CI01000004_07823292_07824588


Basic Information

Item Value
gene id CI01000004_07823292_07824588
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7822836 ~ 7826203 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07823292_07824588.mRNA
ATATAAGAACACAAGTGACCAGGACAGTGACCACAACTTTCTTGTTTCTTTTTACATTAAGCTGACATTGTTTTGCCATCTTTTTGAAACCACATTAGTACGTTAGTCCTAGTAAAAAAAAAAGCTGTGAGCAAAATTGTGGTCTTGCAATGTTAGAATTACTAAGTTCCTTCTTTTCTAGAGGATGTCTATCTATCACCACTATCAGCATTACCCGCAACATCTGAGCTACTTTCAAATTTTTCATTTTTTTTTCTAATTTTGAGCTTCATTGAAGTCTTGATCTGGTTAACCAGCTTTCATTTCTGTATATTCAAACTAGTCACATTCAGTGATTTTCTGGTACTGGTACATTTATGAGTCAGTGTAGCATATATTGTTACCAATAGCTTTTATAGCATGATTTAAACTCGATTATTAATGAAGGCTGTGTTATCAACATCGGCTACAGAACAAATGGAGTACTTTATGAACAATCTAGACACTGACATAGGTGATATAGTTTCACCTACACGATACGGTAAGACCATGTCTGTACCTAGCACTGTACCTAGCACAGTAAATAATTCTACATCTGGCCACGAGCCCACCACCACCACCACCAACAACAAAAACAACCTTGGACTTGCTGTTGGTTTGCCTATATTCTTTGTGGCTTTGCTTCTGGTGGGGATAGCAGTGGTGCTCTGGTTTCGACACAGAAAATCAGTTGATATTGAGTTATCTAATAAACTTAAGAGCCAAGATAAGAGCCACGATGGTCATTCCAGGGAGTCTCCATACAGTGGATACGGCGGAGGACTTCAGCCTGCACCGCAGAGCCCAATCTATGAGAACTTTCAGAGTGGACAGTCAAATCTGCATGAATTTCAGAGCAGTGCTGTAGAAAGCGAAGACAGAGCCCATCAAGCATACCTGCAGTGTGATCCACATGATGCAATCTACAGCAATGATCCTGCCCTCTTCCATCCAGATCAGGCAGAAATCTCTGAGGATGTTTACATCATGCCAGATGCTTGAAAGTTTGAAATGTTTTGCTGTCCAATATTCATCCTTCTAGTTCAGTTGAATAATTTGTGCTGGCATGATGTGACACAATAACAAGTCTTTATTTTCAGATGGTAAAATTAAGGGCAAAACATTCTGCCCAAGAAATAGACTTAACCTGAGCAATTCAAATGCACTAAAAACATTACATGAGCCAGCTTAGTTTATTGACTGAACTCAGTGAGACAGCAAAGCATAATCATGACCTCATTGATCACAGTTTAACAGGTGTCTCTGCCGATTGCAAATATTTCCAGCTGAAAAGACCAGCTTTGACCAGAGTGAATGTTACATGCTGGTACAGACTGGTTTATTCTGGTTTGGTGGACCAACATAGCTAAGTTGATGTAGTTCAGATGCTGGTCCATATGCTGGACTTTTCACATGTTTTTAATGTTTAATTTTTGAGTACTACTGTTCAAAAGTTTGGGGTCAATGAGATTTTTTTTTAAAGAATTTAATACTTTTATGCGTTAAATTGGTCGAAAGTGACAGTAAAGACATTTATAATGTTACAAAATATTTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTCTATTCATCAAAGAATCCTGATAAAAATGTATCACGGTTTCCACAAACATTTTAAGCAGCGTATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGACTGCCGAAAATGTTGTGAATTATTGTGAATAAATTATAAATAGATTATTTTTTCACATGAATAAATTATATTTTAGAATATATTTTATTTTAAAATATATTTTAAGAGACTTGTTTCAAAAAACAGTTGAAAATCTTACAGAATCAAAATTTTTGAATGGTAGTCCATACAAAACTTTTTTAAGCTAAGCTTTTTATCTATTAGGTGACTGTAATAACTATCCATCTTGACTGTGCCTTATGATCTTTATGTCACTGTGACTCACTGAAATCTTCTCACAGTGATTAGCTACAAATTAGCTGAGAGTGTCTTTTCCACTTCCACAACTAAATGAAACTGGTGGAACATTAGACAAGTGGGCGGGTTTATATGGCACCAAGAAGGCGTCAGAATGTCACAATAAGAGATGTACAATTCAGTCTTTGCTTGCCATAGTCTTGGTGTTGTTCATATACACATCTCTCTGAAAAAGTATATAATAATTGCAGCATATCCTGTTGACAATTCACTGTTTCAGATATATTTCTCAATCTCAGATGAGATTGTTGTTGACTTTTAATTAACCTACAGTTAATGGCCATTGATCAGAGTTTAAACATTACATTGGCCCAGTCCCACTAACCTCCAGATAGTAAGCCTCAGGGCTCAATATATGTATGAGATTCACTTGCACTATGTCTTATATTTTTTGATCATGATCATGCATTTTTATGCTTTGCAAACCTAAATATTTGGTGTGTGAAGTGTGCTTGTCAACTTTTTAAACTTGTCAGTGAGGTAAGTTTATCTAACCTGTTGACATAGACAAGGTTTAGGTGAAATTGCAAGAATGACTTGTGATAGTCTAGCTTCAGTAAGAATGGGTTGGAAAGTAAAACCTAATCATTAATGTCATGTACAGTAAGCCATAATTTTCCA

