rdh14b (rdh14b,LOC107549534,LOC107729080,LOC107695993,LOC107685777,LOC107712435,LOC107582098)


Basic Information

Item Value
gene id rdh14b
gene name rdh14b,LOC107549534,LOC107729080,LOC107695993,LOC107685777,LOC107712435,LOC107582098
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 6145840 ~ 6149228 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219237.1
GCACTAAAAGCCAAATATGCTTCGTTACATAATATAGTGATGCTGATAATAACGATTAAGCTCTAAGGTATACCGTGTAATCAACTAGTAGGCTGGAATAGTCGACCTCAAAAAtaggaaatgcattttaaaccataacaaagcagtgcattctgggtaatGTGGTCCGCCGTGCTCACGCGCACGCTGTCATTCCACACTCCGCATTCCTGCACCGATGTCTGCTGCGGTAATTTTAGCCGCTGTCCTCGGCGGCGGGGTTCTCTTCATCGCCCGGAGAATATTCTTCAGGCGGAAGGCGCTGAAACTGCTGAGCTACCCAGCGGGTCTGATGCGCGGAAAGACCGTGATAGTGACCGGGGCGAACAGCGGCATCGGGCGGGCGACGGCCGCGGAGCTGCTGAAGCTGCAGGCCCGTGTGATCATGGCCTGTCGGGACGGGCAGAGGGCCGAGGAGGCGGCCCAGGACATGAGGAATCAAGCCGGTCCGAATCAGGGAGAGCTCGTGATCAAACACTTGGACCTCGCGTCGCTCCGGTCTGTGCGCAGCTTCTGCGAGGAAGTTATCAGGGAGGAGCCGAGGATTGATGTTCTTATCAACAATGCTGGTCTCTACCAGTGTCCCTACAGTAGGACAGAAGAGGGCTATGAAATGCAGTTGGGAGTGAACCACCTGGGTCACTTCCTTCTGACAAATCTTCTGCTGGACCCTCTAAAGCAGTCGTCTCCCAGCCGTATCGTCGTGGTCTCCTCCAAACTCTACAAGTATGGCAGCATCAACTTCGAGGACTTGAACAGCGAACAGAATTACAACAAGGCTTTTTGCTACAGCCAGAGCAAGCTTGCCAACCTACTGTTTACTCGCGAGCTGGCCCGTAGGCTGAACGGTACCGGGGTAACCGTAAATGCTCTCACTCCGGGTATCGTAAGGACCAGATTGGGCCGGCACGTCAACATCCCCCTGCTGATCAAGCCTCTTTTCTTGCTGGTCTCTTGGTTGTTCTTCAAAAGCCCACTGGAGGGTGCTCAGACCCCACTGTACCTGGCATGCTCGTCTGAAGTTGAGGGTGTGTCTGGAAAATGCTTTGCTAATTGCGAAGAAGAACAATTGCTGTCTAAAGCCACCGATGACCATACTGCTAAACGGCTCTGGGACCTGAGTGAAAGCATGGTGGGGCTTAGGAGGTGAAGGGAAGAAGCAGAGCCACTCTTCACAAATTTGGCGATTGCAAACCTCGAACCTCAGTGGATTGGATTTTCGGGGAGTGCTTTTGGCCAAGTACCTGAGGGACTTACTGGATAAGGGAGAGGAAATTAAAATGTCCATCTGTTCCCTGTATCTTTGCTGCAGTGTTTTCAGAGATGGCCTCAGGCTTGTGACTCACTCTTCTCTGTGAATGAGAGCCTGAAAGTATAGAGTCCGACATATCCCTTGAATACAAATGACAGAAGCAACGTGCCCAAGAAACATATGGCTCAGAGCTAACATGAATATAGAATAAGACGTACACCACTGTATATTTCTCGATGTACATTAACTGGTGATTTGTGACCAAGTTATTACAATACGTCAAATGTTGTTCAGCATAATTTGACAGACTTATTCTTCTATGAAGTGAACTAGTCATACTTTAGCCTCCCAGAATATCATCTTCTCATAACCTGGCAACTCCCACCCTGTGACTCATTTCGAGATGTATTTGCAAATGTTCAAATGACATCCCAGTGTCCAAATCAAATCACTAAATCAAAAAGGGAACACGTAGGTTGTGGCTCTGCAGATAGTGTGGTGTCACTACTCAAACAAAAAAGTGAATCAGAGTAAAATTCCATTACATCATCTATATACCTCTGCGCATTAGCTATTGTAAGAAAATTTCATTCGCGGCGGAGCTGTAGGGATTTTACTGGCTACTGTCCTTAATCACACGCACAAACATGAAATGTTCTGAGTGTAAATGCTGCGCTTCTGTTATTCTGTAAAGACTGAATAAAGTGAATGCTGGAAAGAAA

Function

symbol description
rdh14b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RDH14 (retinol dehydrogenase 14).

