pbx4 (pbx4,LOC103392870,LOC102788435)


Basic Information

Item Value
gene id pbx4
gene name pbx4,LOC103392870,LOC102788435
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9093815 ~ 9127734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229555.1
GATGGTGACGTATGGCTCGTATGTAGTAGCTCAGAGGGGGAGAAAGAGCCGCCGAGGAGGGCAGAAACACAAGAGAGGGGCAAGTCTTTCTACGACAGCACCGCGGCTCGGGAACAAACCAACTGAGTCGTTTCGGCTGGCATGGAGCTGAGCGTCGCCGTTCTGAGCCGTTTCGCGCCATCCACCTAAAGCCGGGGCATTTCGCGCAGAGCCGAGGGGGCAGTTTGCTGTCGGTCCCGCGGGTGTTTGTGGAGCCCGTGCGAATCTGTTGCTAACAGCGCTCGAATGCTAGTTAGCCCCGCTGCTAAGCAGCTAGCCAACACTGCGAGTCAATTGTGTCGGAGATCGCGGAATTACGCGTTAAAGCCGTTGCGCTCCTCCGCCGCTCCCGGGATTCGTTTTGCTCGTTGGGTTTTTGCGTTTTCCCAAGCGAGGGGACGCTAATAAGCGACGGCTAGAGTTTCTATTTCGATTTATTTCCAGCAGAGAGTTTTTCACCCTCCGTATTAGCTTGTTAGCCGCTCCGGTTGGTTTAGTCCAGCTTGTTAGTAGTGTCTGAGATTTTTACTGTAACGTTAATAGCTGTCAGCCGGATTGGTCGCGTTATTTGTGGACATGATTGATTTTATCGCGGACCGCGAGTTGTTTAGAGAGGCGATACTTTGAGATGCCGCGCGTGGGATACTTCATGTTTCCAGGGAcgcttttattttcttgttagACTGGCTTTATGGGAGTGCTAGTGTGCAGGGGCTCGCTTTAGATAACGCTGGgatcaaaacattgttttttttgtttgtttgtttttttatttcccgTCCACGCGAGCTGGTTATCCACCTTtcgccacacacacaccgcGCGTCGTTTTGATGCGGTTTAAGCCCACGTTTCAGTCGCGCTCTCATTGTTTTCTCGTCCGATAGCGGGTTCGCTCGGCTCCACGCTTCCATTCACGCCGTCGGTGGTTCATGTACGCTGAGACAGGGCGCTGATAACACGCTTTCATTTGGTTTGCGGCGGGGAAAACGGCGAGATTCGGCTCGAGGCATCATGGATGAGCAGACGCGAATGCTGGCCGGCATGGGCGGACTCGGCGGACTCTCTCAGGCCGACGTGGGTGACCCCGATTCGGTTCGGAAGCAGCAGTCCCTCGGTCAGCCGCAGCAAGACATAGGGGATATTCTCCAGCAGATCATGGCCATCACCGACGAGAGCCTCGACGAAGCCCAGGCGAGAAAACACGCACTGAACTGCCACAGGATGAAGCCGGCTCTCTTCAGCGTTTTATGCGAGATCAAAGAGAAAACTGTGCTGAGCATCAGAGGTGTACAGGAGGAGGACCCTCCAGACCCCCAGATCATGCGTCTGGATAACATGCTGCTGGCCGAGGGAGTGTCCGGGCCCGAGAAGGGCGGCGGATCGGCCGCGGCGGCAGCAGCGGCGGCTGCCGGAGGATCACCCAACGACGGCAGCATCGAGCACTCCGACTATAGAGCCAAACTTGCGCAGATCCGCCAGATCTACCACTCTGAACTAGAGAAATACGAACAGGCTTGCAGCGAGTTCACCAATCACGTGATGAACCTGCTGAGGGAACAGTCCCGTACACGGCCTATCTCGCCCAAAGAGATTGAGCGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACCTGTGAGGCCGTCATGATCCTTCGCTCTCGCTTCCTCGATGCcagACGTAAGAGACGCAACTTTAATAAGcaagccacagaggtgctgaaTGAGTACTTCTACTCTCACCTCTCCAACCCTTACCCCAGCGAGGAAGCCAAGGAAGAGTTGGCCAAGAAATGTGGGATCACTGTCTCTCAGGTCTCGAATTGGTTTGGCAACAAGAGAATTCGGTACAAGAAGAACATTGGTAAGTTCCAGGAGGAAGCAAACCTGTACGCCGTTAAAACAGCCGTGGACGCTGCCAATGTGTCGGCACAGGCCAGCCAGGCAAACTCTCCAGCAACACCCAACTCAGGTGGATATCCTGCACCGTGCTACACACCTGACGGCAGGCTATGAAGAACTGTCAGGAAGTCCTCTTTACACCCCACACCGTCTAGATGCTAACAACAGCTGGCAAGACAACCCCAACCCTTCCTCCATCACCTCTCCACCAGGACCACCTGGCAGCATCCACTCGGACACCTCCAGCTAATGCCGCTcaccctaaacacacacacacacacacactcacacacacacacagcatctcaTCATCCAGTCTCACCCGCTCTCTCCTGCTGCTCACAGCTTTCATCCATCACTAGCAGATGTCAAAGGTCTTCCATAGTCCTTGTTCCACTCTCTTCAagtgtgccagggttcacacgCTGAACCAGActatctgaaacacacacacacacacagaacgtCTCATTTGCCCAGGACGAGTCTGAATAAACCACACATTGTCTTCAAAGGGTGGACGGTTTACGCCCAACTCCACATTTTACCTTTCCTTCCTTGTTTCGACTCGTCATGATGGGGATTACACAACAGCTCCCTCCTCGCTTGTACCAAAGTGCTGTCAAAGGTTGTCGCACCTTCCGCTCGTCGAAGAACAACCTCAAGACAACTAAACCACGAAAACACCCGCTTTTTAATACGCTTTCCGGTCACGGCCGTCTCACGAAAACGCCGCATTGTTCAACGTTGCGTTAAGCACAAATCCCGTCTGTAAGGCTTTTGAGCCGGTGGCCGGATGCAGAGGAATCCATCAGCGTAAAGGCACGCCGGACTACTAGCTGATCGCCGGAGAGGTCGGCGTAAAACGGGAGGAAACCCCTCAACAAGCGATCGACGGCTACTTCGCGTTTCCTCGGcccgctcgctctctctcaacagttgactttgtttttaatagtttagctACAGTATTTTTCCTGCAGCCCcacccccccacacacacaaagatgcACCAGCCGCCAAATAAAAGACTCGACAAGAACTCGACCTTGTGTTCGGAAAAGGATAGCTGGAGTATTTGTTCGGATTGGGACGCGGGTGggtatttagaaatatttttaaagggaaagaaaaaaatattccactGTCTTCCATGCATGTAGGGTGTTgagatgttttagtgattccATTTAGCcgaatttttatttcattttttcttcctttttcctttttaagttttggacaaaaaaaaaatgaatattataaaagGAGAGGGTGTGAGTAACAgaccaaataaacaaatgaacttCTCCGGAAACGAAAAACTTCGTACTGCCCGATCCAGTGCTTCATGCCGGCGTTTGGTTTCTCTTGGATTTCCGCGGTATTTCACCGCACGTTTTCATAACAGGCATCTGTGACGCAAAAACCTTTCCGAGGAGGCCGACGAGTTTGCAGATGTCATGAAGTTGTTTCGGTTGGCCGTGCGCTAGGGCCGCTCACCTTACTGTGTTGTGTGTACGGGTGTCTGTTTTTTAAGGGTTGGGTCGTCTCGTCACTCACTCGTGCTTTTGAACTGATTGTATTGTACGTGCAATTGAAAGCACCTGTTCCTTGGTAAAAGcatgctgtctttttttctttctttcttcctttcttttattgttgttgcCTACAGTTTCACTAAACAAAGGAACTCCGTTGTTTTGTAATCAGTTAACATAGCCAAGCAACAAGGGCTTTTCTCCTTTcaaatttaaccaaaaataagCACTGGATGCGTTGCGATTTGAAACAGACGGACTAAAGCTAGTAGAGGAACAtcaaatgaatttatatttactttttccagACAAGTTGTTTGTATTCCCAGaacttgtttttatgttttgctgtttttttcgtTACCTTTAGTCGTGGAAGCACCAGGGCGTTTTGATATACGAATGGAAATTCTATATATTACACAAAGGACTTAATAACGTTGAAATGTAAATTGGGgttttgtttatatgtacaCATGGAAAAACAAACTCTGAGGAGCTTTTCAAGCTATTATCGTGTCCTCTATAGATTACTGttagttaaaaacatttcatatggATATCTCCAACTAATGCTATTACTACACcaaatttctttgttttcttttctatcAGTCATCTATGGATGTCACTGTACAGATTGTGGAATGTTTCAGTGTATTTTCTCTTTTCGTATGCtttcattttcgttttttttaatcgcTGGGGGTTTCGGATTCGCTCACGAGCAAGAGTAATATTCGTTAGTCtttgtaatattcattttagcatttcagttactttttatttggaTCGAGAGCCTCGagtggttttttgttttttcgttttgggtttgtttgtttgtttgttttttttgtgtgtgtggttttgtcAAAAGCTGGTAGCATTTGTTTGAGGTGCTGTGAAAATCCACTCCGTTGATCATCACACTATTATTAAACCGAAAGCCTCATTGGACTATAAATGCCGTAAGCTATGATGATTTCGAACACTACATATCATTGGTAGATTTGGAGCTCctaaatgtcttttttcccAAAAGTGCATCCGTAGAACCTATTGAGAAACTTGGGATTGTGATCTGAGGTGGATTCCGTGGCACCTTATCAAATGACTTCGGcattttttctcaatttttatcattattttagtaGAATTGTAGTACACGCTTCCTTCTGTATTTACCAttctctccctcctctctaccTCTCCTCTCTCCATTTCACTTGTATATAAACCCCACCATTTTCAGACTTGGTAGTCTGTATAAACTCCTTTTATACCTCAACTTTAGAACTGTTctagtgagagagaaaaaaagaaatatgagaAAATTGTAGTGTTCCttattagaaaaacaaaaactaataaaataatctagTGTGCTTTTGA