Function

NR:

description
hypothetical protein cypCar_00009670

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07823292_07824588.mRNA True 2635 mRNA 0.36 4 7822836 7826203

Neighbor

gene id symbol gene type direction distance location
CI01000004_07775338_07780352 ANGPTL4 coding upstream 41518 7775242 ~ 7781318 (+)
CI01000004_07759670_07760529 RPS28P9, RPS28 coding upstream 61839 7759509 ~ 7761023 (+)
CI01000004_07712175_07712384 NA coding upstream 110434 7712175 ~ 7712402 (+)
CI01000004_07686845_07692184 NR2F6, NR2F6A, NR2F6B coding upstream 129754 7686018 ~ 7693082 (+)
CI01000004_07654234_07655677 MRPL34 coding upstream 167055 7654234 ~ 7656383 (+)
CI01000004_07843003_07860951 NA coding downstream 16800 7843003 ~ 7862424 (+)
CI01000004_07868939_07899539 PIK3R2 coding downstream 42417 7868620 ~ 7900206 (+)
CI01000004_07903583_07906667 NA coding downstream 77380 7903583 ~ 7906670 (+)
CI01000004_07907663_07910335 MPV17L2 coding downstream 81460 7907663 ~ 7910478 (+)
CI01000004_07911608_07916117 NA coding downstream 85405 7911608 ~ 7916155 (+)
G28790 NA non-coding upstream 819 7821817 ~ 7822017 (+)
G28784 NA non-coding upstream 18183 7804266 ~ 7804653 (+)
G28780 NA non-coding upstream 56447 7765563 ~ 7766389 (+)
G28779 NA non-coding upstream 58125 7764512 ~ 7764711 (+)
G28791 NA non-coding downstream 1165 7827368 ~ 7827682 (+)
G28797 NA non-coding downstream 157278 7983481 ~ 7983777 (+)
G28800 NA non-coding downstream 199288 8025491 ~ 8025898 (+)
G28801 NA non-coding downstream 202047 8028250 ~ 8033712 (+)
G28819 NA non-coding downstream 450999 8277202 ~ 8284097 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1248415 6570771 ~ 6572667 (+)
G28302 NA other upstream 1320749 6470028 ~ 6502087 (+)
G28165 NA other upstream 2089835 5732589 ~ 5733001 (+)
G27805 NA other upstream 2449033 5372825 ~ 5373803 (+)
CI01000004_08414451_08436256 NA other downstream 607502 8414316 ~ 8439933 (+)
G28859 NA other downstream 773032 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1150235 8976254 ~ 8980984 (+)
G30797 NA other downstream 2671173 10497376 ~ 10497788 (+)
G31710 NA other downstream 3811048 11637251 ~ 11642400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015446 NA non-coding NC_007113.7 CM002886.2 24603292 ~ 24612068 (+)