LOC122336412 (LOC107658520,LOC107554095,LOC107582983,LOC107729569,LOC107689640,LOC107737779)


Basic Information

Item Value
gene id LOC122336412
gene name LOC107658520,LOC107554095,LOC107582983,LOC107729569,LOC107689640,LOC107737779
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12315450 ~ 12320066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233704.1
TCATAGGTTAAGTGCTGCGCTTGGTGACTAGTCGCTTGTGTGTTTGCTGTTGTTAGTTTGTTCTTAAAATCTTCCTCGGGGTTCTGCGGATTGTCTCCACTGAAGCAGCGATGGCAAGTCATGTCAAGAGCGATGAGCCTGGGTCTGTGGAGAAGGACAGCGCTTTTGCGGCACAGACAGACAGAGTGAACGTAACAGAAACTGATAGCATGAATCAAAGTGTATTCAGTCTGGATCCTAATGAGGAGTATAAGATGGACCACAAGAAGCGAGGAATGGCTCTGATCTTTAACCATGAACGTTTTTACTGGCAGCTCATGTTGCCCAGCCGCTCTGGCACAAATGCAGACAGGGAGAACCTTGTTAGAAGATTTCGAGATCTGGGATTTGACGTCAAGGCTTGCGACGATTACAAACGGGAAGAAGTTTTATCCACAATCGGAGAAGctgctgctgctaACCATGTAGATGCAGactgttttgtctgtgtatttttaagCCATGGGGAAAATGGTCACATTTATGCCTATGATGGGCAGATTGAAATTCAAGAAATCACTGATCTGTTCAAGGGGAATAAATGCCATAGCCTTGTAGGGAAACCCAAGATCTTCATCTTGCAGGCTTGTCGTGGAGACAAACATGATGATGCTGTGACACCAATGGATGTGGTGGACAGTCAGACGGTCAATGAAGTGGTTGTGGACGCGGGGGCGCTCTCCACCCTTCCAGCAGGAGCAGATTTCCTAATGTGCTATTCAGTAGCTGAAGGATATTACTCTCATCGTGAGACAGTGAATGGCTCGTGGTACATCCAGGATCTGTGCGAAATCCTGAGGCGTTACGGATCGACACTGGAGTTCACTGATGTGCTGACACTCGTTAACAGGAAGGTTTCTATCCGCAGTGTAGCAAACTGCAAGGATCGCTCTGCTATAGGCAAAAAACAAGTGCCTTGCTTTGCGTCCATGCTTACTAAGAAGCTATTTTTCAGGCCTAAGAAGTAATATTACTGTTCGGGCAATATTGCAGGTAAAAATTCAGggattatattattttattttcattttcaaaatggaaATCATGCAAGTTTGCATGTTTTAGCCTGGAGGTTTGACAAGCTCAGGGTTACAAAGTGCAAATAGTTTAACTTTACCCATTAATGATGATAGACATTAGGCTTCACTGTTTACACTAccaatacaaaaaatgctttaaattacCAGCAGGCCAAGATGAAGACAATTCCTACTACAAAACTACTTATAAGAACCAAAGAAACCTTGAAATGTATTGATATTCATTAAAGTAATGTGTGTCAATCCTGCGCATTACATTCATGATCTGTCATTAATAGCACTATAGCTTGATCTCTTTATCTGTGAGCCATGTATTTGTACCTCAAGATCTGTTAAGAAGCAATACAAAGGAGAAACAATACAAGAAACTCCAGTTAAACGGCTTTATTTGTTTACCAGCGTCGCATATAATTTTCATAGAACTGCATGGGGAATTTTGGGAATCTTTTATGGTACATGTTGTGTCTTAAATGTTGAAAAGAGTGACTTCTAGAGATCCGGCCACAGAGATGCACtacatttttacttgtttctGACACTACAGATTaaactaaaagtaaatatataagaTAAGAACTGAATGTCTTTACCCATCCTTTACTGAGCTCTGATCTTGTAGTGGAATTTATAATCTGGCTGTTTTAATGCATAGATCAGTAGCATCATGTTCATAAATGACCAAAGACtttgaatatttttcttatttaaaacttgattcttctgtagttatattgtgtagtATGAcctaagtaaataaaaagttgtcATTTTTCTAGGATGATATGACTATACCCTTTTTCTGGCATAATAATCAAAGAGGTTTGCTGCTGTACAGTTATAGTGCCTGTGCAAAATAGTCCCGAGCTTGCAAGACAGGTTCCATGCGGAAGCAagagggtctggctgttttcaAGCGCTGCAtgatatcactgcgcctgcCTCCTTGATTTATTACTCTGGAATGCGATTATAGTTCCATACATTGGCAAGAAAATTGCGACTTTTAATTTTCGGCTGGTCTTTTTACACGATATAACTAGAAGAAGAGTCAAGTTACAagtaggaaaaatattgaaaccgGTCCATTTCTGAACATGATTCCACTGGTCTAACtggattcagtgatctatgctaaaagtcgccagacctggagattggctgaatgaattcaaaaatggtaaaactctaGTCTAGTGGAGTTAGAAGACGAgcctatttacaaaaaaagtgttcctttaagaaggAGTTATTCATTTCCCGAGTAATGTGActgttttctgttctgtttggATTCCTGGGAAATTGGCTGTTGTGCAAAATACTGCATAAGTAACTTTCGCTTTACTCAGCATTTAAGACTAACTCTGTATTTGCTAT