Function

symbol description
pbx4 Enables DNA binding activity and DNA-binding transcription factor activity. Involved in nervous system development and positive regulation of transcription by RNA polymerase II. Acts upstream of or within animal organ development; neuron development; and regulation of histone modification. Located in nucleus. Orthologous to human PBX4 (PBX homeobox 4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0001764 neuron migration biological_process
GO:0031016 pancreas development biological_process
GO:0007411 axon guidance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0030901 midbrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09355 PBX1; pre-B-cell leukemia transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229555.1 True 4904 mRNA 0.47 9 9093815 9127734

Neighbor

gene id symbol gene type direction distance location
LOC122332643 LOC107670450,LOC107672442,LOC107711182,LOC107757351,LOC107567228 coding upstream 4140 9084364 ~ 9089675 (+)
atp13a1 atp13a1,LOC107711248,LOC107672485,LOC107757369,LOC107670516 coding upstream 10340 9067646 ~ 9083475 (+)
lmx1al lmx1al,LOC107672514,LOC107670451,LOC108429662,LOC108256788,LOC107567229 coding upstream 29668 9043438 ~ 9064147 (+)
LOC122341294 gmip,LOC107672475,LOC107670530,LOC107587992,LOC107711163,LOC107757342 coding upstream 52282 9024378 ~ 9041533 (+)
colgalt1a colgalt1,LOC107672476,LOC107757371,LOC107711180,LOC107670492,LOC107567242,LOC108429625,LOC108257422 coding upstream 72169 9013095 ~ 9021646 (+)
stxbp2 stxbp2,LOC107711254,LOC107587946,LOC107672507,LOC107670524,LOC107757364,LOC107563326 coding downstream 61402 9189136 ~ 9199702 (+)
LOC122341842 LOC107588008 coding downstream 75097 9202831 ~ 9206354 (+)
xab2 xab2,LOC107672506,LOC107670481 coding downstream 78920 9206654 ~ 9212934 (+)
camsap3 LOC107711256,LOC107672468,LOC107587945,LOC107670479,LOC107757361 coding downstream 86510 9214244 ~ 9245657 (+)
zmp:0000001048 zmp:0000001048,LOC107711259,LOC107670472,LOC107563320 coding downstream 133171 9260905 ~ 9267730 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding upstream 211693 8881198 ~ 8882122 (+)
G18092 NA non-coding upstream 417929 8671661 ~ 8675886 (+)
G18055 NA non-coding upstream 603398 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 779325 8312389 ~ 8314490 (+)
G18025 fam234b,LOC107576065 non-coding upstream 876784 8216524 ~ 8217031 (+)
G18303 NA non-coding downstream 122365 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 134236 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 285910 9413644 ~ 9414007 (+)
G18429 NA non-coding downstream 356701 9484435 ~ 9484736 (+)
G18443 NA non-coding downstream 413966 9541700 ~ 9543366 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other upstream 81637 9010050 ~ 9012178 (+)
LOC122341292 LOC107729471,LOC107687638 other upstream 105005 8980591 ~ 8988810 (+)
G18048 NA other upstream 351513 8513349 ~ 8742302 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other upstream 530436 8260084 ~ 8563379 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 10733 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 56665 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 565215 9692949 ~ 9697915 (+)
G18491 NA other downstream 612062 9739796 ~ 9749880 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other downstream 671081 9798815 ~ 9799796 (+)

Expression


Co-expression Network