cog1 (cog1,LOC107654497,LOC107601277,LOC107721521,LOC107590385,LOC107688115,LOC107719994)


Basic Information

Item Value
gene id cog1
gene name cog1,LOC107654497,LOC107601277,LOC107721521,LOC107590385,LOC107688115,LOC107719994
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14111547 ~ 14119590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233916.1
TTTGTTTACGTGGAAGGAGAGCCGTTCGTGCTTCCGGGTTTTATTTCTGCAGTTATCTGCCCATTTTTAAAGAGATGGCTACTGTACCGGCCCAGTCTCTCCGGGTCTCAGAGATTAAAGACCCCACCGTTTTGTTTGAACGGTACAGCACGGAGGAGATCCGTGCTATCGAGAGGAAAGTGCGCGGAGAGATCGAGCAGAAGAAGGAGGAACTTCGACAGATGGTCGGTGAACGTTACCGGGATTTGATCGACGCCGCTGACACGATCGGTGAGATGAGACAGTGCTCGGAGAGTGTCGTTCAGTCCATCCAGGACATGTACCGGTACTGCCACAAACTCAAACAGGCGAAGCACGCCCCTCAGTCCAGCGGAAAAGCTGAGGGTCAGAAACAGTCGCAGGAGAGATTCTACACGATGGCCTCGCAGATAAAGCTCCTGCTGGAAATCCCGGAGCGTGTGTGGAGCGCGATGGAGTCCTCGCAGTACCTGCAGGCCACACAGCTCTACCTGCTCTGCTGCCACCTTCACAGCCAGCTGCACTTGGAGGGAGGAGGGCATCAGTACAGCCCCGTCCTCTCTCGCTTCCCCATCCTGGTGCGCCAGGTAGCAGCTGCTGGTCATTTCAGGTCTACAATCCTATTGGAGAGTAAGTCTGTGCTGCGTGGCAGGGCTGTGTCTGATCAAGCGATCGCCGAAGCGCTGGTCTCCACCATGCTCCTGGAAGACAGCTCTCCTCGCCAGGCCCTTGCTGATTTCCTGCTGGCTAGGAAAGCGTCCATTCAGCAACTGCTCAATCAGCCCCAGCATGGTGCTGGTGTGAAAGCACAGGTTTGTTCTTTGGTGGAGCTGCTGGTCACCACTCTGTACCAGGCATATGCTGTGTTTTACGTGCCTCCTGAGGGCCAAGTGTCCGATACCGGTCTGGGATGTGGCCTGCTTTTCACTACCTTGGAGAATGTGACCTCCAACAAATCTGGGAAAGAGAAGAAAGTTCTGGACAAGGAGATGAGCACAGGAAGCTGGTTTAAACACCTCCCCCTCTCGGTGATGAACTTCCAGCCTGCTCTTCGGACACTAGCGCAGCCTATCCAGAGGGAGCAGCTCAGAGACACGCTGCAGCAGTGGATTGATACcTGCAAGGAGGATATCCGCAGCGGAGTCAGCAGTCTTCTGGTCTATGTGAAGAGTCTAAAGGGTCTGGCTGCGATTCGGGATGCAGTGTGGGAGCTGCTCAGCAGCGAGTCCATCAGTCTGCACTGGAGCACTGTGTGTCAGTCCCTCCTCGAGCGACCTCTGGCCTTGTGGGATGACCTTTTGCAGCAGCTCTTCCTGCAGCGACTTCAGGCGATCACTCAGGAGGGCACAGAAGGGATCTCCAGCAGCTCCAGACAACTCTTGTCTTCAGCTCTCCGGGATCTACAGGGTCAGGCCACAGCTGGGAGTTTCAGCCGTGGAGCACAGTACGAGAATGACGTCGCAGCTTTCCTGTGGTCTGAGTCTCAAGGCGACCTGCTCAACGACACAGCCTGGGTGAATGTAGCCCAGCGCAGCCCACAGCAGAAGAGCGGCCTGTCCATGAAGACCCAGGCCCTCACCCCCTGCGTTCAGACCTTCTGCTCCTCCCTGGACTCTAGGCTCAAAACCAAATTAGATGATCTGCAGCACTACTTGCCCTCTGAAAAAAATGGCAAAGAGCTTTCAGAGATGGTCCCAGTCACCACTAACTCAACTATTAACCGCTTTATGGATGCTGGGGCCGTGGAGGACACTCTTAGAGAGCACTGCTTGGCATGTGTCCGGGACATCCTTTCCAGTGTGCGTGCCGAGCTCGCTACCGCCCAGGCCAAGACCAACAGCCCCAGCCAGTTAAGTTCAGTGCTCTTTATGGCCAGGCTATGCCAGTCAATGGGGGAATTGTGTCCTAGTCTGAAACAGTGCATTCTGGGGAAGCAGGGGGGCTTGGATCCCATAAACAGAGGCACTCCAAGACAGGGCAAGAAGTTAGGCAAAGGCAAGGCAGCGGAGGTCAGCCCAGCACAGTCCAAGTGGAGCTGTCTGAAAGACGAACTCCTGTCCTGCAGCATGGAGGCCTATGGTATCTGGAGCTCAGCACTCACCAGGGCACTTGTGGGCAGTTTTGCTACGACTCTTCACTCTGGAACCGCCGGATCCATCCTGAGCACCGCAACAAATTGGGAAGAGCTTGAAATACAGGAAGAAACAGAGTCAGGAAGCAATATAATGTCCAAAATTCGCCTCCCTGTGCAGCCGTCGTGGTATGTTCAGTCGTTACTCTTCCATCTGTGCCTTGAGGTCAATAGGGTCGGAGGTCACGCGTTACCAAAGGTCACTCTCCTGGACCTTTTGCGGGGTTGTCTAGATCAGGTGGTGAGCGAGTATGAAAAACTCACTCAAAAAACACAGAGCAAGGATGCAGCCCTCCCCATGACCCAGAACAGAGCTTTGCAGCTGCTGTTTGACCTTCGCTATCTCAGTGGCACTCTAGGGTCCCGCCTTGAAGAGGGCAGGAGTTCCCGCTCTCAGCAAGACCCAAGGATCCAGCAGGTCTGCGACTCCCTGGAAAGTCACATTGATCCATTTGACCTGGATGTTTTCACTCCACATGTGAACAGCAACCTGAACCGACTCTCACAGAGGACCTCTGTGCTTTTAGGACTGTTGTCTGGTACGGAGAAGCAGTTTACCTCTAGGACCAACAATATCAACTCTCAGGAACCGTACAACATCCTTCCTTTGGCAAGCAGCCAGATCCGGTTTGGTTTGCTGCCACAGAGCATGACAAACTCTCGGAAGACTAATTCAGCCACGCATGGAGCAGATATCACCAGACCACTGgtGGCTCCCTCTTCTGCTTCTGCTCCACAGGACAGTTTCCGCCCAGGAAATCTCTTCAGGCAGTTAGCCAATCAAGAAGAGGAATCCGCAGCCCCTTCTCTCTTTAAATTAGGCTGGCTTTCTGGCATGGccaaataaacttttattaaaaaattgctatttttttaatccgCATACAACactatgtaaaataatatttaaaatacattttgaaatgttgaaa
>XM_043233917.1
TTTGTTTACGTGGAAGGAGAGCCGTTCGTGCTTCCGGGTTTTATTTCTGCAGTTATCTGCCCATTTTTAAAGAGATGGCTACTGTACCGGCCCAGTCTCTCCGGGTCTCAGAGATTAAAGACCCCACCGTTTTGTTTGAACGGTACAGCACGGAGGAGATCCGTGCTATCGAGAGGAAAGTGCGCGGAGAGATCGAGCAGAAGAAGGAGGAACTTCGACAGATGGTCGGTGAACGTTACCGGGATTTGATCGACGCCGCTGACACGATCGGTGAGATGAGACAGTGCTCGGAGAGTGTCGTTCAGTCCATCCAGGACATGTACCGGTACTGCCACAAACTCAAACAGGCGAAGCACGCCCCTCAGTCCAGCGGAAAAGCTGAGGGTCAGAAACAGTCGCAGGAGAGATTCTACACGATGGCCTCGCAGATAAAGCTCCTGCTGGAAATCCCGGAGCGTGTGTGGAGCGCGATGGAGTCCTCGCAGTACCTGCAGGCCACACAGCTCTACCTGCTCTGCTGCCACCTTCACAGCCAGCTGCACTTGGAGGGAGGAGGGCATCAGTACAGCCCCGTCCTCTCTCGCTTCCCCATCCTGGTGCGCCAGGTAGCAGCTGCTGGTCATTTCAGGTCTACAATCCTATTGGAGAGTAAGTCTGTGCTGCGTGGCAGGGCTGTGTCTGATCAAGCGATCGCCGAAGCGCTGGTCTCCACCATGCTCCTGGAAGACAGCTCTCCTCGCCAGGCCCTTGCTGATTTCCTGCTGGCTAGGAAAGCGTCCATTCAGCAACTGCTCAATCAGCCCCAGCATGGTGCTGGTGTGAAAGCACAGGTTTGTTCTTTGGTGGAGCTGCTGGTCACCACTCTGTACCAGGCATATGCTGTGTTTTACGTGCCTCCTGAGGGCCAAGTGTCCGATACCGGTCTGGGATGTGGCCTGCTTTTCACTACCTTGGAGAATGTGACCTCCAACAAATCTGGGAAAGAGAAGAAAGTTCTGGACAAGGAGATGAGCACAGGAAGCTGGTTTAAACACCTCCCCCTCTCGGTGATGAACTTCCAGCCTGCTCTTCGGACACTAGCGCAGCCTATCCAGAGGGAGCAGCTCAGAGACACGCTGCAGCAGTGGATTGATACcTGCAAGGAGGATATCCGCAGCGGAGTCAGCAGTCTTCTGGTCTATGTGAAGAGTCTAAAGGGTCTGGCTGCGATTCGGGATGCAGTGTGGGAGCTGCTCAGCAGCGAGTCCATCAGTCTGCACTGGAGCACTGTGTGTCAGTCCCTCCTCGAGCGACCTCTGGCCTTGTGGGATGACCTTTTGCAGCAGCTCTTCCTGCAGCGACTTCAGGCGATCACTCAGGAGGGCACAGAAGGGATCTCCAGCAGCTCCAGACAACTCTTGTCTTCAGCTCTCCGGGATCTACAGGGTCAGGCCACAGCTGGGAGTTTCAGCCGTGGAGCACAGTACGAGAATGACGTCGCAGCTTTCCTGTGGTCTGAGTCTCAAGGCGACCTGCTCAACGACACAGCCTGGGTGAATGTAGCCCAGCGCAGCCCACAGCAGAAGAGCGGCCTGTCCATGAAGACCCAGGCCCTCACCCCCTGCGTTCAGACCTTCTGCTCCTCCCTGGACTCTAGGCTCAAAACCAAATTAGATGATCTGCAGCACTACTTGCCCTCTGAAAAAAATGGCAAAGAGCTTTCAGAGATGGTCCCAGTCACCACTAACTCAACTATTAACCGCTTTATGGATGCTGGGGCCGTGGAGGACACTCTTAGAGAGCACTGCTTGGCATGTGTCCGGGACATCCTTTCCAGTGTGCGTGCCGAGCTCGCTACCGCCCAGGCCAAGACCAACAGCCCCAGCCAGTTAAGTTCAGTGCTCTTTATGGCCAGGCTATGCCAGTCAATGGGGGAATTGTGTCCTAGTCTGAAACAGTGCATTCTGGGGAAGCAGGGGGGCTTGGATCCCATAAACAGAGGCACTCCAAGACAGGGCAAGAAGTTAGGCAAAGGCAAGGCAGCGGAGGTCAGCCCAGCACAGTCCAAGTGGAGCTGTCTGAAAGACGAACTCCTGTCCTGCAGCATGGAGGCCTATGGTATCTGGAGCTCAGCACTCACCAGGGCACTTGTGGGCAGTTTTGCTACGACTCTTCACTCTGGAACCGCCGGATCCATCCTGAGCACCGCAACAAATTGGGAAGAGCTTGAAATACAGGAAGAAACAGAGTCAGGAAGCAATATAATGTCCAAAATTCGCCTCCCTGTGCAGCCGTCGTGGTATGTTCAGTCGTTACTCTTCCATCTGTGCCTTGAGGTCAATAGGGTCGGAGGTCACGCGTTACCAAAGGTCACTCTCCTGGACCTTTTGCGGGGTTGTCTAGATCAGGTGGTGAGCGAGTATGAAAAACTCACTCAAAAAACACAGAGCAAGGATGCAGCCCTCCCCATGACCCAGAACAGAGCTTTGCAGCTGCTGTTTGACCTTCGCTATCTCAGTGGCACTCTAGGGTCCCGCCTTGAAGAGGGCAGGAGTTCCCGCTCTCAGCAAGACCCAAGGATCCAGCAGGTCTGCGACTCCCTGGAAAGTCACATTGATCCATTTGACCTGGATGTTTTCACTCCACATGTGAACAGCAACCTGAACCGACTCTCACAGAGGACCTCTGTGCTTTTAGGACTGTTGTCTGGTACGGAGAAGCAGTTTACCTCTAGGACCAACAATATCAACTCTCAGGAACCGTACAACATCCTTCCTTTGGCAAGCAGCCAGATCCGGTTTGGTTTGCTGCCACAGAGCATGACAAACTCTCGGAAGACTAATTCAGCCACGCATGGAGCAGATATCACCAGACCACTGTTTTTCATGGCCTAGCAGAAGAGCTGCTGGATCTCAAGGCAATAGgtGGCTCCCTCTTCTGCTTCTGCTCCACAGGACAGTTTCCGCCCAGGAAATCTCTTCAGGCAGTTAGCCAATCAAGAAGAGGAATCCGCAGCCCCTTCTCTCTTTAAATTAGGCTGGCTTTCTGGCATGGccaaataaacttttattaaaaaattgctatttttttaatccgCATACAACactatgtaaaataatatttaaaatacattttgaaatgttgaaa

