G18628 (hbaa1,si:ch211-5k11.8,LOC107682494,LOC107587926)


Basic Information

Item Value
gene id G18628
gene name hbaa1,si:ch211-5k11.8,LOC107682494,LOC107587926
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9785249 ~ 9786124 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27798
CTCGTTTAATTCTGTGCCTTTTTATTGAGAAATGTTATTCAGACATCACGCTTGAGCTGGTTCAGGGCTGCCGCACAGTGTCGCGCATGGATGCCCGCCGGACGTTTAGCGGTACCTCTCGGCGAGAGCCAGGGCCAAGTTCTGAAAAAACTTGTCGACTGACACGTGAACCTCTGGGGTGAAGTCTCCGGGGAAGAGCATGCCGATGACCACGATGACATTGTGTGAGAGACCTTGAAGTTGGCCGGGTCCACACGCAGCTTGAAAGCGTGAAGTTCGCTCAGGGGGGCCAGGCCTCCCACAAGGTCGTCTATTTTTGAAATGGCTTCGCCGACTGCGCCCATGATAACCTTGCCGTGCTTCTTCACGGGAGCGGACCCAGGACTCAGGTCAGCCCAGTGAGAGAAGTAGGTCTTGGTCTGAGGGTAGACGGTCAGCATcctgCGAGGGCTTCAGCGCCGATTTCATCGGCCTTGGAGCTGATCTTAGCCCACAGGGCCTTCACAGCAGCCTTGTCCTTATCAGAGAGACTCATTGCTGCGTCTTCTTTTTCTCAAGTTAGATTGTCTTCAGAAAAAGATGTTGACGAAAATGGGATTCTGTCccactttttatataaaacgaATAAAGGGCACA
>TU27799
CTCGTTTAATTCTGTGCCTTTTTATTGAGAAATGTTATTCAGACATCACGCTTGAGCTGGTTCAGGGCTGCCGCACAGTGTCGCGCATGGATGCCCGCCGGACGTTTAGCGGTACCTCTCGGCGAGAGCCAGGGCCAAGTTCTGAAAAAACTTGTCGACTGACACGTGAACCTCTGGGGTGAAGTCTCCGGGGAAGAGCATGCCGATGACCACGATGACATTGTGTGAGAACCTTGAAGTTGGCCGGGTCCACACGCAGCTTGAAAGCGTGAAGTTCGCTCAGGGGGGCCAGGCCTCCCACAAGGTCGTCTATTTTTGAAATGGCTTCGCCGACTGCGCCCATGATAACCTTGCCGTGCTTCTTCACGGGAGCGGACCCAGGACTCAGGTCAGCCCAGTGAGAGAAGTAGGTCTTGGTCTGAGGGTAGACGGTCAGCATcTGCCGAGGGCTTCAGCGCCGATTTCATCGGCCTTGGAGCTGATCTTAGCCCACAGGGCCTTCACAGCAGCCTTGTCCTTATCAGAGAGACTCATTGCTGCGTCTTCTTTTTCTCAAGTTAGATTGTCTTCAGAAAAAGATGTTGACGAAAATGGGATTCTGTCccactttttatataaaacgaATAAAGGGCACA
>TU27800
CTCGTTTAATTCTGTGCCTTTTTATTGAGAAATGTTATTCAGACATCACGCTTGAGCTGGTTCAGGGCTGCCGCACAGTGTCGCGCATGGATGCCCGCCGGACGTTTAGCGGTACCTCTCGGCGAGAGCCAGGGCCAAGTTCTGAAAAAACTTGTCGACTGACACGTGAACCTCTGGGGTGAAGTCTCCGGGGAAGAGCATGCCGATGACCACGATGACATTGTGTGAGAGGATCTAGAGTTGGCCGGGTCCACACGCAGCTTGAAAGCGTGAAGTTCGCTCAGGGGGGCCAGGCCTCCCACAAGGTCGTCTATTTTTGAAATGGCTTCGCCGACTGCGCCCATGATAACCTTGCCGTGCTTCTTCACGGGAGCGGACCCAGGACTCAGGTCAGCCCAGTGAGAGAAGTAGGTCTTGGTCTGAGGGTAGACGGTCAGCATcctgaaagacaaaaacacaacaaaggcGTAAAACATTATTCTTTACGATACTCCAGTAAATCAAAGAATGCAAAgcaattttacaattttctgGGTGAGCTTAAATGGACAGACAGCGATTCGGTATTACCTGCCGAGGGCTTCAGCGCCGATTTCATCGGCCTTGGAGCTGATCTTAGCCCACAGGGCCTTCACAGCAGCCTTGTCCTTATCAGAGAGACTCATTGCTGCGTCTTCTTTTTCTCAAGTTAGATTGTCTTCAGAAAAAGATGTTGACGAAAATGGGATTCTGTCccactttttatataaaacgaATAAAGGGCACA

