G33506


Basic Information

Item Value
gene id G33506
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6174621 ~ 6176655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU49372
ttggattttattagtatttgaGGGACTTGATGGGTGCATACAAGAAAACATAAGAGGGGTGATGCATCTGTCTTTGACAGGAAATGAAGTGGGAGGAGTGATGGAAAGAATTGGGAAGGACAACAAGTCAAGACTCCAAATCGTGTCGGCTAAACCGCAACCGTGCAATGTGTAATTTAAAGATTGGACTATCACAACGGGTCGGACTTTGAACCAGATTTTGCAGGTGATCCAGAACGCAGGAGCATGTCTGCTCTTCAATCAGCCGAAGAGAGCCTGTATCACACCGGTTCTGATCTCGCTAGGCTGGTTCCCTGTTGTGGCCAGATTCGAATATGAGGATTTGACGGTGTTTTTCAGGACTGAAGAAGCGACTCCCTCTCTCCAGCTCAGTTCTTCACACTCTCCAAAACCTTtaccctctctgtctctctctggtgGAATGACCTGCCAACTCTGCCTGAACATCTTTCAAAGTCAGCTGTAGAAAAACCTCTTCTACTCTGTTATTTGTCAGTGGCCCGACAACCATCAATGGTGCAATTCCACGGCTGAGTGAACGTGCAAACAGTTTGACTAAGTGGTGACAGCCGAAACCCAGAGTAGAAAATGACTACTCTCTGTCTGTTCTGCTTCCTTTGTCTCACCAAGATGGCTCACGGTTGAAAAGAGCATGACGGCTTTGCGTGTCTGATcacctctcctcctctctttctaTAACGATGTTCCTTTGTCCATCAATCTCTGCGTGCAGCATCACACCTGCGTATTCGGACCTTTGCCTTCGTGAAGAGAAGACGGGAGAAGGAGAAAGTGTCCTGTGCAATTAGAGGGGCCTGACGGTCACCTCCGCCGCCGCACACACGCTCGCACGCAACGGCGCTAATGAAGGAGCCTTTCCGAGGGCGTTTTGAGTTCAGTGCTCTGTCAGCTCGATGTGTCATGTGCACttgaaaataaactataaatgtgTGCGCTGACTTGTTCCTTTTTAAGGTTTCCCTAACTTCCTTTCTAGAACTTCTTGTCATTGACATCCCTCATTTCTCTCTCGATCTCCTCCATTTCTCTCCTCAGGTAGCGGGGG

Function

GO:

id name namespace
GO:0034170 toll-like receptor 11 signaling pathway biological_process
GO:0002376 immune system process biological_process
GO:0002218 activation of innate immune response biological_process
GO:0002221 pattern recognition receptor signaling pathway biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0002757 immune response-activating signal transduction biological_process
GO:0002758 innate immune response-activating signal transduction biological_process
GO:0002764 immune response-regulating signaling pathway biological_process
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU49372 True 1087 lncRNA 0.48 2 6174621 6176655

Neighbor

gene id symbol gene type direction distance location
arhgef28a arhgef28,LOC107718644,LOC107596821,LOC107757522 coding upstream 12136 6105795 ~ 6162485 (+)
btf3 btf3,LOC107655933 coding upstream 78605 6092247 ~ 6096016 (+)
tmem174 NA coding upstream 141989 6029626 ~ 6032632 (+)
fcho2 fcho2,LOC107655928,LOC107700925 coding upstream 154781 5983148 ~ 6019840 (+)
gatc LOC107752156,LOC107654604,LOC107672604,LOC107741226,LOC107595969 coding upstream 216208 5956426 ~ 5958413 (+)
fibcd1b fibcd1,LOC107739453,LOC108428067,LOC107693814,LOC107596897,LOC105015243,LOC107700935 coding downstream 345881 6522536 ~ 6591580 (+)
zgc:63972 zgc:63972,LOC107710753,LOC107598209,LOC107726290,LOC107587483,LOC107700896 coding downstream 462592 6639247 ~ 6648360 (+)
garnl3 garnl3,si:ch211-182d3.1,LOC107700942,LOC107693837,LOC107710757 coding downstream 681224 6857879 ~ 6915413 (+)
c5h9orf78 zgc:103692,cunh9orf78,LOC107587408,LOC107726294,LOC107710755,LOC107691020,LOC107596954 coding downstream 766710 6943365 ~ 6945577 (+)
rpl7a rpl7a,LOC107691022,LOC107596970,LOC107726288,LOC107693850,LOC100194725 coding downstream 772663 6949318 ~ 6952114 (+)
G33505 NA non-coding upstream 444 6173850 ~ 6174177 (+)
G33503 NA non-coding upstream 7035 6167363 ~ 6167586 (+)
G33502 NA non-coding upstream 7371 6166734 ~ 6167250 (+)
G33501 NA non-coding upstream 7917 6166415 ~ 6166704 (+)
G33500 NA non-coding upstream 8998 6165405 ~ 6165623 (+)
G33619 NA non-coding downstream 55642 6232297 ~ 6235641 (+)
G33665 NA non-coding downstream 299046 6475701 ~ 6494530 (+)
G33708 NA non-coding downstream 744090 6920745 ~ 6921639 (+)
G33712 NA non-coding downstream 752992 6929647 ~ 6930785 (+)
G33844 NA non-coding downstream 957639 7134294 ~ 7134884 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other upstream 86059 6087262 ~ 6088562 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other upstream 191805 5959832 ~ 5982816 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other upstream 524736 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other upstream 526574 5625267 ~ 5648047 (+)
fbrsl1 LOC107656817,LOC107600129 other upstream 1272218 4644101 ~ 4902403 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other downstream 71140 6247795 ~ 6255340 (+)
G33664 NA other downstream 296692 6473347 ~ 6491986 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other downstream 440621 6617276 ~ 6762808 (+)
si:dkey-34e4.1 si:dkey-34e4.1,LOC107700938,LOC107596916,LOC107710760,LOC107587412 other downstream 616710 6793365 ~ 6825366 (+)
kank1b kank1b,LOC107730999,LOC107691025,LOC107597012,LOC107587402 other downstream 801893 6978548 ~ 6988772 (+)

Expression


Co-expression Network