Function

symbol description
cog1 Predicted to act upstream of or within intra-Golgi vesicle-mediated transport and protein transport. Predicted to be located in membrane. Predicted to be part of Golgi transport complex. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIg. Orthologous to human COG1 (component of oligomeric golgi complex 1).

NR:

description
PREDICTED: conserved oligomeric Golgi complex subunit 1-like isoform X1

GO: NA

KEGG:

id description
K20288 COG1; conserved oligomeric Golgi complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233916.1 False 3081 mRNA 0.53 14 14111547 14119590
XM_043233917.1 True 3126 mRNA 0.53 15 14111547 14119590

Neighbor

gene id symbol gene type direction distance location
gna13b LOC107654495,LOC107721501,LOC107601276,LOC107688114,LOC107719992,LOC107590387,LOC108438014 coding downstream 9589 14085488 ~ 14101958 (-)
prkar1aa prkar1aa,prkar1a,LOC107654492,LOC107721504,LOC107590390,LOC106606198,LOC108274040 coding downstream 54825 14049482 ~ 14056722 (-)
rac3a rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding downstream 62848 14044308 ~ 14048699 (-)
gps1 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 68045 14036320 ~ 14043502 (-)
csnk1da csnk1d,LOC107601268,LOC107590392,LOC107688108,LOC107654491,LOC103024472,LOC108259482,LOC104935249 coding downstream 85477 14003339 ~ 14026070 (-)
rogdi rogdi,LOC107719995,LOC107688116,LOC107654499,LOC107721519,LOC107601278 coding upstream 2549 14122139 ~ 14126578 (-)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 coding upstream 7213 14126803 ~ 14136702 (-)
ppl ppl,LOC107601282,LOC107654502,LOC107688119,LOC107590382 coding upstream 18782 14138372 ~ 14150970 (-)
rrn3 rrn3,LOC107654503,LOC107601284,LOC107590381,LOC107688121,LOC107721468 coding upstream 76188 14195778 ~ 14202180 (-)
mpv17l si:dkeyp-72e1.7,LOC107654467,LOC107721477,LOC107720000,LOC107590380,LOC107688122,LOC103040893,LOC108438006 coding upstream 86764 14206354 ~ 14208231 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding downstream 51055 14059581 ~ 14060492 (-)
LOC122342150 NA non-coding downstream 181270 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 212615 13897631 ~ 13898932 (-)
G19872 NA non-coding downstream 477762 13633559 ~ 13633785 (-)
G19811 NA non-coding downstream 753758 13357579 ~ 13357789 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 100495 14220085 ~ 14221797 (-)
G20202 NA non-coding upstream 265771 14385361 ~ 14388398 (-)
G20212 NA non-coding upstream 314115 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 329885 14449475 ~ 14451028 (-)
G20231 NA non-coding upstream 483604 14603194 ~ 14604214 (-)
G19933 NA other downstream 305569 13805368 ~ 13805978 (-)
gng13b NA other downstream 318945 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 1043357 13005996 ~ 13068190 (-)
G19700 NA other downstream 1064053 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 1348457 12681990 ~ 12763090 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 83340 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 315557 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 1001216 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 1022227 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1479180 15598770 ~ 15600348 (-)

Expression


Co-expression Network