dpm2 (dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395)


Basic Information

Item Value
gene id dpm2
gene name dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7672827 ~ 7674636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU50187
ATTTTGGTTTCATGCGGAAGTGACACGTTCATAATGgcaacAGGAGCAGATCAAGCTGTTGGTTTTGGACTTGTTGGTTTTAGTCTGTTGCTGTTTACGTATTACACAGTTTGGGTCATAGTCTTgCCTTTTGTAGACAGCGACCATGTAATCCACAGCTATTTTCTTCCACGGGAATATTCGGTCATACTTCCTGGAGTCGCAGCCTTAATCCTCTTACTTTTTGTTGgtacCTTCATAGGGGTGATAACATGGAAGAATCGAAAACCAAAGAAAGTCGATTAAGGCTCTTCGGGCAGTTGTGATTCATCTGGTCGCGAGGACGAACTGTGTTGATCTCACTCACGCATCAACAACACTTTCAATTTCATTTATAGCAAAGCGCTACTGAGCAAGTAGCTGCATAGTCTTCTGTTTCAGCTTTGTGCACTCAATGGCCGTGACTGAAGACCACACCACCTGTGACACGTTTAGCTTTGGAGAATTCTTTCCATGGTCAGGGAGTTAAAAGCAAATACTATGTGAGAACATGCTTTAGGCGACTAAGAGATGGGACAGACAGGGGTAGGTATGTATAGGGTGTATCTGGAAGACATCTAAATGGAATATGGTatctttttgtttagttatgCTTTAAGTTGAAGAGATTCAGCTGTTCTTTTAGGTTGTAAATAGATGTATTTATAAACTGGACTGCTTGCTTCTAGCAGCAAAATAATTCAGGACAAAGATCTATGAAAAATGGGAAAGagtacttttttgtaatataaacaataccacattaaaatgaatagaaatgtg
>TU50190
ATTTTGGTTTCATGCGGAAGTGACACGTTCATAATGGTAAGATGCTCTGAAATTGACGTGGAAGcgttatgttatgttttgttttattgtcgTTTGCTTGTACGTGTGTTAATACTATGTTTAATTGTTGGTTGCCTCGTTGTTGCTGGCTGTTAACTGTCCAACTTCATAGTTAATAAGATTCATTAGCAACACAAGAGTTTCACACCGTGCTTCGTAATTAGGCGACATAAAATAATTCGCTATTTAAACAGtagttattgtttattaatttaaacgCGTTTATTCTGTAATACTTCTTTATTCATTGCAGCGAGTGAATAATTTGGCCTGTCACATAAATCCAGATACCATTAACACCATAagtgtgtttcttttaatttaaaaatacatagttTTCTTTCATTGTGGAAGTCAATAAAAGGCaacacattcatttattaaaaatgcaacgtttatttaaatgttatgtttatatgcattttatttgaaacgagttatattaaatgtaatttgcacTTATCGTTGAGCTTTTAGATAAAAatcggattttttttttcaggcaacAGGAGCAGATCAAGCTGTTGGTTTTGGACTTGTTGGTTTTAGTCTGTTGCTGTTTACGTATTACACAGTTTGGGTCATAGTCTTgCCTTTTGTAGACAGCGACCATGTAATCCACAGCTATTTTCTTCCACGGGAATATTCGGTCATACTTCCTGGAGTCGCAGCCTTAATCCTCTTACTTTTTGTTGgtacCTTCATAGGGGTGATAACATGGAAGAATCGAAAACCAAAGAAAGTCGATTAAGGCTCTTCGGGCAGTTGTGATTCATCTGGTCGCGAGGACGAACTGTGTTGATCTCACTCACGCATCAACAACACTTTCAATTTCATTTATAGCAAAGCGCTACTGAGCAAGTAGCTGCATAGTCTTCTGTTTCAGCTTTGTGCACTCAATGGCCGTGACTGAAGACCACACCACCTGTGACACGTTTAGCTTTGGAGAATTCTTTCCATGGTCAGGGAGTTAAAAGCAAATACTATGTGAGAACATGCTTTAGGCGACTAAGAGATGGGACAGACAGGGGTAGGTATGTATAGGGTGTATCTGGAAGACATCTAAATGGAATATGGTatctttttgtttagttatgCTTTAAGTTGAAGAGATTCAGCTGTTCTTTTAGGTTGTAAATAGATGTATTTATAAACTGGACTGCTTGCTTCTAGCAGCAAAATAATTCAGGACAAAGATCTATGAAAAATGGGAAAGagtacttttttgtaatataaacaataccacattaaaatgaatagaaatgtg
>XM_043239909.1
TGCTGGACGTTTTTGAGAGATTAAAGGGGTAAAAAACTACAATTCCCAGCACGACTTCCGTTGCCGGTCGGAAGTACATTTCAAAATCAGGACATTTTGGTTTCATGCGGAAGTGACACGTTCATAATGgcaacAGGAGCAGATCAAGCTGTTGGTTTTGGACTTGTTGGTTTTAGTCTGTTGCTGTTTACGTATTACACAGTTTGGGTCATAGTCTTgCCTTTTGTAGACAGCGACCATGTAATCCACAGCTATTTTCTTCCACGGGAATATTCGGTCATACTTCCTGGAGTCGCAGCCTTAATCCTCTTACTTTTTGTTGgtacCTTCATAGGGGTGATAACATGGAAGAATCGAAAACCAAAGAAAGTCGATTAAGGCTCTTCGGGCAGTTGTGATTCATCTGGTCGCGAGGACGAACTGTGTTGATCTCACTCACGCATCAACAACACTTTCAATTTCATTTATAGCAAAGCGCTACTGAGCAAGTAGCTGCATAGTCTTCTGTTTCAGCTTTGTGCACTCAATGGCCGTGACTGAAGACCACACCACCTGTGACACGTTTAGCTTTGGAGAATTCTTTCCATGGTCAGGGAGTTAAAAGCAAATACTATGTGAGAACATGCTTTAGGCGACTAAGAGATGGGACAGACAGGGGTAGGTATGTATAGGGTGTATCTGGAAGACATCTAAATGGAATATGGTatctttttgtttagttatgCTTTAAGTTGAAGAGATTCAGCTGTTCTTTTAGGTTGTAAATAGATGTATTTATAAACTGGACTGCTTGCTTCTAGCAGCAAAATAATTCAGGACAAAGATCTATGAAAAATGGGAAAGagtacttttttgtaatataaacaataccacattaaaatgaatagaaatgtg

