGaaaccatgattttttttcctcggttagtcaaaatgaatgaaacacaatAGAATGAGTAGAAAGATCTTTgtcttaaaatatatgtatctGCTAGTTGCCATGAGATTAACATCATTATATTGTCAAGAGTTTCTGCCCTGAGACCTGTCAGATTCAAACGTGCTTCAACAAGAATAGCAATGATGTCAGCTCCGATGATTCAAAGATGCTGTTTTGGTTTGAATGAACGATCTGTGCCAAATGCTTTAGCATGATGCACCATTATGACAAGAATCTTGAAAGCAATTAAAGAAAAGTAGCAAGTACAGATACatttttggtggctttttaCATTCAATAGTTCATACAGGGCAGGCCATCCACTTGCTTTGCCTCTGACCCCGGCAGATATTTCCCCAAATCAGTCCAAGCTTCATTGCAacatggaaaataaaagaataaatcacATTGCCAAACTCTTTGAACCTGTGAGGCCGCAGACACATTTTTCCTATTTAGAGCCTCTCTCGAAGTCTCTCTGCATCCACGGCACAGCATCCATTCCAAGAGTGTGCACACGCCAGTGTTGCGTGTTGACTGCGAGAACTGCGCTCTGTTGTGTTCCTTGCTATTTCCTCCCATCAGAccacaggcttttttttttccctcatttgATTAATGCTGAGTTAATGACCCCCCATAGACCAGAGGACCAGGCAAAAAATGTTAAGCATCTTAAACCGTTGCAGCTTGTTTGCTCAAACTGTTTATGGGGCACAAGGACATGCTATAAACATAGAGTAAAGAGCAAGCAATGGAAACGGTTTTGTGCGCTGTGGAATGTAGCAAACTCTTTCGCTTTGTTTTAGAAGAGTTGTTTCATATGTAGCTGAATTACCGTTTGGCACCCCAGGATGATTTGGATGCAATGgatgcgtttttttttgtttttgctgataCTCTGAACACTAGAATTGAATCAAATTGAATTGAACACTTGTTGGAGGAGTCTATTGTAAtttatcacattttcatttaaacgtATAATACTGTGTGTATCTGATTATACTGAGTGTGTGAGTTGATCGAGATATGTTCTAAGCatacacaatataaaatcaaGCCAATTCTCTGAAATATAGGAAAACGTTTGGTAAGATATGTATGTGGCTAAGCTGTCACATCCACcacaaataaatcttttttttttaaatattgaatcaCATTTTGGTGAACTGGCAGTAGCCTATATAAAACCTCATAAATTACTTGGCTAATCATTAGGcatgaatttttaaatagtgCAGTTTTAAAGTATAGTGTAGGCTTCAGTGTAGGACTGTAAAAtcaattcatatatatttatactacaCTAACACAAACCTTTATGAAAATTAACAAATTATGTTTCAGTTTGTTGGACtgcttttaaatattcttaatattaaaatgttttctgcttGGTCATGTAAA
>XR_006253142.1
CGAGTGTTCAGGAAGTAATCGGAGACAGCATTCCTAATATTTAGGGTTGTTTTGGGGTTACTTGAACATTTTCCAAACTACACAACCATAAATGACCTCAGACTGACCACTAAtactaatgttttaatgttacaaattatTGTCAATTAATCAATGACATAACTTGTGAATGGCACCTCATCAAAAAAGGATGGCACGTGTTCTAAGCACAAAAGTCTGAATAGATTCGCTGATGTTACACATGATGGGATTCCAGTTATCTGTGTTTTTGCTTGTAGTTTAAACTTCCTGAGAACATAGAAGGACTGCACACACGCATGTATAATGTTTAAACAAGTGTTACACGTTCCCTGGAGCTACACCCGCTTCGTCAGGCGTTCAATCAAATATAGTGACATTGCATTATGTGTGCTGGATCTTGAAGGGAATTATTAACCCAAAAAAATCAAAgttagctaaaaaaataaatcaaattagcCAGCCTCGGGCCATTAAAGATCTGATCTGAACTGATTTGTAGAAATGtatcattacatcacttgctcacaaatggatccactgcagtgaatggacattctgacggcacccattcacttcagaggatgCATAGCGAGCCAGCGATTTAAGCTACATCTCTCCAAATctgatctgatgaagaaacaaactcatctacgtcTCGGATAaactgaggACCCCACAGAGAACACCTGAACATCCATCTGCAAAGGGGCCGCGCTGGACATGCCGCACGGTCCAGGGACAGCTTCATCAGAGCTTCTCACAGAACAGATGGAGAAGTTTGGAGAAGAAAACCTTTGCTCCAATCTGTTGCCCCTGTCAATCCAATACTGGGCTGATCAGATAATACAACAGGGCTGGATCTTTTCACTGTTTATTAGGGGCGACTGAGAGCGTGTTCTTAAGCCAAGTTTCATGGAAAACGCTGCCGCTCAGGGGCAAAGCATGAACAAAGAGTGAGAGAGGGCAGGTTAATTTGGAGATCAGTGAAAAGAGATGAACAGAGTGCGAGTCGGCTGGTGAGGAGGGGAGGAAGCACCTGCATGTGGGTGGCGATCGCTGCAGCTTCTGTGAAGAAGGGAGGAGGGAAGCAGCGAACAGCTGACGGGCTCAAGGTGAAGTTCAGAAAAAAGAAGTGCCCCTTCACCTGATATGAGTTTCCCACTGCCTATTTTTATTGAGACAACCCAGAAATAATTTCTCATACacattttcagtcatttataTTAGGCTTATGATAAATTTGTAG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006253141.1 True 3703 lncRNA 0.38 4 25034118 25042184
XR_006253142.1 False 1267 lncRNA 0.43 4 25034118 25049605

Neighbor

gene id symbol gene type direction distance location
rnf141 rnf141,LOC107686251,LOC107730548,LOC107672299,LOC107740332 coding upstream 20498 25009287 ~ 25013620 (+)
lyve1b NA coding upstream 25654 25006079 ~ 25008464 (+)
eif4g2b eif4g2b,LOC107730533,LOC107569652,LOC107672256 coding upstream 34848 24990583 ~ 24999270 (+)
LOC122323238 NA coding upstream 38168 24995771 ~ 24995950 (+)
nts nts coding upstream 193962 24836247 ~ 24840156 (+)
c18h11orf16 LOC107740346,LOC107672206,LOC107686328,LOC107750774,LOC107583884 coding downstream 40590 25090195 ~ 25095673 (+)
si:ch211-242e8.1 LOC107751619,LOC107569663,LOC107583802 coding downstream 49777 25099382 ~ 25103751 (+)
si:ch211-218c6.8 LOC107709518,LOC107686257 coding downstream 57510 25107115 ~ 25108935 (+)
chtf8 chtf8,LOC107569647,LOC107583916 coding downstream 73716 25123321 ~ 25124789 (+)
trhr2 trhr2,LOC107686265,LOC107738778,LOC107549620,LOC107740321,LOC107583797,LOC107672195 coding downstream 127327 25176932 ~ 25187744 (+)
G129125 NA non-coding upstream 17134 25013750 ~ 25016984 (+)
G129127 NA non-coding upstream 33188 25000730 ~ 25000930 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding upstream 177887 24839062 ~ 24856231 (+)
LOC122362654 NA non-coding upstream 297106 24735187 ~ 24737012 (+)
G129038 NA non-coding upstream 305139 24664451 ~ 24728979 (+)
G129135 NA non-coding downstream 13849 25063454 ~ 25141859 (+)
G129246 NA non-coding downstream 238538 25288143 ~ 25288537 (+)
G129262 NA non-coding downstream 299151 25348756 ~ 25349038 (+)
G129270 fam192a non-coding downstream 390443 25440048 ~ 25442441 (+)
G129360 NA non-coding downstream 612892 25662497 ~ 25663585 (+)
LOC122323037 NA other upstream 445781 24583845 ~ 24588337 (+)
G128858 NA other upstream 576558 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1297270 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2595439 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2622161 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 245138 25294743 ~ 25309740 (+)
mt2 NA other downstream 296787 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 871662 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 902725 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1179489 26229094 ~ 26332010 (+)

Expression


Co-expression Network