tm6sf2b (tm6sf2,LOC107599483,LOC107719666)


Basic Information

Item Value
gene id tm6sf2b
gene name tm6sf2,LOC107599483,LOC107719666
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9602450 ~ 9612501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223913.1
TTATCTTCTGCGGAGCCTTGGGTTGAATAACCAACTCGATAGCAAACATCATGGTACTGGagatatgtgtttttacattttccctGACGGCTCTTGGCGTCCTTTACACTATGAACAATGTTCCAGCATTTCAAGAGCCAGTGGTTATTCTGGAAATTGGGATGGCTGTTCTTGTGGCGGTGTTCCTCCTGGTCTACCTCGCTACTCGCTATAATCCTCCGAAAGATCCTTTGTTCTATGTTTTTGCAGAGTTTTCCTTCACGTGTGTGATTGACTTCACGAGCGCTCTAGAATACGATGGCTTCACCTCAGGGTTCATGGAGTTCTACCAGAAAACGGGGGAGCCGTATCTCGGCACGCCGTATGCTATCATGATGTGCTACTGGGATGGTATAGTGCACTTCATTCTCTACCTGATGCTAATACACCGCATGTCAAACAGGCAACAATACCGCACATTGGGTCTTTTCTGGGCTGGATCACTGTGTGCCAACATGATTGTGTTTGTACCTGGAATCGTGGTTGGTAAATATGGCTCTGAGATCCGTCCTGCCTTTTGGCTCAACATGCCGTTTCTGTTGGTGCCCATATGGGGAGCAGTTTCTTTGTTCTCCAGGCCAAGGGATATGCCTCTTGTGGGAGCATCCAAGGCTGAACGTGAGCAGAAAAAAGCCTTGATCTGGCGCCCCTTGGATCTTCTTTTTGTGGTTTATCTAGTGGCTGCCATGGCATTCACTATCTTTAGAGGACTGGCCGTTCTTGATTGCCCGTTAGAAATCCTGAACAGATATGTGACTGAATATGAGCCATATCTGAAGGATCCCGTGGGCTTCCCAAAAGTTATGATGTTGCTGCTCCTGTTCCACGCGCTTCCAGTGCTGGGTGCATTTGCATATGGGCTTTGCACACCTGGCTGCACTTGGATGCTTGATTGGACGGTATATTTTGCAGGTGCCATCTTACAGTGCCAGTGGTCTCATATTGGAGCATCGCTGCACCCACGCACCGCAGAAATGTACAGGATTCCCATCACGACCCTGGCGCCCGTCCTCCTCCTCAACCTGCTGTATGCGGCCATACCTGTCCTGCTCGCCCTGCGCTGCAAACGAGAGCCGGACTACTTCCTTTCCATCGCACCTGTGGGCCAAACTAACAATGAGAAGAAATTAAGTTAAATcgactgagaaaaacaaaaacattgaccTTGAAGTATTGAAGttccgtcatcatttacttgtgCTTCAGAAAGAGTGCATTTCAAATTGCGTTTATTTGGCACAGCTGTGTTCCAGTGGGTTCTAGTTAATTTGGTAATCACGTAGGTTACAGGACCTTGCTTTTTGGAAATGTCTTGATTGTGTCAGTTGCCAGAGCTACGGCTGTTACTGAATTCCTCATGAGAAAAACAACTCTAAATTGCATGAAGCTGAGATCATTAAAGCATGGCTTGTTCTACCTGTCTTGACACAACAAGACCTTTAACGCCACCGTTTATAAGCCTTCCGTCTTTCACTGTAAAATCTCATGCAGTGTATTTTTCTAGTTCTATCCATCTGCTCCTCACAAATTTCACAGTTAGCTACATCTTAAATGTAACACATGCCAGAACTTTCTCCTGAATAATTGACTGGTCTCAtagg

Function

symbol description
tm6sf2 Acts upstream of or within lipid homeostasis and regulation of response to endoplasmic reticulum stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Is expressed in intestine; liver; and posterior intestine. Used to study fatty liver disease. Orthologous to several human genes including TM6SF2 (transmembrane 6 superfamily member 2).

NR:

description
PREDICTED: transmembrane 6 superfamily member 2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223913.1 True 1640 mRNA 0.46 10 9602450 9612501

Neighbor

gene id symbol gene type direction distance location
polr2eb polr2e,polr2eb,LOC107669821,LOC107599482 coding upstream 96159 9503550 ~ 9506291 (+)
hnrnpm hnrnpm,LOC107599446,LOC107728570,LOC107592680 coding upstream 129948 9465508 ~ 9472502 (+)
rab11ba rab11b,LOC107599444,LOC107592688,LOC107655249,LOC108429533,LOC102310619 coding upstream 148103 9449289 ~ 9454347 (+)
rabgap1l rabgap1l,LOC107728556,LOC107715121,LOC106613570,LOC107592725,LOC106574055,LOC107655181,LOC107669795 coding upstream 242135 9283786 ~ 9360315 (+)
gpr52 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding upstream 285443 9309806 ~ 9317007 (+)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665,LOC107687742,LOC107554801 coding downstream 1378 9613879 ~ 9619115 (+)
LOC122327676 nr2c2ap,LOC107687739,LOC107728548,LOC107554809,LOC107719618,LOC107599487 coding downstream 272011 9884512 ~ 9886217 (+)
yjefn3 yjefn3,LOC107687717,LOC107655232,LOC107719609,LOC108429551,LOC107554805,LOC103041169,LOC108271278 coding downstream 383978 9996479 ~ 10028474 (+)
cilp2 cilp2,LOC107728576,LOC107687716,LOC107655229,LOC107719612,LOC107599460 coding downstream 418369 10030870 ~ 10044212 (+)
si:ch211-212d10.1 NA coding downstream 458315 10070816 ~ 10072852 (+)
G151210 LOC107669820,LOC107592722,LOC107655244,LOC107599472 non-coding upstream 86882 9514740 ~ 9515568 (+)
G151194 NA non-coding upstream 127419 9472986 ~ 9475031 (+)
G151178 NA non-coding upstream 237128 9360428 ~ 9365322 (+)
G151163 NA non-coding upstream 319446 9277690 ~ 9283004 (+)
G150983 NA non-coding upstream 455062 9145211 ~ 9147388 (+)
G151308 NA non-coding downstream 149653 9762154 ~ 9762419 (+)
G151333 NA non-coding downstream 282545 9895046 ~ 9895327 (+)
G151334 NA non-coding downstream 284080 9896581 ~ 9896839 (+)
G151337 cirbpb,cirbp,LOC108271114 non-coding downstream 441417 10053918 ~ 10080145 (+)
G151358 NA non-coding downstream 469281 10081782 ~ 10082620 (+)
G151232 NA other upstream 22299 9577679 ~ 9580151 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other upstream 72285 9454838 ~ 9530165 (+)
G150965 NA other upstream 613759 8988186 ~ 8988691 (+)
G150946 NA other upstream 680483 8921698 ~ 8921967 (+)
G150945 NA other upstream 682670 8919279 ~ 8919780 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 275662 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 282940 9895441 ~ 9910793 (+)
LOC122328159 NA other downstream 311046 9923547 ~ 9963634 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other downstream 358121 9970622 ~ 9993441 (+)
G151620 NA other downstream 1193551 10806052 ~ 10837365 (+)

Expression


Co-expression Network