LOC122330304 (LOC107561208,LOC107727047,LOC107679470)


Basic Information

Item Value
gene id LOC122330304
gene name LOC107561208,LOC107727047,LOC107679470
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1176232 ~ 1179341 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043227216.1
atatatatatatatatatatatatataattttttctgtaCAAATCTATTATGAAGATAAAGATTTATGTCTGTTTGTATATCGTTTTGTTAAATGAGTAAATAcgttttactgtaattattaccgcatgtttatttaataattaaaaaaaaaattatttaccaGAGTTGTAAACCAAATGCACTTGAGTGATTACAGCAGGTCCCTGTTTCCATGCAGAGATCTTCTTGATTTCACTTCTTTCTGGGTGAACGAGAGCTCGGTGTGTCTGTCTCTTTAAGTCTCGGTCGTGAGTGAAAACATGGCGGAGGAGGAACGCGAGAGTTCAGCTGCTGGAGCTTCGGCTGAGGTCCGGATGGTTCTGCTGGGTCAGACGGGTTCAGGCCGGAGTTCATCTGGAAACACGATTCTGGCTCGGTCCGCTTTCTGGGCTGACGCGTCGCCCCTGTCGGTCACCAGCCGCTGCCAGCGGTCGGGGGGCGTGGCGGAGGGGCGGAGCCTGCGGCTGATCGACACCCCGGGCTTCTTCCACACCCGTCTGAGCCCGGAGGAGGTGCGCGCGGAGCTGAGCCGGTGCGTGGAGCTGAGCGCGCCCGGGCCGCACGTGTTCCTGCTGGCCCTGCGCGCCGGGCGCGTGACGCGCGAGAGCCGCGCCGCCCTGGACTGGGTCACCGCCGCGTTCGGGCCCCAGGCGCTGCGCTTCACCTTAGTCCTGATCACCTGCGGCGACGCGCTCGGAGCGAAACCCGCGGGCGACTTCTTGAAGGAGAGCGAGGAGCTGTGGGAGTTCGTGTGCGGCTGCGCGGGCGGCTATCACGTGTTCGACAACACTAAAGGTGTGGAGGAGAGGTCGCAGGTCACCGAGCTGCTGCAGAAGATCGATCTGCTGCTGGAGCGTAACGCGGGAGAGCACTACACCGCCGACATGCTGCTGCGGGCGGACACCGCTGTGCGCCACATGCAGAGGAGGATCCTGGGAGACGGCCAGGAGGAGGACGGGGAGGCCAGGGAGAGGGCGGAGCGTCTGTTCTGGTACGAGCTGCTGAGCGCCGTGGGCCGCGGCGCCGTGGAAGCGTCCGGTGTGATGGAGAAGGGCAAGGGCAAGGGCAAGAAGGTCAGAGCCGTGCAGAGGGTGGCGGCCATCGCCTCCACGCCGCTGTCAATCACAACCACTGCTAAAGTGATGGGCGGAGCCGTGAGAGAGGGAACCAAAGTCCTGTTGAAACACAAGAAGACGCTCCTgcgctgaaacacacacacacacacacacacacacttcagaaacCTTGAgcaatactgtataaataagcagataaacacacaTCATCACTTCCTGTAGATGTGATAATGTTTGCACTGCGATGACAATGCATGAATCTCATTTTCacgtttattttttgtgatatatGTAGTAGAGCACTTTCAAAGAATACATatttaaagctgtatttatagttattgtttaattatcatatatatatatatatatgttggcgatttatgcattttttgtagAAAGGATTAGAACGCGAATGATTTTGATTGTGCTAAAATCTTCACACGAAATCTGTTTTCTAGTTACGACTGCATGATGTCTGTTTAATCCTCACGAACGTCTGATTCATCTATTTAATGAATACAGAATCATCAAATAAAGAGCCGTGACCCAC
>XM_043227223.1
GGAAAGAAAAGTCTCGGTCAAATGATCCTGATAAAGAGAGTCGAAGGACAGTTAAAGGGACAGGACTTTCTTTCAGCTTCATCCTGTCATCTATCTGCTCCTGCTTTTATTTGTCACTCTCTGCAGAAATGTTCATTCGGGTTCTTGTCATGGAAACGTCCAGAAATGATAGagatgcaatataaatattttcttaattttttatattcgtcagataaattattaaatgtaacgTTTGGcatgataaaataaaaccaatttgACAATTTGtctatttactttttcattgcatttaatgtcgtttttatttctttattattatttctttattatttactttattagtatttaatCTGAATGACTATACATTTCTCAGTAGATcaatcataaaacacacacacacacacacaactttctATTTTGGCTGCGATTAATACATTTCATACcctttaaattgcttttttatttctattaattacTGTATGGTGGCCGTACAGGATTAGAAAGCGAACCAGTCCGGATCTGTTGGTACTAGAAAGCTGTCTTTATCAACTCAGGCTTGATCTTGAGGAGCTTCGGCTGAGGTCCGGATGGTTCTGCTGGGTCAGACGGGTTCAGGCCGGAGTTCATCTGGAAACACGATTCTGGCTCGGTCCGCTTTCTGGGCTGACGCGTCGCCCCTGTCGGTCACCAGCCGCTGCCAGCGGTCGGGGGGCGTGGCGGAGGGGCGGAGCCTGCGGCTGATCGACACCCCGGGCTTCTTCCACACCCGTCTGAGCCCGGAGGAGGTGCGCGCGGAGCTGAGCCGGTGCGTGGAGCTGAGCGCGCCCGGGCCGCACGTGTTCCTGCTGGCCCTGCGCGCCGGGCGCGTGACGCGCGAGAGCCGCGCCGCCCTGGACTGGGTCACCGCCGCGTTCGGGCCCCAGGCGCTGCGCTTCACCTTAGTCCTGATCACCTGCGGCGACGCGCTCGGAGCGAAACCCGCGGGCGACTTCTTGAAGGAGAGCGAGGAGCTGTGGGAGTTCGTGTGCGGCTGCGCGGGCGGCTATCACGTGTTCGACAACACTAAAGGTGTGGAGGAGAGGTCGCAGGTCACCGAGCTGCTGCAGAAGATCGATCTGCTGCTGGAGCGTAACGCGGGAGAGCACTACACCGCCGACATGCTGCTGCGGGCGGACACCGCTGTGCGCCACATGCAGAGGAGGATCCTGGGAGACGGCCAGGAGGAGGACGGGGAGGCCAGGGAGAGGGCGGAGCGTCTGTTCTGGTACGAGCTGCTGAGCGCCGTGGGCCGCGGCGCCGTGGAAGCGTCCGGTGTGATGGAGAAGGGCAAGGGCAAGGGCAAGAAGGTCAGAGCCGTGCAGAGGGTGGCGGCCATCGCCTCCACGCCGCTGTCAATCACAACCACTGCTAAAGTGATGGGCGGAGCCGTGAGAGAGGGAACCAAAGTCCTGTTGAAACACAAGAAGACGCTCCTgcgctgaaacacacacacacacacacacacacacttcagaaacCTTGAgcaatactgtataaataagcagataaacacacaTCATCACTTCCTGTAGATGTGATAATGTTTGCACTGCGATGACAATGCATGAATCTCATTTTCacgtttattttttgtgatatatGTAGTAGAGCACTTTCAAAGAATACATatttaaagctgtatttatagttattgtttaattatcatatatatatatatatatgttggcgatttatgcattttttgtagAAAGGATTAGAACGCGAATGATTTTGATTGTGCTAAAATCTTCACACGAAATCTGTTTTCTAGTTACGACTGCATGATGTCTGTTTAATCCTCACGAACGTCTGATTCATCTATTTAATGAATACAGAATCATCAAATAAAGAGCCGTGACCCAC

