ramp2 (LOC107654510,LOC107721488,LOC107601292,LOC107590449)


Basic Information

Item Value
gene id ramp2
gene name LOC107654510,LOC107721488,LOC107601292,LOC107590449
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14303150 ~ 14309441 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235866.1
gcaagagaaaaagtgacagtgaagataATGTTGTTGAAATTCAGAGAGACAGATGATGGCAACATTGGGATATAATAGACTGCCCGCCCCTTCTGCAATGTCTCTCCATTTGTGAATCCACCACCCCTTTAAGGAAATGAGCACATCCTGTTGTTTTAATAGAGTCTTCCTGTTGAAGAGTTCATACATGTGATATTTGGAAGCTGAGGTGGACAGGCAGATAGAACTACCactgcattaaaacataatgGCGCACATATCTACTTCGAAACCAGCAGGGACTCTTCTGTTTTGGGtctCCCTGTGTCTAATGGTCTCAACTACGCTGACCCTGGTACCAAACGAACAGAAAGAAACCGTGAGACGAACTACATTAACCGTGCCGACAGAAGTACAAACCACTGCATACACCAGAGCAGgtaTCGGCTATGGAGATGGAGGAACATTTGGCTGTGGTAACAAGAGCATCTGTGACACATACTGTTCATTTTGTATGAACTATTCCTTGATAAGTCAAGAATGCTACGGACTGCTGGTGCAGTTGTGTCAGTATAATTTTGTTGCTGCTATGGACTCCATGAACAGTACTGACTGGTGTTCactggaaaaagtaaaaagtGCATACAACAACTTCACTGTGTGTACTGAGACTGTTGCCGAATGTCTGCTGCTTCCCTGGCCGAATCAGTTGGTTGAACAGATGTTTGTGAACATCCACTCCACCTATTTTCACGATTGCCCCACAGAGGCACTGCGAGACCCCCCTCCCAGCATCATCCTTGCCCTTGTGATGACCCCCATATGCCTAATCCCCGTTATGGTGGTCCTAGTTGTTCTCAAGACTAAGAATGGAGACAGGAGGTCATAGGCGTCCAGGTGCAAGAAGATGTTACTTAGTCATTCTTCTCCTCTATTTTTTCTTCATCCAGTATCCCACCCAGGGATAATGTCCTGGCTCAACGCTCCACAGTCATTGCGCACCTGGGCGTCTCCAGGACTGACTAAACCAGGATGGAGGATGTGCATTTGTTCTGGGGGTGACCTCTGACTGGAAAATGTTACTGTAATTTAGTGGAACATTTGTTGTCTAGAAATGCAAATTTATCATGAACATACAGCTACTGCGCATGACAGATATTTCACAACCAGCATTATTATCTCCAAAGTGCACATATAGGCATCGTTGTCTTCTGGATTTAAATTCATAATCcaatgaaatgtgaaatgtaaagaGATTCGTTTGAAGTATTCACACAAATTGTGTACATGACCAGATGCAGAACCACAAACTCATTTGAGTGTCCATTTTATGCACTGTAAGAAATCTTTAACCCGTGTTTTAATGTAGGTTTTGATGTTAGTTAGGTGACAAGAGCTGTTTAGCTGACTCTGGGAATAATGTCTTCGtgatttcatttctattttgacACAAGTCATAAcgtttgactttttaaatttattatgaAAGCTATTGGGGAATTAAGCATAAACAAATCAATCTGAATGCATGACAAAACAAAGCCGGATGAAAGCCACCAATTTCAATAGGCAGCTTAttaaatatctgtttatttatctaaGTTAATGACATGCGGGTGTCTCTGAAAAGTAAACGTTTAAGAGGAAAGGGGATGAGATTGCAATGTCCACTTACATtgtccatttttaattttactctgCCCCTCACAAAGAACTGCAGCGTACTATGATTACAATATAATTACTGTATCAATGTAGTCACATGAACGAGACTGGCAttactttgtgttttataataacatCAGTAAGCGTTTATGAAGGATGAATCTTACACATGTCTGAATATAGTATCATCTATGCCTGCAGatcgttttctctttttttatagaCCAACCATTTTAAGAGCCTGTgaactattttataattttatacttCACCTCCTACTTTGATTGgacatgtgtttttaatataattaaaccaCACCTTTTACCTAGA
>XM_043235867.1
agaacgagagagagagatagcaagagaaaaagtgacagtgaagataATGTTGTTGAAATTCAGAGAGACAGATGATGGCAACATTGGGATATAATAGACTGCCCGCCCCTTCTGCAATGTCTCTCCATTTGTGAATCCACCACCCCTTTAAGGAAATGAGCACATCCTGTTGTTTTAATAGAGTCTTCCTGTTGAAGAGTTCATACATGTGATATTTGGAAGCTGAGGTGGACAGGCAGATAGAACTACCactgcattaaaacataatgGCGCACATATCTACTTCGAAACCAGCAGGGACTCTTCTGTTTTGGGtctCCCTGTGTCTAATGGTCTCAACTACGCTGACCCTGGTACCAAACGAACAGAAAGAAACCAGACGAACTACATTAACCGTGCCGACAGAAGTACAAACCACTGCATACACCAGAGCAGgtaTCGGCTATGGAGATGGAGGAACATTTGGCTGTGGTAACAAGAGCATCTGTGACACATACTGTTCATTTTGTATGAACTATTCCTTGATAAGTCAAGAATGCTACGGACTGCTGGTGCAGTTGTGTCAGTATAATTTTGTTGCTGCTATGGACTCCATGAACAGTACTGACTGGTGTTCactggaaaaagtaaaaagtGCATACAACAACTTCACTGTGTGTACTGAGACTGTTGCCGAATGTCTGCTGCTTCCCTGGCCGAATCAGTTGGTTGAACAGATGTTTGTGAACATCCACTCCACCTATTTTCACGATTGCCCCACAGAGGCACTGCGAGACCCCCCTCCCAGCATCATCCTTGCCCTTGTGATGACCCCCATATGCCTAATCCCCGTTATGGTGGTCCTAGTTGTTCTCAAGACTAAGAATGGAGACAGGAGGTCATAGGCGTCCAGGTGCAAGAAGATGTTACTTAGTCATTCTTCTCCTCTATTTTTTCTTCATCCAGTATCCCACCCAGGGATAATGTCCTGGCTCAACGCTCCACAGTCATTGCGCACCTGGGCGTCTCCAGGACTGACTAAACCAGGATGGAGGATGTGCATTTGTTCTGGGGGTGACCTCTGACTGGAAAATGTTACTGTAATTTAGTGGAACATTTGTTGTCTAGAAATGCAAATTTATCATGAACATACAGCTACTGCGCATGACAGATATTTCACAACCAGCATTATTATCTCCAAAGTGCACATATAGGCATCGTTGTCTTCTGGATTTAAATTCATAATCcaatgaaatgtgaaatgtaaagaGATTCGTTTGAAGTATTCACACAAATTGTGTACATGACCAGATGCAGAACCACAAACTCATTTGAGTGTCCATTTTATGCACTGTAAGAAATCTTTAACCCGTGTTTTAATGTAGGTTTTGATGTTAGTTAGGTGACAAGAGCTGTTTAGCTGACTCTGGGAATAATGTCTTCGtgatttcatttctattttgacACAAGTCATAAcgtttgactttttaaatttattatgaAAGCTATTGGGGAATTAAGCATAAACAAATCAATCTGAATGCATGACAAAACAAAGCCGGATGAAAGCCACCAATTTCAATAGGCAGCTTAttaaatatctgtttatttatctaaGTTAATGACATGCGGGTGTCTCTGAAAAGTAAACGTTTAAGAGGAAAGGGGATGAGATTGCAATGTCCACTTACATtgtccatttttaattttactctgCCCCTCACAAAGAACTGCAGCGTACTATGATTACAATATAATTACTGTATCAATGTAGTCACATGAACGAGACTGGCAttactttgtgttttataataacatCAGTAAGCGTTTATGAAGGATGAATCTTACACATGTCTGAATATAGTATCATCTATGCCTGCAGatcgttttctctttttttatagaCCAACCATTTTAAGAGCCTGTgaactattttataattttatacttCACCTCCTACTTTGATTGgacatgtgtttttaatataattaaaccaCACCTTTTACCTAGA
>XM_043235868.1
ttcagttgaaGCCTGACTGGAaaagagtgagagtgagtgagcgagagagagagaaaggcagcCAGAGGTGGAGCGTTATTACGTGGGAAAATTAAAGCGTTCTCGATCAGCAGCTTTCTGAACATCTGGTAACCGTGATTGTATGTGGTGACGGCGCATCACGCTTCCACCCGTCGCGTTTCCTGTTATGCCTCGCGTTCTTCGGTGGAAAAGTTCAGACACTTTCAGCGGCGGGTTGAGAGCAGCTCGCCAGCGCTCGTTTGTTCTGATATGAGGGTATCGTTCGGCTTTTTAGGCGTCTTTCTGTCTGTTATCTGTGgtaTCGGCTATGGAGATGGAGGAACATTTGGCTGTGGTAACAAGAGCATCTGTGACACATACTGTTCATTTTGTATGAACTATTCCTTGATAAGTCAAGAATGCTACGGACTGCTGGTGCAGTTGTGTCAGTATAATTTTGTTGCTGCTATGGACTCCATGAACAGTACTGACTGGTGTTCactggaaaaagtaaaaagtGCATACAACAACTTCACTGTGTGTACTGAGACTGTTGCCGAATGTCTGCTGCTTCCCTGGCCGAATCAGTTGGTTGAACAGATGTTTGTGAACATCCACTCCACCTATTTTCACGATTGCCCCACAGAGGCACTGCGAGACCCCCCTCCCAGCATCATCCTTGCCCTTGTGATGACCCCCATATGCCTAATCCCCGTTATGGTGGTCCTAGTTGTTCTCAAGACTAAGAATGGAGACAGGAGGTCATAGGCGTCCAGGTGCAAGAAGATGTTACTTAGTCATTCTTCTCCTCTATTTTTTCTTCATCCAGTATCCCACCCAGGGATAATGTCCTGGCTCAACGCTCCACAGTCATTGCGCACCTGGGCGTCTCCAGGACTGACTAAACCAGGATGGAGGATGTGCATTTGTTCTGGGGGTGACCTCTGACTGGAAAATGTTACTGTAATTTAGTGGAACATTTGTTGTCTAGAAATGCAAATTTATCATGAACATACAGCTACTGCGCATGACAGATATTTCACAACCAGCATTATTATCTCCAAAGTGCACATATAGGCATCGTTGTCTTCTGGATTTAAATTCATAATCcaatgaaatgtgaaatgtaaagaGATTCGTTTGAAGTATTCACACAAATTGTGTACATGACCAGATGCAGAACCACAAACTCATTTGAGTGTCCATTTTATGCACTGTAAGAAATCTTTAACCCGTGTTTTAATGTAGGTTTTGATGTTAGTTAGGTGACAAGAGCTGTTTAGCTGACTCTGGGAATAATGTCTTCGtgatttcatttctattttgacACAAGTCATAAcgtttgactttttaaatttattatgaAAGCTATTGGGGAATTAAGCATAAACAAATCAATCTGAATGCATGACAAAACAAAGCCGGATGAAAGCCACCAATTTCAATAGGCAGCTTAttaaatatctgtttatttatctaaGTTAATGACATGCGGGTGTCTCTGAAAAGTAAACGTTTAAGAGGAAAGGGGATGAGATTGCAATGTCCACTTACATtgtccatttttaattttactctgCCCCTCACAAAGAACTGCAGCGTACTATGATTACAATATAATTACTGTATCAATGTAGTCACATGAACGAGACTGGCAttactttgtgttttataataacatCAGTAAGCGTTTATGAAGGATGAATCTTACACATGTCTGAATATAGTATCATCTATGCCTGCAGatcgttttctctttttttatagaCCAACCATTTTAAGAGCCTGTgaactattttataattttatacttCACCTCCTACTTTGATTGgacatgtgtttttaatataattaaaccaCACCTTTTACCTAGA