NR:

description
retinol dehydrogenase 14-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11162 RDH14; retinol dehydrogenase 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219237.1 True 2013 mRNA 0.48 2 6145840 6149228

Neighbor

gene id symbol gene type direction distance location
syt14b syt14b,LOC107685772,LOC107712432,LOC107695988,LOC107549502 coding downstream 40324 6090684 ~ 6105516 (-)
ylpm1 ylpm1,LOC107729078,LOC107685771,LOC107695985 coding downstream 69887 6054521 ~ 6075953 (-)
grcc10 grcc10,cssa15h12orf57,clg18h12orf57,c7h12orf57,LOC107685770,LOC107695984,LOC105901913,LOC107729086,LOC102199733 coding downstream 99648 6043364 ~ 6046192 (-)
LOC122324731 LOC107685784,LOC108426288,LOC102776492,LOC101474482 coding downstream 114832 5934497 ~ 6031008 (-)
rhag rhag,LOC107751290,LOC107685767,LOC107562311,LOC107549521,LOC107712421,LOC107695981 coding downstream 241605 5893432 ~ 5904235 (-)
crip2l zgc:101840,LOC107695994,LOC107582101,LOC107549535,LOC107685785,LOC107729083,LOC102218464 coding upstream 222 6149450 ~ 6158609 (-)
zfp36l1b zfp36l1,zfp36l1b,LOC107729081,LOC107664815,LOC107695995,LOC107712436 coding upstream 44206 6193434 ~ 6198155 (-)
nid2b LOC107712413,LOC107549538,LOC107549503 coding upstream 69283 6218511 ~ 6232667 (-)
cgrrf1 cgrrf1,LOC107740293,LOC107664817,LOC107712438,LOC107582104 coding upstream 105487 6254715 ~ 6257447 (-)
gjd2b gjd2b,LOC107740303,LOC107582173,LOC107549543,LOC105892965,LOC107582146,LOC107712441 coding upstream 163102 6312330 ~ 6315814 (-)
G136398 LOC107685776,LOC107712433,LOC107582143 non-coding downstream 179 6128498 ~ 6145661 (-)
G136388 LOC107685791,LOC107582172,LOC107712426 non-coding downstream 95207 6048968 ~ 6050633 (-)
G136368 NA non-coding downstream 285217 5859953 ~ 5860623 (-)
G136356 NA non-coding downstream 444365 5701181 ~ 5701475 (-)
G136350 LOC107746236,LOC107672706,LOC107741192,LOC107663224,LOC107557109 non-coding downstream 492915 5652299 ~ 5652925 (-)
G136416 NA non-coding upstream 55862 6205090 ~ 6205438 (-)
G136440 NA non-coding upstream 97035 6246263 ~ 6246891 (-)
G136506 NA non-coding upstream 234204 6383432 ~ 6398110 (-)
G136689 LOC107581525,LOC107742114,LOC107664807,LOC107658183,LOC107721806,LOC107597854,LOC107737069 non-coding upstream 977985 7127213 ~ 7130585 (-)
LOC122324389 NA non-coding upstream 984520 7133748 ~ 7139291 (-)
zpax2 NA other downstream 214718 5924066 ~ 5931122 (-)
G136357 NA other downstream 441929 5701679 ~ 5703911 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other downstream 547174 5591338 ~ 5598666 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other downstream 785771 5161206 ~ 5360069 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other downstream 1116273 5024806 ~ 5029567 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other upstream 125526 6274754 ~ 6302976 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other upstream 261734 6410962 ~ 6414013 (-)
LOC122324366 LOC107549545,LOC107582175,LOC108413331,LOC105929849 other upstream 283534 6432762 ~ 6451499 (-)
G136688 NA other upstream 976520 7125748 ~ 7228963 (-)
G136707 NA other upstream 1147633 7296861 ~ 7305724 (-)

Expression


Co-expression Network