abi3a (LOC107758490,LOC107583075,LOC107695026)


Basic Information

Item Value
gene id abi3a
gene name LOC107758490,LOC107583075,LOC107695026
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12498774 ~ 12508792 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235978.1
aatggcaGGACGTTCTTGTTTCCGCCTGTTCCTCGAGCAGATCTGTGCTTGCAGCATCAAAGCAGAACTTGCGTTTGCTGTCAGAGGAAGGCAGCGACGGTTGGGGGGGTCCGAGTCTGACTGACAGATATCAGTAGACTTCTGTCGCGCGGAGGTTTCCGGAATCGTGCCTGAACCGTCTGTCATTCCGTCGCGCGATGAAGGACCAAAACTACTCCGAAGAAGTTACAAAAATACTGGAGGAGGCCCCCTCCGCTCGCAAAGCACTTTTAGACAACTACAACAATTTATACAAAGTAGCGGAGTACTGCGAGAGCAACTACACGCAGTGTGGAAATGACACCACCAAAGCCCTGGAGGAGACCAAGGCCTTCACTACTCAGTCCTTGGCTAGTGTGGCTTATCAGATCAGCTCTATGGCCACCAATGTGCTCAAGCTTCTGGACGCACAGACCCTGCAGCTCCGCAAGATAGAGTCGTCCATCAACCAGATCGGACAGACAGTGGACATGCACAGGGAGAAGGTGGCCCGCAGAGAGATCGGCGCTTTCACAGTTGCCAAGAGAGTTCCACGCAGTCATAAGGTTGTCCCCccagcaaaaaataaagaagccaAGATCAAGTATTCCCGCACACCCATCTCTTTCTCTAGCCTGGACTCAGTCGGCCATGGCATGAAGATTTGTTTTCAGGATTCTGGCCAGCCGCAGCTAAAAACAGCGACCATGACTCGGAGCGGCAGCACACTGAGCCGAAGCAGCCGTCCACCTCCTGAGCCTGTCCAGTGTCCAGTGGCGCCCGGTCTCTCTCATGGAGCGTCCCTCACCTCCCTCAATGACAAGTCTATTGCTTCGAGTTTTGGTAAAGCCGTGCCGCCTCCTGTAGTGCCCAGCTGGCCCACCAACCCTGAGGTTGACATCATCAACACGCTGCTGGGTGAAGAGCCTCCTCCACCGCCCCCACTGATGGAGACAGAGGGCGAACAGGATCAGGGGGTGGAGAGCGGCccacctccaccacctcctcctcccctCGACTGCAGCAACATCCCCCCACCTCCCCCCATGCCCAGCTCAGTGAATACTCCTGATCCCAGCAGCCTCGTGACCATACCTCCtcctccaccagctccacctCTTGAAACAGTGGCCGAGGAGAGTGTCTTTCCTCTACCAGAAGCTCCCATTGACATGCCTCCTCCACCTGCCCCTGATGGCCTTGATCTTCCAACCCCACCGCCTCTGCCATGTGACGAGAACTTAGAAGcTGCGCGCTCTCGCCGCTCACGGGTGCGACGCCATCCTCCTAGCTCTCGCTCGCTGTCTCTGAGGGTCCGCATGGGCCCCAGCTCTCGCTCGCTGTACACGCGCTCGCTTTTTCTGCCTCCTGCTCAATCACTCATGATACCCCCACCCCCTCCATACCCGCCTCCTCTGGCTCCACCGGTTTCGTTCAGCCCCTTGTGCAGGATCCCTGCCCGTCTGGAGCACCTGGACCTTGAAATTCCAGCCCCACCTCCATCACCACCACTGGATGGTTTTGACAACTTTGAAGAACTGCCCCCTCTACCTCCCCCCATTGATTACGACATAACTGCACCAGCCGAATATTTGGAGAAAGTGGTGGCACTATATAACTACGACACAGGCAAGCCGGGCGACCTGGTGTTTGAGGAGGGCGATATCATCTACCTCACCAGCAGGAATGAGGATGGCTGGTGTGAGGGCGTTCTCAATGGAGTAAAGGGATACTTTCCTGGCAACTACGTGGAGTCCACCGCTTAACTGCTCATAAGATGCCACAATGTCAGTGAATGAATTATTGAGATCGAGGCACCTTCTGTTTCTGAAGTGTAATAATGCAGAAATGCTTTTATACTTTGTTGacctttcaaacatttttaaacctttaaaaagttttctgtatttttttttttttgacattttaaacatttttaacatttaaaaaaatcaatgctgACTGATTGCGTCAGAGACAAGTCTGAATTTCAAAGTTTACTTTGGTCTTATATAATTGTGATCATAATTGATCTCTCAGGACTTTTAAGTTATAATCGTAATGTATAACATTAAGAAACGTTTTGTACATTTAGTTGCATTTGATAAGTTAAGTTCACGAAGTCGTGGTTAATAGTGTGGTTGATTCTGTAAACATATTTAGTTTGAATAGGCTATTGTGCAAAGTAAATAAtgaagtaatatataataatagatgtgtgtaatatatgttAATGCAGTTTCCtaattaaaaacctttattactcataataaattacatttaattgataACCTTTTCTTGATTCCTTTGCAACATTTCATGCTCTGTTTAATggattaaatgttaatgtaccATCACATCGGCCCAATTCAGTCACAGTTTCAATGTTTTATGATGCCAAGTTAGTATTTACAGTCCATAGAATCAATAAAATCTTGACGGTAA
>XM_043235979.1
gcaGGACGTTCTTGTTTCCGCCTGTTCCTCGAGCAGATCTGTGCTTGCAGCATCAAAGCAGAACTTGCGTTTGCTGTCAGAGGAAGGCAGCGACGGTTGGGGGGGTCCGAGTCTGACTGACAGATATCAGTAGACTTCTGTCGCGCGGAGGTTTCCGGAATCGTGCCTGAACCGTCTGTCATTCCGTCGCGCGATGAAGGACCAAAACTACTCCGAAGAAGTTACAAAAATACTGGAGGAGGCCCCCTCCGCTCGCAAAGCACTTTTAGACAACTACAACAATTTATACAAAGTAGCGGAGTACTGCGAGAGCAACTACACGCAGTGTGGAAATGACACCACCAAAGCCCTGGAGGAGACCAAGGCCTTCACTACTCAGTCCTTGGCTAGTGTGGCTTATCAGATCAGCTCTATGGCCACCAATGTGCTCAAGCTTCTGGACGCACAGACCCTGCAGCTCCGCAAGATAGAGTCGTCCATCAACCAGATCGGACAGACAGTGGACATGCACAGGGAGAAGGTGGCCCGCAGAGAGATCGGCGCTTTCACAGTTGCCAAGAGAGTTCCACGCAGTCATAAGGTTGTCCCCccagcaaaaaataaagaagccaAGATCAAGTATTCCCGCACACCCATCTCTTTCTCTAGCCTGGACTCAGTCGGCCATGGCATGAAGGATTCTGGCCAGCCGCAGCTAAAAACAGCGACCATGACTCGGAGCGGCAGCACACTGAGCCGAAGCAGCCGTCCACCTCCTGAGCCTGTCCAGTGTCCAGTGGCGCCCGGTCTCTCTCATGGAGCGTCCCTCACCTCCCTCAATGACAAGTCTATTGCTTCGAGTTTTGGTAAAGCCGTGCCGCCTCCTGTAGTGCCCAGCTGGCCCACCAACCCTGAGGTTGACATCATCAACACGCTGCTGGGTGAAGAGCCTCCTCCACCGCCCCCACTGATGGAGACAGAGGGCGAACAGGATCAGGGGGTGGAGAGCGGCccacctccaccacctcctcctcccctCGACTGCAGCAACATCCCCCCACCTCCCCCCATGCCCAGCTCAGTGAATACTCCTGATCCCAGCAGCCTCGTGACCATACCTCCtcctccaccagctccacctCTTGAAACAGTGGCCGAGGAGAGTGTCTTTCCTCTACCAGAAGCTCCCATTGACATGCCTCCTCCACCTGCCCCTGATGGCCTTGATCTTCCAACCCCACCGCCTCTGCCATGTGACGAGAACTTAGAAGcTGCGCGCTCTCGCCGCTCACGGGTGCGACGCCATCCTCCTAGCTCTCGCTCGCTGTCTCTGAGGGTCCGCATGGGCCCCAGCTCTCGCTCGCTGTACACGCGCTCGCTTTTTCTGCCTCCTGCTCAATCACTCATGATACCCCCACCCCCTCCATACCCGCCTCCTCTGGCTCCACCGGTTTCGTTCAGCCCCTTGTGCAGGATCCCTGCCCGTCTGGAGCACCTGGACCTTGAAATTCCAGCCCCACCTCCATCACCACCACTGGATGGTTTTGACAACTTTGAAGAACTGCCCCCTCTACCTCCCCCCATTGATTACGACATAACTGCACCAGCCGAATATTTGGAGAAAGTGGTGGCACTATATAACTACGACACAGGCAAGCCGGGCGACCTGGTGTTTGAGGAGGGCGATATCATCTACCTCACCAGCAGGAATGAGGATGGCTGGTGTGAGGGCGTTCTCAATGGAGTAAAGGGATACTTTCCTGGCAACTACGTGGAGTCCACCGCTTAACTGCTCATAAGATGCCACAATGTCAGTGAATGAATTATTGAGATCGAGGCACCTTCTGTTTCTGAAGTGTAATAATGCAGAAATGCTTTTATACTTTGTTGacctttcaaacatttttaaacctttaaaaagttttctgtatttttttttttttgacattttaaacatttttaacatttaaaaaaatcaatgctgACTGATTGCGTCAGAGACAAGTCTGAATTTCAAAGTTTACTTTGGTCTTATATAATTGTGATCATAATTGATCTCTCAGGACTTTTAAGTTATAATCGTAATGTATAACATTAAGAAACGTTTTGTACATTTAGTTGCATTTGATAAGTTAAGTTCACGAAGTCGTGGTTAATAGTGTGGTTGATTCTGTAAACATATTTAGTTTGAATAGGCTATTGTGCAAAGTAAATAAtgaagtaatatataataatagatgtgtgtaatatatgttAATGCAGTTTCCtaattaaaaacctttattactcataataaattacatttaattgataACCTTTTCTTGATTCCTTTGCAACATTTCATGCTCTGTTTAATggattaaatgttaatgtaccATCACATCGGCCCAATTCAGTCACAGTTTCAATGTTTTATGATGCCAAGTTAGTATTTACAGTCCATAGAATCAATAAAATCTTGACGGTAA
>XM_043235980.1
TTCTTGTTTCCGCCTGTTCCTCGAGCAGATCTGTGCTTGCAGCATCAAAGCAGAACTTGCGTTTGCTGTCAGAGGAAGGCAGCGACGGTTGGGGGGGTCCGAGTCTGACTGACAGATATCAGTAGACTTCTGTCGCGCGGAGGTTTCCGGAATCGTGCCTGAACCGTCTGTCATTCCGTCGCGCGATGAAGGACCAAAACTACTCCGAAGAAGTTACAAAAATACTGGAGGAGGCCCCCTCCGCTCGCAAAGCACTTTTAGACAACTACAACAATTTATACAAAGTAGCGGAGTACTGCGAGAGCAACTACACGCAGTGTGGAAATGACACCACCAAAGCCCTGGAGGAGACCAAGGCCTTCACTACTCAGTCCTTGGCTAGTGTGGCTTATCAGATCAGCTCTATGGCCACCAATGTGCTCAAGCTTCTGGACGCACAGACCCTGCAGCTCCGCAAGATAGAGTCGTCCATCAACCAGATCGGACAGACAGTGGACATGCACAGGGAGAAGGTGGCCCGCAGAGAGATCGGCGCTTTCACAGTTGCCAAGAGAGTTCCACGCAGTCATAAGGTTGTCCCCccagcaaaaaataaagaagccaAGATCAAGTATTCCCGCACACCCATCTCTTTCTCTAGCCTGGACTCAGTCGGCCATGGCATGAAGATTTGTTTTCAGGATTCTGGCCAGCCGCAGCTAAAAACAGCGACCATGACTCGGAGCGGCAGCACACTGAGCCGAAGCAGCCGTCCACCTCCTGAGCCTGTCCAGTGTCCAGTGGCGCCCGGTCTCTCTCATGGAGCGTCCCTCACCTCCCTCAATGACAAGTCTATTGCTTCGAGTTTTGGTAAAGCCGTGCCGCCTCCTGTAGTGCCCAGCTGGCCCACCAACCCTGAGGTTGACATCATCAACACGCTGCTGGGTGAAGAGCCTCCTCCACCGCCCCCACTGATGGAGACAGAGGGCGAACAGGATCAGGGGGTGGAGAGCGGCccacctccaccacctcctcctcccctCGACTGCAGCAACATCCCCCCACCTCCCCCCATGCCCAGCTCAGTGAATACTCCTGATCCCAGCAGCCTCGTGACCATACCTCCtcctccaccagctccacctCTTGAAACAGTGGCCGAGGAGAGTGTCTTTCCTCTACCAGAAGCTCCCATTGACATGCCTCCTCCACCTGCCCCTGATGGCCTTGATCTTCCAACCCCACCGCCTCTGCCATGTGACGAGAACTTAGAAGACCTTGAAATTCCAGCCCCACCTCCATCACCACCACTGGATGGTTTTGACAACTTTGAAGAACTGCCCCCTCTACCTCCCCCCATTGATTACGACATAACTGCACCAGCCGAATATTTGGAGAAAGTGGTGGCACTATATAACTACGACACAGGCAAGCCGGGCGACCTGGTGTTTGAGGAGGGCGATATCATCTACCTCACCAGCAGGAATGAGGATGGCTGGTGTGAGGGCGTTCTCAATGGAGTAAAGGGATACTTTCCTGGCAACTACGTGGAGTCCACCGCTTAACTGCTCATAAGATGCCACAATGTCAGTGAATGAATTATTGAGATCGAGGCACCTTCTGTTTCTGAAGTGTAATAATGCAGAAATGCTTTTATACTTTGTTGacctttcaaacatttttaaacctttaaaaagttttctgtatttttttttttttgacattttaaacatttttaacatttaaaaaaatcaatgctgACTGATTGCGTCAGAGACAAGTCTGAATTTCAAAGTTTACTTTGGTCTTATATAATTGTGATCATAATTGATCTCTCAGGACTTTTAAGTTATAATCGTAATGTATAACATTAAGAAACGTTTTGTACATTTAGTTGCATTTGATAAGTTAAGTTCACGAAGTCGTGGTTAATAGTGTGGTTGATTCTGTAAACATATTTAGTTTGAATAGGCTATTGTGCAAAGTAAATAAtgaagtaatatataataatagatgtgtgtaatatatgttAATGCAGTTTCCtaattaaaaacctttattactcataataaattacatttaattgataACCTTTTCTTGATTCCTTTGCAACATTTCATGCTCTGTTTAATggattaaatgttaatgtaccATCACATCGGCCCAATTCAGTCACAGTTTCAATGTTTTATGATGCCAAGTTAGTATTTACAGTCCATAGAATCAATAAAATCTTGACGGTAA
>XM_043235981.1
TGTTTCCGCCTGTTCCTCGAGCAGATCTGTGCTTGCAGCATCAAAGCAGAACTTGCGTTTGCTGTCAGAGGAAGGCAGCGACGGTTGGGGGGGTCCGAGTCTGACTGACAGATATCAGTAGACTTCTGTCGCGCGGAGGTTTCCGGAATCGTGCCTGAACCGTCTGTCATTCCGTCGCGCGATGAAGGACCAAAACTACTCCGAAGAAGTTACAAAAATACTGGAGGAGGCCCCCTCCGCTCGCAAAGCACTTTTAGACAACTACAACAATTTATACAAAGTAGCGGAGTACTGCGAGAGCAACTACACGCAGTGTGGAAATGACACCACCAAAGCCCTGGAGGAGACCAAGGCCTTCACTACTCAGTCCTTGGCTAGTGTGGCTTATCAGATCAGCTCTATGGCCACCAATGTGCTCAAGCTTCTGGACGCACAGACCCTGCAGCTCCGCAAGATAGAGTCGTCCATCAACCAGATCGGACAGACAGTGGACATGCACAGGGAGAAGGTGGCCCGCAGAGAGATCGGCGCTTTCACAGTTGCCAAGAGAGTTCCACGCAGTCATAAGGTTGTCCCCccagcaaaaaataaagaagccaAGATCAAGTATTCCCGCACACCCATCTCTTTCTCTAGCCTGGACTCAGTCGGCCATGGCATGAAGGATTCTGGCCAGCCGCAGCTAAAAACAGCGACCATGACTCGGAGCGGCAGCACACTGAGCCGAAGCAGCCGTCCACCTCCTGAGCCTGTCCAGTGTCCAGTGGCGCCCGGTCTCTCTCATGGAGCGTCCCTCACCTCCCTCAATGACAAGTCTATTGCTTCGAGTTTTGGTAAAGCCGTGCCGCCTCCTGTAGTGCCCAGCTGGCCCACCAACCCTGAGGTTGACATCATCAACACGCTGCTGGGTGAAGAGCCTCCTCCACCGCCCCCACTGATGGAGACAGAGGGCGAACAGGATCAGGGGGTGGAGAGCGGCccacctccaccacctcctcctcccctCGACTGCAGCAACATCCCCCCACCTCCCCCCATGCCCAGCTCAGTGAATACTCCTGATCCCAGCAGCCTCGTGACCATACCTCCtcctccaccagctccacctCTTGAAACAGTGGCCGAGGAGAGTGTCTTTCCTCTACCAGAAGCTCCCATTGACATGCCTCCTCCACCTGCCCCTGATGGCCTTGATCTTCCAACCCCACCGCCTCTGCCATGTGACGAGAACTTAGAAGACCTTGAAATTCCAGCCCCACCTCCATCACCACCACTGGATGGTTTTGACAACTTTGAAGAACTGCCCCCTCTACCTCCCCCCATTGATTACGACATAACTGCACCAGCCGAATATTTGGAGAAAGTGGTGGCACTATATAACTACGACACAGGCAAGCCGGGCGACCTGGTGTTTGAGGAGGGCGATATCATCTACCTCACCAGCAGGAATGAGGATGGCTGGTGTGAGGGCGTTCTCAATGGAGTAAAGGGATACTTTCCTGGCAACTACGTGGAGTCCACCGCTTAACTGCTCATAAGATGCCACAATGTCAGTGAATGAATTATTGAGATCGAGGCACCTTCTGTTTCTGAAGTGTAATAATGCAGAAATGCTTTTATACTTTGTTGacctttcaaacatttttaaacctttaaaaagttttctgtatttttttttttttgacattttaaacatttttaacatttaaaaaaatcaatgctgACTGATTGCGTCAGAGACAAGTCTGAATTTCAAAGTTTACTTTGGTCTTATATAATTGTGATCATAATTGATCTCTCAGGACTTTTAAGTTATAATCGTAATGTATAACATTAAGAAACGTTTTGTACATTTAGTTGCATTTGATAAGTTAAGTTCACGAAGTCGTGGTTAATAGTGTGGTTGATTCTGTAAACATATTTAGTTTGAATAGGCTATTGTGCAAAGTAAATAAtgaagtaatatataataatagatgtgtgtaatatatgttAATGCAGTTTCCtaattaaaaacctttattactcataataaattacatttaattgataACCTTTTCTTGATTCCTTTGCAACATTTCATGCTCTGTTTAATggattaaatgttaatgtaccATCACATCGGCCCAATTCAGTCACAGTTTCAATGTTTTATGATGCCAAGTTAGTATTTACAGTCCATAGAATCAATAAAATCTTGACGGTAA

Function

NR:

description
PREDICTED: ABI gene family member 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235978.1 True 2463 mRNA 0.49 11 12498774 12508792
XM_043235979.1 False 2447 mRNA 0.49 11 12498774 12508788
XM_043235980.1 False 2223 mRNA 0.47 9 12498774 12508780
XM_043235981.1 False 2207 mRNA 0.47 9 12498774 12508776

Neighbor

gene id symbol gene type direction distance location
si:dkey-283b1.6 NA coding downstream 763 12493718 ~ 12498011 (-)
rarab rara,rarab,LOC108434941,LOC108276117,LOC108261354,LOC107737746,LOC107695008,LOC107554136,LOC107582978,LOC107689638 coding downstream 51050 12345435 ~ 12447724 (-)
LOC122342092 LOC107758479 coding downstream 165933 12322244 ~ 12332841 (-)