Function

NR:

description
PREDICTED: receptor activity-modifying protein 1-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K08448 RAMP2; receptor activity modifying protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235866.1 False 1974 mRNA 0.40 6 14303150 14309422
XM_043235867.1 True 1990 mRNA 0.40 6 14303150 14309441
XM_043235868.1 False 1874 mRNA 0.41 4 14303150 14305607

Neighbor

gene id symbol gene type direction distance location
abcc6b.2 abcc6b.2,LOC107721491,LOC107590377,LOC107720004,LOC107688123,LOC107601225,LOC108437999 coding downstream 10207 14273386 ~ 14292943 (-)
myh11b myh11b,myh11,LOC107654508,LOC107721492,LOC107601223,LOC107590431 coding downstream 50201 14239107 ~ 14252949 (-)
mpv17l si:dkeyp-72e1.7,LOC107654467,LOC107721477,LOC107720000,LOC107590380,LOC107688122,LOC103040893,LOC108438006 coding downstream 94919 14206354 ~ 14208231 (-)
rrn3 rrn3,LOC107654503,LOC107601284,LOC107590381,LOC107688121,LOC107721468 coding downstream 100970 14195778 ~ 14202180 (-)
ppl ppl,LOC107601282,LOC107654502,LOC107688119,LOC107590382 coding downstream 152180 14138372 ~ 14150970 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding upstream 18765 14328206 ~ 14355988 (-)
tubg1 tubg1,LOC107721485 coding upstream 95533 14404974 ~ 14415597 (-)
LOC122341422 LOC107654457,LOC107601299,LOC107720081,LOC107688136,LOC107721482 coding upstream 150381 14459822 ~ 14462247 (-)
LOC122341419 LOC107601299,LOC107721482,LOC107654457,LOC107688136,LOC107720081,LOC107590425 coding upstream 152806 14462247 ~ 14556085 (-)
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 264321 14573762 ~ 14581763 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding downstream 81353 14220085 ~ 14221797 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding downstream 242658 14059581 ~ 14060492 (-)
LOC122342150 NA non-coding downstream 372873 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 404218 13897631 ~ 13898932 (-)
G19872 NA non-coding downstream 669365 13633559 ~ 13633785 (-)
G20202 NA non-coding upstream 75920 14385361 ~ 14388398 (-)
G20212 NA non-coding upstream 124264 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 140034 14449475 ~ 14451028 (-)
G20231 NA non-coding upstream 293753 14603194 ~ 14604214 (-)
G20230 LOC107674595,LOC107720017,LOC107721479,LOC107601304,LOC107654524,LOC107590367 non-coding upstream 295588 14605029 ~ 14657481 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 98800 14202930 ~ 14204350 (-)
G19933 NA other downstream 497172 13805368 ~ 13805978 (-)
gng13b NA other downstream 510548 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 1234960 13005996 ~ 13068190 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 125706 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 811365 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 832376 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1289329 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 2141699 16451140 ~ 16451800 (-)

Expression


Co-expression Network