rundc1 (LOC107729555,LOC107551167,LOC107687639,LOC107680882,LOC107561358)


Basic Information

Item Value
gene id rundc1
gene name LOC107729555,LOC107551167,LOC107687639,LOC107680882,LOC107561358
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10798013 ~ 10803832 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235857.1
CTCAGTCGTTTCGATTACGTTGCAATGTTTTCCGAAGACGTAAGTATTACACTGCGCTGCACCTGCTAAAGCAGCGGCTGCGTATATTCTGAATTCACGTTAAACAGTAGCGCATCAATTAAGTTGGTCGAGGTTGTTTTCGGTAAAAGACAGCCAGGCTGTCTGCCTCAGCTATCAATCAAATGTCGACGGAGGATCTGTCCACTTCCGACAGCGAAGCTGCCTTCGCCGGAGCTGGGGAGCGCTGGGCGCCGGTGGGAGCCGTGGCCAACCCGGAGGATGAGCAGTGGAAGCGGGGCACGCAGGCTGGCTCTGCGCCGTCCAGCGATACAGACATGGTATCTAGATTGAGAAAGCTGGAGGATGAGCAGGAGCAGCTGAACTCATCGCTCCTCGCGTTGACGTCTCACTTCGCTCAAGTGCAGTTTCGGCTGAAACAGATCGTCCACGCGCAGAGCGACGAGAAAGAGAGGATGCTGTTGGAGCTGGAGGAGTTTGCCTTCAAAGGCTGCCCTCATGTCATAGGCTGCAGGGCACAGGATGCTCAGATGCTGGAAAACTCTGATGAATTGagtgaaagagagaaaagggaaCGCTTGGAAGCTCAGAGAAAGAAGCAGAAGGAGCTGATTTTCCAGCTGAAGACTCAACTCGATGACCTGGAGCGCTTTGCCTACCAGGAGGGCAGCTATGACTCACTGCCTCAGTCTGTGGTCATGGAGAGACAGAGGGTGATCATTGATGAGCTGATTAAGAAGCTGGACGTGAACCTGAATGAAGACATCGGGAACCTCACTCCAGAGGAGCTCCGACAGAGAGTGGACGCTGCTATAGCTCAGATAGTCAACCCGGCTCGAGTCAAGGAGCAGCTGGTTGAGCAGCTAAAGACCCAAATCAGAGACCTGGAGATGTTCATTAACTTCATACAGGACGAAGTGGGAAACCCTCTGTTAAATGATGGTGTGAAGAGCCAACAGGCTCGTGCTCCCGGACCAAACACTGGAGCCACTGGAGGAATGAAGCGAGTGGATCCCGAACAGGCCCAGAGGATGCGGGAAACCGGGCTTCAGCTGATCCAGAGAGCCTTAGCGGTGCTGCAGATCTTTGCTCTGAGTCAGTTCGGGTGCGCCGCGGGTCACGTGCCCCAGAGCGTGTGGTCTCAGGGCGGCGAGGCGCAGGATTACGGCCCCCTGCTGCAGAAACTGGAAGCAGCCGTGGAGCGCGTACGTCTGCAAGCATCCCGCCAGCAGCCCAGCTCTCAGGACGAACACGTGGTCAGCTACTCCGCCTGCCTGACACCCGAAGGGCCTCGAGATGAACTCACCGCTTCTGTGCGTAAAGATCTGGCCCTGGCGCTCCGGGACCTTCTCGCCCACGGACTGTACTCTCCTTCTCAAGGCATGAGCCTGGTCCTCGCCCCCATTTCCTGCCTGCTGCCCTTCAGCGCTTCTCCCCAGACCCTGCATCCCTGGGAACTTTTCATCAAGTACTATCATTCCAAAAATGGCCAGGCGTTCGTGGAGTCGCCCGCCCGCCAGCTCTCTCAGTCCTTCAGTTTACCCGTGGGGGGCGGTCCTGTGACTGTCACGCCCAAGCAGTCTCTGTTATGGGCCATCCACACGGTTCTCAAAGAGCATGGGCGATTTAAGCGCAGCGCGGACTCTGAGTTTAAGGCCTTAGTGTGCATGGCGCTCAATGAGCAGAGGCTTGTGTCCTGGCTCAACCTGCTGTGCAAGTCTGGGACGCTCATACACTCTCACTACCAGCCCTGGAGCTACATGGCCCAGACGGGCTTCGAAGGTGCCCTTCGTATCTTGGGCCGTCTCAGCCATCTCAAATTCAGCCTTCCTGTAGATTTGGCTGTCAGACAGCTTAAAAATATCAAAGATGCTTTCTAAGCTAAAGAAGTAGATGGAAATTTTGACGGATTTTTGATCTCCCAGCCTTcgtaatcttaaaaaaaataacactaatataaaaaaacaccaacattacacatgacacaaaatgaaatttaaaagatGCTCCCTGATCAACAGGTACACTGGAATTAAATATTTGGAAAAGAAGCAACTCGTGCACTTTCTTGAGACTGTTGAGTCTAATGCCTCTTGTCTCTAAactgaagatgatgatgagTCAAGGCAGGTTTTAATATGCTGCATTGGTCACAACTTAAAGGAAATATGCTCAGTTTAGTGACCCTGAGCTTGTAACTGCCTCCACATAACCTTTGAGGCGAATTGTTATGTTAAGCTTTTACCAAAATCAACCACTACATAGAAGAATGAGTTATTACTTGAAATCTTTTCAAGGGCCATTGCATATGTTTGAGATACACTACAGTAtctatattacatatatatatacacacacacacacacacacacacacagagtttaaAAATAGTGACTAGTGACAATGCTTTAATTACActctttttgttataaatgtatgtagCCAAATACACTCATTTTCTGAGCTTGTACTACATTATTGTACAGTGGTTCGCAGACAAATCACAAGACGTTTTGATTTAAGCTTGCGTTTCATTTCCATTAATAAGGGTAGCTGCATTTCAAACAGTGGCATAGCGAGTATCTTTGGTTTATTGCTGCTCTGTGTTGGTATCGCTTTCTGAGGAGACCATGCATGCTGGTGAGACCTCACTTAGGTCAAGCAACACACTCAGGTCATTCTGAACAAACACGGAGATGTACATTGGTGTTTGTAAATCATCTGAAAACCACTGCTCTCCCTAACTTCCTTTCCACAGCCTGGTGACACTTTAAAACTGATTGTAGAACACCGCATCTTGTGTTTGCGCTGCCCGCTCGCTGCTGCCGCCGGAGGAAATGCACAGCAAGTGAACTGAATGAAGTAGAGGTCATTGAGCACATTTGCTGAATACGAGTCTGATATGCTGTGCATTGTCACTGACTGAATTATTTATGGCCTGTTATGCTGTGCCAGCATTCAGAGGCTCTGCTTGAATACCTGCTGTTTCCGTGTCTTGTCAATCCTTGTTTACTGCTCTGAAATATTGAATGTACAATCCTTGGAATTATATCCTGCTACTGTAACTGATCTGATTCCAGATTCCTTAAACCACTCTGAATATTGATTTACTGAAAGTAAGAAGGGACTGTTCGTTACCCCACATCGTGGCAATGGATTTTATATTGGGCGTATTTCTCTGCACCATTACAATATAGAGGAATggttgtaatgcatttattaggGCGGTTCAATTAGCCCTTATTTAATGTAGTATTTTTCCCCTCCTgctttgcctttttttataGTGATATATCAACCTGAATACATGCTTGGCCTATTTTGATGTCCATTCGTTTGTTTTGTCCTTACATATCTATTTAAGAAATTGTCGTCTTTGTACCTCTTCTTAGAAAGAAATAgattttcaattatttcaatattgATTTCAAATCAGTGTCAATTACATTCCCTTTTATAAAATTTGTGCCATCATTTTTGAATGTAATGATGGTCTCTTTTCAGTGATTAAATGTTCTTGATGCTCAATGGA
>XM_043235858.1
CTCAGTCGTTTCGATTACGTTGCAATGTTTTCCGAAGACGTAAGTATTACACTGCGCTGCACCTGCTAAAGCAGCGGCTGCGTATATTCTGAATTCACGTTAAACAGTAGCGCATCAATTAAGTTGGTCGAGGTTGTTTTCGGTAAAAGACAGCCAGGCTGTCTGCCTCAGCTATCAATCAAATGTCGACGGAGGATCTGTCCACTTCCGACAGCGAAGCTGCCTTCGCCGGAGCTGGGGAGCGCTGGGCGCCGGTGGGAGCCGTGGCCAACCCGGAGGATGAGCAGTGGAAGCGGGGCACGCAGGCTGGCTCTGCGCCGTCCAGCGATACAGACATGGTATCTAGATTGAGAAAGCTGGAGGATGAGCAGGAGCAGCTGAACTCATCGCTCCTCGCGTTGACGTCTCACTTCGCTCAAGTGCAGTTTCGGCTGAAACAGATCGTCCACGCGCAGAGCGACGAGAAAGAGAGGATGCTGTTGGAGCTGGAGGAGTTTGCCTTCAAAGGCTGCCCTCATGTCATAGGCTGCAGGGCACAGGATGCTCAGATGCTGGAAAACTCTagtgaaagagagaaaagggaaCGCTTGGAAGCTCAGAGAAAGAAGCAGAAGGAGCTGATTTTCCAGCTGAAGACTCAACTCGATGACCTGGAGCGCTTTGCCTACCAGGAGGGCAGCTATGACTCACTGCCTCAGTCTGTGGTCATGGAGAGACAGAGGGTGATCATTGATGAGCTGATTAAGAAGCTGGACGTGAACCTGAATGAAGACATCGGGAACCTCACTCCAGAGGAGCTCCGACAGAGAGTGGACGCTGCTATAGCTCAGATAGTCAACCCGGCTCGAGTCAAGGAGCAGCTGGTTGAGCAGCTAAAGACCCAAATCAGAGACCTGGAGATGTTCATTAACTTCATACAGGACGAAGTGGGAAACCCTCTGTTAAATGATGGTGTGAAGAGCCAACAGGCTCGTGCTCCCGGACCAAACACTGGAGCCACTGGAGGAATGAAGCGAGTGGATCCCGAACAGGCCCAGAGGATGCGGGAAACCGGGCTTCAGCTGATCCAGAGAGCCTTAGCGGTGCTGCAGATCTTTGCTCTGAGTCAGTTCGGGTGCGCCGCGGGTCACGTGCCCCAGAGCGTGTGGTCTCAGGGCGGCGAGGCGCAGGATTACGGCCCCCTGCTGCAGAAACTGGAAGCAGCCGTGGAGCGCGTACGTCTGCAAGCATCCCGCCAGCAGCCCAGCTCTCAGGACGAACACGTGGTCAGCTACTCCGCCTGCCTGACACCCGAAGGGCCTCGAGATGAACTCACCGCTTCTGTGCGTAAAGATCTGGCCCTGGCGCTCCGGGACCTTCTCGCCCACGGACTGTACTCTCCTTCTCAAGGCATGAGCCTGGTCCTCGCCCCCATTTCCTGCCTGCTGCCCTTCAGCGCTTCTCCCCAGACCCTGCATCCCTGGGAACTTTTCATCAAGTACTATCATTCCAAAAATGGCCAGGCGTTCGTGGAGTCGCCCGCCCGCCAGCTCTCTCAGTCCTTCAGTTTACCCGTGGGGGGCGGTCCTGTGACTGTCACGCCCAAGCAGTCTCTGTTATGGGCCATCCACACGGTTCTCAAAGAGCATGGGCGATTTAAGCGCAGCGCGGACTCTGAGTTTAAGGCCTTAGTGTGCATGGCGCTCAATGAGCAGAGGCTTGTGTCCTGGCTCAACCTGCTGTGCAAGTCTGGGACGCTCATACACTCTCACTACCAGCCCTGGAGCTACATGGCCCAGACGGGCTTCGAAGGTGCCCTTCGTATCTTGGGCCGTCTCAGCCATCTCAAATTCAGCCTTCCTGTAGATTTGGCTGTCAGACAGCTTAAAAATATCAAAGATGCTTTCTAAGCTAAAGAAGTAGATGGAAATTTTGACGGATTTTTGATCTCCCAGCCTTcgtaatcttaaaaaaaataacactaatataaaaaaacaccaacattacacatgacacaaaatgaaatttaaaagatGCTCCCTGATCAACAGGTACACTGGAATTAAATATTTGGAAAAGAAGCAACTCGTGCACTTTCTTGAGACTGTTGAGTCTAATGCCTCTTGTCTCTAAactgaagatgatgatgagTCAAGGCAGGTTTTAATATGCTGCATTGGTCACAACTTAAAGGAAATATGCTCAGTTTAGTGACCCTGAGCTTGTAACTGCCTCCACATAACCTTTGAGGCGAATTGTTATGTTAAGCTTTTACCAAAATCAACCACTACATAGAAGAATGAGTTATTACTTGAAATCTTTTCAAGGGCCATTGCATATGTTTGAGATACACTACAGTAtctatattacatatatatatacacacacacacacacacacacacacagagtttaaAAATAGTGACTAGTGACAATGCTTTAATTACActctttttgttataaatgtatgtagCCAAATACACTCATTTTCTGAGCTTGTACTACATTATTGTACAGTGGTTCGCAGACAAATCACAAGACGTTTTGATTTAAGCTTGCGTTTCATTTCCATTAATAAGGGTAGCTGCATTTCAAACAGTGGCATAGCGAGTATCTTTGGTTTATTGCTGCTCTGTGTTGGTATCGCTTTCTGAGGAGACCATGCATGCTGGTGAGACCTCACTTAGGTCAAGCAACACACTCAGGTCATTCTGAACAAACACGGAGATGTACATTGGTGTTTGTAAATCATCTGAAAACCACTGCTCTCCCTAACTTCCTTTCCACAGCCTGGTGACACTTTAAAACTGATTGTAGAACACCGCATCTTGTGTTTGCGCTGCCCGCTCGCTGCTGCCGCCGGAGGAAATGCACAGCAAGTGAACTGAATGAAGTAGAGGTCATTGAGCACATTTGCTGAATACGAGTCTGATATGCTGTGCATTGTCACTGACTGAATTATTTATGGCCTGTTATGCTGTGCCAGCATTCAGAGGCTCTGCTTGAATACCTGCTGTTTCCGTGTCTTGTCAATCCTTGTTTACTGCTCTGAAATATTGAATGTACAATCCTTGGAATTATATCCTGCTACTGTAACTGATCTGATTCCAGATTCCTTAAACCACTCTGAATATTGATTTACTGAAAGTAAGAAGGGACTGTTCGTTACCCCACATCGTGGCAATGGATTTTATATTGGGCGTATTTCTCTGCACCATTACAATATAGAGGAATggttgtaatgcatttattaggGCGGTTCAATTAGCCCTTATTTAATGTAGTATTTTTCCCCTCCTgctttgcctttttttataGTGATATATCAACCTGAATACATGCTTGGCCTATTTTGATGTCCATTCGTTTGTTTTGTCCTTACATATCTATTTAAGAAATTGTCGTCTTTGTACCTCTTCTTAGAAAGAAATAgattttcaattatttcaatattgATTTCAAATCAGTGTCAATTACATTCCCTTTTATAAAATTTGTGCCATCATTTTTGAATGTAATGATGGTCTCTTTTCAGTGATTAAATGTTCTTGATGCTCAATGGA