LOC122336412 LOC107658520,LOC107554095,LOC107582983,LOC107729569,LOC107689640,LOC107737779 coding downstream 178708 12315450 ~ 12320066 (-)
aoc2 aoc2,LOC107658518,LOC107729559,LOC107582984,LOC107689706 coding downstream 198201 12297054 ~ 12300573 (-)
LOC122342135 LOC107695140,LOC107758481,LOC107583074 coding upstream 399 12509191 ~ 12510507 (-)
ccdc103 LOC107758482,LOC107583073,LOC107695153 coding upstream 1817 12510609 ~ 12512465 (-)
rpl23 rpl23,RPL23,rl23 coding upstream 3811 12512603 ~ 12514795 (-)
si:dkey-283b1.7 si:dkey-283b1.7,LOC107758487,LOC107695187,LOC107689703,LOC107554098,LOC107737768 coding upstream 6358 12515150 ~ 12521787 (-)
sgsm3 sgsm3,LOC107737740,LOC107695086,LOC107758493,LOC107689630 coding upstream 21317 12530109 ~ 12544481 (-)
LOC122332655 NA non-coding downstream 203351 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 227838 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 268395 12226575 ~ 12230379 (-)
G19503 NA non-coding downstream 316290 12182258 ~ 12182484 (-)
G19463 NA non-coding downstream 401412 12092899 ~ 12097362 (-)
G19677 LOC107737766 non-coding upstream 355518 12864310 ~ 12886954 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding upstream 391989 12900781 ~ 12902910 (-)
LOC122332187 NA non-coding upstream 563768 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 571278 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 581879 13090671 ~ 13091152 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 154902 12339187 ~ 12343872 (-)
LOC122341756 NA other downstream 578007 11909775 ~ 11920767 (-)
G19383 NA other downstream 617815 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 770773 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 784055 11694272 ~ 11714719 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 113991 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 173198 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 497204 13005996 ~ 13068190 (-)
G19700 NA other upstream 538249 13047041 ~ 13047494 (-)
gng13b NA other upstream 1277217 13786009 ~ 13792602 (-)

Expression


Co-expression Network