LOC122362840


Basic Information

Item Value
gene id LOC122362840
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20869875 ~ 20887115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006253167.1
ACAGCAGAAAAGTACAgtgagggaggaagaggaggacaaGAGTGAGATGATGATGGAAAAGTGTAGCTTTTGGAAATAATCAAATCTACAATGGGACCATTATTGGCTTAGGGTGCATCCTTTCTGAAGCATTGTTTGTGTAAGATGGACACAAACCTGGGGTCAACGCACATGCCATGTGGCGAATGTTTGAGCATCTACCCAGCCAAACAGACAGAAGTCTCGTCTCCGAACACAAGCAGCAGCAGGACAGAGTTTGgccttctctgtctctcactctgcCCTGCAGGCTACAACACAGACACACGGAGCAAGAatgaggacagagagagagagagagagagaagacaaacAGAGTGAAATGAGATTTAATGGAAGTGCATAATAtctacagagacagagagagagacagatgaaggAAAGAGAGAACAACCAATCAATGGCAAAGTGGTActtgaaggattttttttttcctagaaaGAGAGACAATATTggtaaaaaggaaaatgagatGGAAAGACCAAGGCCATTTTTGTCAGAtgacattatatacacacatttttttaatcatataaatattattaaataaataaatattgttattaaagcaagtaattacataaattaatcataataaatgattttttaaattattttttatttatcaatgttgtaaaaaaaaccaaTGTAAAATAGTAACAAagacaattattaatattagttgttattattattaatatataatacaacaaaatacTACTACTGCAAATAATAATCCACAAGGAAATGTGGTGCATAAACTGTCCGTAAGCTCCTGGAAAATGTGGCTTGGGACGAGACAAAGTCTTTGCACATCTCTGCAGCTGCTCTCCTGTTTTGTTCATTCACCTCTATTTTTATCAACAAAATCTTTTTCTTCTCATCGCTGTATCTGCATTACTTCCACCTCTGTTCCCAAACCTGCTCGAGAAATCGAGGGAGAGAGATGTTGCACAGAGCACTCAGCAGTTGAATCGATTCCGGCCTGATCTTTTTAGGTTATACATGTTTTGTGTGTTGCCTCATTATTTAACCAAAGCAGACCGGAGGCCAGCGATGATTCCAGCAGCAGTGCCCGGAGCAGCCTCATTTTCATCCATTCATACGACACGCTCATAACAGCGCTAGGAGAGGAGGCCTGCTGAAAACGCCTGCTGAACGGACTCGGAGATCAATAAACAACACTAGAGATGCTCTATGGCTTTATACTGTTGAATCTCAGATAAAAGAGAGATCTGAAGATGATGAGACCCGCGCTCAATATGCTTGAAGAAATAACTAAGTAAACTGATTGGTTTGGGAAGAGTTTGTTTTTCGCTCTTGTATAAGGACTGAGGAAGTCGGATTCGATTTACACCAAACGTGTAACATTTataagtaatattatttattctttgcaGTTTTTAGTGAAGATATTTGAGTGATATTTCTAATTATAATCGATACTTCTTCAGTTCCCTGTCGTGTCTTCACACTGAAGCTAATTGTGCTCCAAATGTTATGACATCTGGAATTGGGTGCGCTAGATCTTATTAAGGTTTGAAAAATTGCAAAGATTGCAAAAGGGGGTTGTCATAGCGATgtcacagagaaagagaaaatttttttaacattcttaaagggaaatttacaaaatacaaatgaagaacatttatttttaagaatgtatattaaaatcataacaaaatattataattgcatacatattatatatagagagagaattAAAGTTATTGTAATGCCAGAATGCAATactcttaaatgtaaaaaaggaaGAATCTGCTGACATCAGGAAGCAGAAGACATCAAAATTtgagaaatacttttttttgtaactaaaCCTTATATTTTTCTGACAGTTAGCTACAAGGCAATGAAGAAAGTTATTATTATGTACTAATCCAGCAACAAAGAATGTGTTCACATACAATATATAGTACGAAATCACCTGTTACTTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006253167.1 True 1999 lncRNA 0.36 3 20869875 20887115

Neighbor

gene id symbol gene type direction distance location
rabl2 rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941 coding upstream 198038 20666753 ~ 20671837 (+)
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding upstream 212052 20654532 ~ 20657823 (+)
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding upstream 216205 20648300 ~ 20653670 (+)
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding upstream 236239 20629743 ~ 20633636 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding upstream 251695 20609937 ~ 20618180 (+)
arsa arsa,LOC107710387,LOC107599918,LOC107560065 coding downstream 41400 20928515 ~ 20933433 (+)
chkb chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153 coding downstream 76013 20963128 ~ 20969701 (+)
LOC122362691 LOC107719968,LOC107671151,LOC101886608 coding downstream 82977 20970092 ~ 20972842 (+)
cpt1b cpt1b,LOC107686536,LOC107599889,LOC107671150,LOC107710383,LOC107559523 coding downstream 86400 20973515 ~ 20980699 (+)
impdh1a impdh1a,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC107671158,LOC108442450 coding downstream 249691 21136806 ~ 21154598 (+)
LOC122363025 NA non-coding upstream 222167 20641765 ~ 20647708 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding upstream 281012 20586051 ~ 20588863 (+)
G127860 NA non-coding upstream 297565 20562083 ~ 20572310 (+)
G127785 NA non-coding upstream 486117 20325330 ~ 20383758 (+)
G127800 NA non-coding upstream 494040 20373854 ~ 20375835 (+)
G127935 NA non-coding downstream 7662 20894777 ~ 20937442 (+)
G128148 NA non-coding downstream 193654 21080769 ~ 21081291 (+)
G128149 NA non-coding downstream 241438 21128553 ~ 21129033 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding downstream 274771 21161886 ~ 21162751 (+)
G128158 NA non-coding downstream 278157 21165272 ~ 21166073 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 228816 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 269356 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 313248 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 320518 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 776274 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1513829 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1547691 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2569985 23457100 ~ 23736848 (+)
G128858 NA other downstream 3562650 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3696730 24583845 ~ 24588337 (+)

Expression


Co-expression Network