Function

symbol description
hbaa1 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Acts upstream of or within response to hypoxia. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Is expressed in eye; hematopoietic system; presumptive blood; and vasculature. Human ortholog(s) of this gene implicated in Heinz body anemia; alpha thalassemia; familial erythrocytosis 7; and hemoglobin H disease. Orthologous to several human genes including HBZ (hemoglobin subunit zeta).
si:ch211-5k11.8 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to act upstream of or within oxygen transport. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Orthologous to human HBZ (hemoglobin subunit zeta).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27798 False 636 lncRNA 0.36 3 9785249 9786124
TU27799 False 635 lncRNA 0.52 3 9785249 9786124
TU27800 True 766 lncRNA 0.50 2 9785249 9786124

Neighbor

gene id symbol gene type direction distance location
hbba1 ba2,ba1 coding downstream 824 9783631 ~ 9784425 (-)
hbba2 zgc:92880,LOC107754031,LOC107711188,LOC107587925,LOC107596824,LOC107672461 coding downstream 7816 9776674 ~ 9777433 (-)
nprl3 LOC107711278,LOC107596811,LOC107754028,LOC107670498,LOC107672508 coding downstream 10974 9761330 ~ 9774275 (-)
rhbdf1a rhbdf1a,LOC107587928,LOC107711277,LOC107596807,LOC107672493,LOC107754036,LOC107670513 coding downstream 45092 9698064 ~ 9740157 (-)
ubald1b ubald1b,LOC107754052,LOC107672511,LOC107670507,LOC107596822,LOC107587929 coding downstream 106298 9675218 ~ 9678951 (-)
hbae1.1 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 5418 9791542 ~ 9792514 (-)
LOC122331237 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 8581 9794705 ~ 9795658 (-)
LOC122341747 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 11875 9797999 ~ 9798799 (-)
LOC122341755 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 15157 9801281 ~ 9802091 (-)
hbae3 hbae3,LOC107674645,LOC107588003,LOC107703327 coding upstream 21928 9808052 ~ 9809328 (-)
G18623 NA non-coding downstream 31727 9753235 ~ 9753522 (-)
G18608 NA non-coding downstream 138683 9646313 ~ 9646566 (-)
G18602 NA non-coding downstream 193958 9589921 ~ 9591291 (-)
G18599 NA non-coding downstream 213444 9571600 ~ 9571805 (-)
LOC122342127 NA non-coding downstream 251462 9512446 ~ 9533787 (-)
G18634 LOC107596828,LOC107588005,LOC107596825,LOC107703325,LOC107587921,LOC108440249,LOC108440213 non-coding upstream 3492 9789616 ~ 9793185 (-)
G18638 LOC107703356,LOC107674672,LOC107754020,LOC107596819 non-coding upstream 115407 9901531 ~ 9908617 (-)
G18717 NA non-coding upstream 615709 10401833 ~ 10402211 (-)
G18745 NA non-coding upstream 788043 10574167 ~ 10579140 (-)
G18771 NA non-coding upstream 891333 10677457 ~ 10678580 (-)
G18433 LOC107670519,LOC107563315 other downstream 322344 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 647160 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 777806 8992714 ~ 9007443 (-)
fmc1 NA other downstream 1386421 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 1566194 8218902 ~ 8219055 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 207709 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 608190 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 1225812 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 1625861 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 1908148 11694272 ~ 11714719 (-)

Expression


Co-expression Network