Function

NR:

description
PREDICTED: RUN domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K24786 RUNDC1; RUN domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235857.1 True 3550 mRNA 0.47 6 10798013 10803832
XM_043235858.1 False 3541 mRNA 0.47 5 10798013 10803832

Neighbor

gene id symbol gene type direction distance location
rpl27 rpl27,LOC107551168 coding downstream 741 10794230 ~ 10797272 (-)
slc25a39 LOC107729547,LOC107687641,LOC107551169,LOC107680864,LOC107561357 coding downstream 5221 10783232 ~ 10792792 (-)
rpl3 LOC107680866,LOC103374755,LOC107687640 coding downstream 15422 10778910 ~ 10782591 (-)
LOC122342196 NA coding downstream 17817 10780102 ~ 10780196 (-)
LOC122342195 NA coding downstream 18778 10779101 ~ 10779235 (-)
grna NA coding upstream 1229 10805061 ~ 10817240 (-)
bcat2 bcat2,LOC107687634,LOC107729480,LOC107680854,LOC107561362 coding upstream 18616 10822448 ~ 10834477 (-)
fgf21 LOC107561365,LOC107551145,LOC107729479,LOC107687650 coding upstream 38801 10842633 ~ 10845916 (-)
slc1a9 slc1a9,LOC107729473,LOC107551162,LOC107680867,LOC108434930 coding upstream 43636 10847468 ~ 10865872 (-)
ppfia3 ppfia3,LOC107551161,LOC107563979,LOC107732887,LOC107729434 coding upstream 81866 10885698 ~ 10920560 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 28615 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 100474 10689164 ~ 10697539 (-)
LOC122334019 NA non-coding downstream 102509 10689419 ~ 10695504 (-)
G18771 NA non-coding downstream 119433 10677457 ~ 10678580 (-)
G18745 NA non-coding downstream 218873 10574167 ~ 10579140 (-)
G19108 NA non-coding upstream 529924 11333756 ~ 11335800 (-)
G19117 NA non-coding upstream 606503 11410335 ~ 11410716 (-)
G19375 NA non-coding upstream 965890 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 1040182 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 1063175 11867007 ~ 11871906 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 401672 10394314 ~ 10396341 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 587397 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 1335108 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 1659924 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 1790570 8992714 ~ 9007443 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 208104 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 608153 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 890440 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 908988 11712820 ~ 11728001 (-)
G19383 NA other upstream 1049916 11853748 ~ 11880959 (-)

Expression


Co-expression Network