Function

NR:

description
PREDICTED: GTPase IMAP family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043227216.1 False 1669 mRNA 0.52 3 1176232 1179341
XM_043227223.1 True 1905 mRNA 0.49 3 1176572 1179341

Neighbor

gene id symbol gene type direction distance location
LOC122329844 LOC107563756,LOC107731666 coding upstream 161 1160237 ~ 1176071 (+)
LOC122330224 NA coding upstream 18793 1154623 ~ 1157439 (+)
LOC122330518 NA coding upstream 71053 1102861 ~ 1105179 (+)
LOC122330159 NA coding upstream 74132 1090492 ~ 1102100 (+)
LOC122329984 NA coding upstream 86599 1085289 ~ 1089633 (+)
kcnj4 kcnj4,LOC107711802,LOC107679476,LOC107727044 coding downstream 8677 1188018 ~ 1198038 (+)
sox10 sox10,LOC107674484,LOC107711804,LOC107563722,LOC107727045,LOC107679477 coding downstream 38180 1217521 ~ 1224917 (+)
LOC122329817 LOC100537134 coding downstream 50660 1230001 ~ 1234904 (+)
LOC122332730 NA coding downstream 193191 1372532 ~ 1374290 (+)
LOC122329966 NA coding downstream 197108 1376449 ~ 1380026 (+)
G15911 NA non-coding upstream 23004 1152825 ~ 1153228 (+)
G15886 NA non-coding upstream 42440 1120640 ~ 1133792 (+)
G15887 NA non-coding upstream 44757 1129892 ~ 1131475 (+)
G15889 NA non-coding upstream 52932 1121340 ~ 1123300 (+)
G15883 NA non-coding upstream 58566 1117223 ~ 1117666 (+)
G15925 NA non-coding downstream 33984 1213325 ~ 1213628 (+)
G15927 NA non-coding downstream 35975 1215316 ~ 1215605 (+)
G15929 NA non-coding downstream 61005 1240346 ~ 1241047 (+)
LOC122330723 NA non-coding downstream 99922 1279263 ~ 1281171 (+)
LOC122330682 NA non-coding downstream 203907 1383248 ~ 1384894 (+)
LOC122330066 NA other upstream 125081 1047012 ~ 1051151 (+)
LOC122330135 NA other upstream 166801 1005983 ~ 1009431 (+)
LOC122330463 NA other upstream 400698 754430 ~ 775534 (+)
LOC122330407 NA other upstream 539993 625364 ~ 636239 (+)
G15563 NA other upstream 619151 553698 ~ 557081 (+)
G15939 NA other downstream 111628 1290969 ~ 1291564 (+)
G15955 NA other downstream 211398 1390739 ~ 1392850 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other downstream 216506 1395847 ~ 1408926 (+)
G16003 pick1,LOC107734822,LOC106607154 other downstream 380046 1559387 ~ 1649494 (+)
G16002 pick1,LOC107734822,LOC107734770 other downstream 439971 1619312 ~ 1865229 (+)

Expression


Co-expression Network