Function

symbol description
dpm2 Predicted to enable enzyme regulator activity. Acts upstream of or within muscle structure development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of dolichol-phosphate-mannose synthase complex. Is expressed in brain; cloaca; pronephric duct; solid lens vesicle; and vertical myoseptum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iu. Orthologous to human DPM2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory).

NR:

description
dolichol phosphate-mannose biosynthesis regulatory protein isoform X2

GO:

id name namespace
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50187 False 801 lncRNA 0.40 4 7672920 7674636
TU50190 True 1327 lncRNA 0.36 3 7672920 7674636
XM_043239909.1 False 894 mRNA 0.40 4 7672827 7674636

Neighbor

gene id symbol gene type direction distance location
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding upstream 373 7643129 ~ 7672454 (+)
pkn3 LOC107681845,LOC107737478,LOC107587363,LOC107597294,LOC107712357,LOC107664395 coding upstream 58939 7599502 ~ 7613888 (+)
coro1cb LOC107723343,LOC107597269,LOC107681860,LOC107587361,LOC107740952 coding upstream 81203 7581530 ~ 7591624 (+)
ssh1b LOC107597252,LOC107681862,LOC107723353,LOC107660766,LOC107740951 coding upstream 94615 7567773 ~ 7578212 (+)
arpc5lb arpc5lb,arpc5la,LOC107598357,LOC107681842,LOC107723334,LOC107740947,LOC107587390 coding upstream 161319 7505423 ~ 7511508 (+)
pip5kl1 pip5kl1,LOC107598405,LOC107681849,LOC107712381,LOC107587371,LOC107664401,LOC107748514 coding downstream 1423 7676059 ~ 7683284 (+)
sh3glb2b sh3glb2b,LOC107748508,LOC107681863,LOC107664415,LOC107597332 coding downstream 9096 7683732 ~ 7703171 (+)
LOC122344894 cyb5d2,LOC107664515,LOC107712371,LOC107597422,LOC107664398 coding downstream 300447 7975083 ~ 7976638 (+)
spns2 spns2,LOC107677434,LOC107597455,LOC107722776,LOC107587355,LOC106602867 coding downstream 351104 8025740 ~ 8090672 (+)
ftr82 LOC107712362,LOC107664526,LOC107597500,LOC107677429,LOC107587354,LOC107722781 coding downstream 445553 8120189 ~ 8126047 (+)
G34064 NA non-coding upstream 32095 7640376 ~ 7640732 (+)
G33899 NA non-coding upstream 183864 7447776 ~ 7488963 (+)
G33903 LOC107723325,LOC107598017,LOC107740964,LOC107587450,LOC107681865,LOC107660777 non-coding upstream 189840 7464371 ~ 7482987 (+)
G33888 NA non-coding upstream 339049 7333469 ~ 7333778 (+)
G33887 NA non-coding upstream 343208 7329347 ~ 7329619 (+)
G34071 NA non-coding downstream 35667 7710303 ~ 7711178 (+)
LOC122345618 NA non-coding downstream 38978 7713614 ~ 7725823 (+)
G34075 LOC107664520,LOC107748505,LOC107597375,LOC107712354,LOC107664410 non-coding downstream 43337 7717973 ~ 7780924 (+)
G34104 NA non-coding downstream 190531 7865167 ~ 7934699 (+)
LOC122345061 NA non-coding downstream 237456 7912092 ~ 7931348 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other upstream 75307 7592963 ~ 7597520 (+)
svopb LOC107723362,LOC107681854,LOC107598053 other upstream 105564 7558940 ~ 7567263 (+)
G33891 myhz1.2,myhz2,myhz1.1,ns:zf-e68,myhc4,mmyhl1,myhb,mmyhl2,LOC107723326,LOC105016875,LOC105016873,LOC106565367,LOC107088603,LOC107384188,LOC107093413,LOC103461378,LOC108241321,LOC107083053,LOC107083052,LOC107378336,LOC106938339,LOC106596646,LOC106596400,LOC106585883,LOC106597527,LOC106594844,LOC108261437,LOC106595486,LOC106598139,LOC108261508,LOC103379498,LOC103379499,LOC108444093,LOC101482140,LOC107660779,LOC108443910,LOC108415768 other upstream 152586 7420140 ~ 7520241 (+)
LOC122345182 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006,LOC103370545,LOC107723326 other upstream 223330 7373608 ~ 7449497 (+)
G33890 myhc4,myhz2,ns:zf-e68,myhz1.1,myhz1.2,LOC107723326,LOC107660779,LOC108415768 other upstream 226611 7425705 ~ 7446216 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other downstream 79438 7754074 ~ 7797968 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other downstream 326942 8001578 ~ 8010599 (+)
snx19a snx19a,LOC107597619,LOC107681657 other downstream 615084 8289720 ~ 8305446 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other downstream 1189566 8864202 ~ 8871518 (+)
si:ch211-102c2.4 NA other downstream 2121745 9796381 ~ 9799358 (+)

Expression


Co-expression Network