LOC122329895


Basic Information

Item Value
gene id LOC122329895
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 289442 ~ 293412 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226555.1
TGAAACATCTAGCTCTGTAGCGTCACGCTGCAGGGAGTTGCTTGGAATGTAATATCAAGTCCAACCAGTTTTGGTTGAGTTATTAATACACAACATTATAGATAGAGCACACATTTTATCAGCTGCAACACATTTAGTTTCTTGCCTTCTGAAGTGGTTCTGTCTACAGCATTTACGTTTGTGTGAGAATGGCTGATTGGAGTGGATCATCCAGAGAACCAGGGGGACATCAGTTAAGAAGAAGAGGAAGTATGACTGAACCTCCAAGCATGTTTGGGATTAAAAACGACCTGAGAGTAGTGCTCCTGGGGTCACACGCAGATGTTAAAGCCTCCTGTGGAAACACAATCCTGGGACGAAAGGCCTTTATGAAGTCCTCCCTGAACCTGCTTGAGAGGCATGATGGGATTGTTTTGAAGAGACGTGTGGTGGTCATCAACACCCCCGATCTGCTCAACCTCGTTCTCTCTCCTGAAGAACAAGATGTGAAGAAATTGTTCAATCTGTCCGGTCCTGGTCCTCATGCTCTTCTTCTGGTCCTGAAGCCTCAGTCATTTACAGATCTAGAAAAAGAAGCCCTCAAGCACATTAACATCATTTTTGGTGCAGGCGCATCAGAGTACGTGATCGTCGTCTTCATGCACGAGAAGTACATCAGCGTCAGAGACTCTGAGTCTCTCCTGCAGACCTGCAGACGACCACACTGTCATCTACAGAAGAATGGAGACCAGTCACAGGTGCAGAATCTTCTGGAGAACATTGAGAAAATGGTGGAGCAAAACGGTGGCCATCACTTGAAGATTTCTAAAGACCCCGGGACAAACAAAGCACCTCTAGAGCCCTTACAGAGGCCAGAAATACATGGAAATTTGAAGAGAGCAAAATCCACTCGTGCGAAAAAGAACTTGGAGTGTGTGAGGATCGTTCTGATTGGAAAAACCGGAGCTGGAAAAAGTGCTTCAGGCAACACCATCCTGGGAAGCAAGGTGTTCGAATCAAGGGCCGCGATGAGATCTGTGACCAAGACCTGCCATCGAGAGAGAGGGACGGTCTGCGGTCGGCCCGTGACTGTGGTGGACACACCGGGACTCTTCGACAAAAGCCTCAGTAATGAAGAGATCCAGCAGGAGATCATGAGATGCATTGATCTGTCGGCTCCTGGACCTCATGTGTTTCTGCTGGTCATCGCTGTCGGCCCGATCACacgagaagagagagaaaccgTTCAGCTCATCAAGACGGCCTTCGGACAGAAAGCAGAGGCCTACACTATGGTGCTCTTCACACGAGGAGACAGTCTCAAAGATCAGAGCATTGAAGACTGCATTAAAGAAGATCAAGAAATCCAACAACTGATCCGTGCCTGTGGAGGAAGATTTCACGTTCTCAGCAACGAACAGAAAGACCCCGCTCAGGTGGTGAGTCTGTTAAACAAGATCAATAAGATGATGTGGAGTAATAAACCCAGTTTCTACACTGACAAAATGATTCAGGAGCTGCTTCTGGAAAGAGAGGAGGAGGCCAAACGGGAGATAGAGGCTATTAAAGTCAAATATGAGATTGAACTCAAAGATATTCAAAACCAATTAGAGGAGGAAAAAGCTAAACTGAAGGTAAGCGATCTTCTGTTTAATGAAAATTTGCAGAGCAAAATGTTGAGAAAGTATGAGGCGGGAACAACGAAAGACAGCGGAGTGACAACAGATACAGAACAAACGCAGgagaaaactaaaaaacactCTGAGAAGGAGAAGAGCGATTACGAGAAAGAGCCAATGAATAAGCAGAAAAATCAGCTTTTGGGAACAACAGGCGTTGACAGACAAAGAACAGAAACCGTAGAAGaagcaagagaaagagaatcGGACCAAGAGAAAAAGCAACACCATCAAACATTTCTACGTTTCGGAGAACTGaggaaaagtgcaaaaaaaagggGGCAAAAAAGTGAAACGAGGATGAAAGGATATGAAGCAGAATGTgagaaggagaaaaaagaaaacccgACATATAGCGTATATACAGATCAACAAGATACTTGTATGAACCCAGGAGACCAGACTGACTCgatgaaaaagacagaaaacatgGACTTGCCTCAAAAGAATGAAGGCCAGACAGACACGGACAAAGAGAAACTCCTGCTTCAGAACATCGAGGAACTAAATCACAAGATGGAGGTGCTCTCGTTGCAGTACAGAACATTTACAGAAAGACATTACGAAGAActtaagaaaaatgaaaaagttggcaccaagaaaaggaaaaaaaatccttgtGCGGTTCACTAACAGACGCCTGCAtgatatatgtattaataactACATTTACTGCATCCGCTGTGGCCTTTTCCAGATCTATATGTAAGGGAAGGGCTGATGTTTAAGATTGAAGGGCGCAAAAGTAAACAATTATACATAAAACTTTGATCTgagttgaaa

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226555.1 True 2441 mRNA 0.44 5 289442 293412

Neighbor

gene id symbol gene type direction distance location
LOC122331655 NA coding upstream 11210 266330 ~ 278232 (+)
LOC122330203 NA coding upstream 21187 245228 ~ 268255 (+)
LOC122329952 NA coding upstream 70328 215085 ~ 219114 (+)
LOC122331645 LOC107736793 coding upstream 275286 7079 ~ 14156 (+)
LOC122331907 NA coding downstream 157059 450471 ~ 452874 (+)
LOC122332242 NA coding downstream 275912 569324 ~ 571953 (+)
LOC122329695 LOC107574151,LOC107661760,LOC107705958,LOC107574149,LOC107712638,LOC107575271 coding downstream 278526 571938 ~ 610361 (+)
LOC122332267 NA coding downstream 345416 638828 ~ 639299 (+)
LOC122329668 NA coding downstream 406303 699715 ~ 711401 (+)
G15459 NA non-coding upstream 81665 10442 ~ 207777 (+)
G15520 NA non-coding downstream 27943 321355 ~ 354219 (+)
G15524 NA non-coding downstream 58552 351964 ~ 353083 (+)
G15527 NA non-coding downstream 68507 361919 ~ 367951 (+)
G15507 NA non-coding downstream 128123 421535 ~ 422898 (+)
LOC122330779 NA non-coding downstream 161354 454766 ~ 456666 (+)
G15563 NA other downstream 260286 553698 ~ 557081 (+)
LOC122330407 NA other downstream 331952 625364 ~ 636239 (+)
LOC122330463 NA other downstream 461018 754430 ~ 775534 (+)
LOC122330135 NA other downstream 712571 1005983 ~ 1009431 (+)
LOC122330066 NA other downstream 753600 1047012 ~ 1051151 (+)

Expression


Co-expression Network