>XM_043233705.1
GCTGTTGTTAGTTTGTTCTTAAAATCTTCCTCGGGGTTCTGCGGATTGTCTCCACTGAAGCAGCGATGGCAAGTCATGTCAAGAGCGATGAGCCTGGGTCTGTGGAGAAGGACAGCGCTTTTGCGGCACAGACAGAGTGAACGTAACAGAAACTGATAGCATGAATCAAAGTGTATTCAGTCTGGATCCTAATGAGGAGTATAAGATGGACCACAAGAAGCGAGGAATGGCTCTGATCTTTAACCATGAACGTTTTTACTGGCAGCTCATGTTGCCCAGCCGCTCTGGCACAAATGCAGACAGGGAGAACCTTGTTAGAAGATTTCGAGATCTGGGATTTGACGTCAAGGCTTGCGACGATTACAAACGGGAAGAAGTTTTATCCACAATCGGAGAAGctgctgctgctaACCATGTAGATGCAGactgttttgtctgtgtatttttaagCCATGGGGAAAATGGTCACATTTATGCCTATGATGGGCAGATTGAAATTCAAGAAATCACTGATCTGTTCAAGGGGAATAAATGCCATAGCCTTGTAGGGAAACCCAAGATCTTCATCTTGCAGGCTTGTCGTGGAGACAAACATGATGATGCTGTGACACCAATGGATGTGGTGGACAGTCAGACGGTCAATGAAGTGGTTGTGGACGCGGGGGCGCTCTCCACCCTTCCAGCAGGAGCAGATTTCCTAATGTGCTATTCAGTAGCTGAAGGATATTACTCTCATCGTGAGACAGTGAATGGCTCGTGGTACATCCAGGATCTGTGCGAAATCCTGAGGCGTTACGGATCGACACTGGAGTTCACTGATGTGCTGACACTCGTTAACAGGAAGGTTTCTATCCGCAGTGTAGCAAACTGCAAGGATCGCTCTGCTATAGGCAAAAAACAAGTGCCTTGCTTTGCGTCCATGCTTACTAAGAAGCTATTTTTCAGGCCTAAGAAGTAATATTACTGTTCGGGCAATATTGCAGGTAAAAATTCAGggattatattattttattttcattttcaaaatggaaATCATGCAAGTTTGCATGTTTTAGCCTGGAGGTTTGACAAGCTCAGGGTTACAAAGTGCAAATAGTTTAACTTTACCCATTAATGATGATAGACATTAGGCTTCACTGTTTACACTAccaatacaaaaaatgctttaaattacCAGCAGGCCAAGATGAAGACAATTCCTACTACAAAACTACTTATAAGAACCAAAGAAACCTTGAAATGTATTGATATTCATTAAAGTAATGTGTGTCAATCCTGCGCATTACATTCATGATCTGTCATTAATAGCACTATAGCTTGATCTCTTTATCTGTGAGCCATGTATTTGTACCTCAAGATCTGTTAAGAAGCAATACAAAGGAGAAACAATACAAGAAACTCCAGTTAAACGGCTTTATTTGTTTACCAGCGTCGCATATAATTTTCATAGAACTGCATGGGGAATTTTGGGAATCTTTTATGGTACATGTTGTGTCTTAAATGTTGAAAAGAGTGACTTCTAGAGATCCGGCCACAGAGATGCACtacatttttacttgtttctGACACTACAGATTaaactaaaagtaaatatataagaTAAGAACTGAATGTCTTTACCCATCCTTTACTGAGCTCTGATCTTGTAGTGGAATTTATAATCTGGCTGTTTTAATGCATAGATCAGTAGCATCATGTTCATAAATGACCAAAGACtttgaatatttttcttatttaaaacttgattcttctgtagttatattgtgtagtATGAcctaagtaaataaaaagttgtcATTTTTCTAGGATGATATGACTATACCCTTTTTCTGGCATAATAATCAAAGAGGTTTGCTGCTGTACAGTTATAGTGCCTGTGCAAAATAGTCCCGAGCTTGCAAGACAGGTTCCATGCGGAAGCAagagggtctggctgttttcaAGCGCTGCAtgatatcactgcgcctgcCTCCTTGATTTATTACTCTGGAATGCGATTATAGTTCCATACATTGGCAAGAAAATTGCGACTTTTAATTTTCGGCTGGTCTTTTTACACGATATAACTAGAAGAAGAGTCAAGTTACAagtaggaaaaatattgaaaccgGTCCATTTCTGAACATGATTCCACTGGTCTAACtggattcagtgatctatgctaaaagtcgccagacctggagattggctgaatgaattcaaaaatggtaaaactctaGTCTAGTGGAGTTAGAAGACGAgcctatttacaaaaaaagtgttcctttaagaaggAGTTATTCATTTCCCGAGTAATGTGActgttttctgttctgtttggATTCCTGGGAAATTGGCTGTTGTGCAAAATACTGCATAAGTAACTTTCGCTTTACTCAGCATTTAAGACTAACTCTGTATTTGCTAT

Function

NR:

description
PREDICTED: caspase-6-like isoform X1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K04396 CASP6; caspase 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233704.1 True 2456 mRNA 0.40 8 12315450 12320066
XM_043233705.1 False 2407 mRNA 0.40 8 12315450 12320021

Neighbor

gene id symbol gene type direction distance location
aoc2 aoc2,LOC107658518,LOC107729559,LOC107582984,LOC107689706 coding downstream 14877 12297054 ~ 12300573 (-)
g6pc1b g6pcb,LOC107582985,LOC107729528,LOC107658515,LOC107554093 coding downstream 24466 12288422 ~ 12290984 (-)
kat7a LOC107689642,LOC107554133,LOC107737751,LOC107729527,LOC107582986,LOC107658517,LOC108437993 coding downstream 27574 12279708 ~ 12287876 (-)
zgc:113090 LOC107729437,LOC107658438,LOC107577287,LOC107737781 coding downstream 36021 12276835 ~ 12279429 (-)
pheta2 zgc:153733,LOC107658512,LOC107729468,LOC107582989,LOC107554091,LOC107689645 coding downstream 59672 12251917 ~ 12255778 (-)
LOC122342092 LOC107758479 coding upstream 2178 12322244 ~ 12332841 (-)
rarab rara,rarab,LOC108434941,LOC108276117,LOC108261354,LOC107737746,LOC107695008,LOC107554136,LOC107582978,LOC107689638 coding upstream 25369 12345435 ~ 12447724 (-)
si:dkey-283b1.6 NA coding upstream 173652 12493718 ~ 12498011 (-)
abi3a LOC107758490,LOC107583075,LOC107695026 coding upstream 178708 12498774 ~ 12508792 (-)
LOC122342135 LOC107695140,LOC107758481,LOC107583074 coding upstream 189125 12509191 ~ 12510507 (-)
LOC122332655 NA non-coding downstream 20027 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 44514 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 85071 12226575 ~ 12230379 (-)
G19503 NA non-coding downstream 132966 12182258 ~ 12182484 (-)
G19463 NA non-coding downstream 218088 12092899 ~ 12097362 (-)
G19677 LOC107737766 non-coding upstream 544244 12864310 ~ 12886954 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding upstream 580715 12900781 ~ 12902910 (-)
LOC122332187 NA non-coding upstream 752494 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 760004 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 770605 13090671 ~ 13091152 (-)
LOC122341756 NA other downstream 394683 11909775 ~ 11920767 (-)
G19383 NA other downstream 434491 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 587449 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 600731 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 886271 11411985 ~ 11429179 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 19121 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 302717 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 361924 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 685930 13005996 ~ 13068190 (-)
G19700 NA other upstream 726975 13047041 ~ 13047494 (-)

Expression


Co-expression Network