LOC122345618


Basic Information

Item Value
gene id LOC122345618
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7713614 ~ 7725823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU50209
cgacCCTCCAGGACCGAGCTCGGACAGCCCTGCAAATTGTGCgagttttgttgtgaaaacctggcaaccctttACGTCGAGCAGAACTCACAAGTTAAATTTCCAAAAGAGGGCAGTTTCCCAGATGATATCAAAGAATGCTTCGCATCACCCCTCTGGATCACATTCTGCCCATATTAGAGTTTAGGCATTTCTAAAAAACTCTCATCGGCGTCGGCTGCTGCAGGGTTTGTGGGATTGAGGGATGATCTCGACAAGAACCTCGACATCTCATGTCACGGTAACGGTATTTCCAGatatttacTTATTTCCAGAGGATGCTTTTTATTTGCTTCAAAGGCaaacatgaatgaaatgaaagcatgtgcttagtatgaaaaaaaaataaaaaagtgac
>XR_006251017.1
TGACACTGGACGAACAGCAGGCTGGAGCtcaactctgcaggacaccgacCCTCCAGGACCGAGCTCGGACAGCCCTGCAAATTGTGCgagttttgttgtgaaaacctggcaaccctttACGTCGAGCAGAACTCACAAGTTAAATTTCCAAAAGAGGGCAGTTTCCCAGATGATATCAAAGAATGCTTCGCATCACCCCTCTGGATCACATTCTGCCCATATTAGAGTTTAGGCATTTCTAAAAAACTCTCATCGGCGTCGGCTGCTGCAGGGTTTGTGGGATTGAGGGATGATCTCGACAAGAACCTCGACATCTCATGTCACGGTAACGGTATTTCCAGatatttacTTATTTCCAGAGGATGCTTTTTATTTGCTTCAAAGGCaaacatgaatgaaatgaaagcatgtgcttagtatgaaaaaaaaataaaaaagtgactcAGATTGTGTGATATTTGTTTTATGACCCCTTAATGGATACCCAGAAGGTGTGGGCGATTGCAGAAATACTCCCCAGCTATCTACCTCTGACCTTTAAGAAGGGTACAATTTAAAGATGAGAACATTTCAGTAGGTGGGGGGCTTTCTCCACTGGATTGTTTTTCAGGATTGAGACAAAAGCAAATTGTTCATCTCAGAAGACAAGTCACGATATGGAAATTGTGCCGTTAAGTATTTGTGATCAAACATTCACTCTAAAACTCTAAAAGATCACTCGAAGACCACCCACCTGGGGGCAGCCGCTACTAAATACAGATCAAAACAGGTTTAGatcacatttttgtgttttttagagTTGTCTGTGGGCTTCTAAACACCAAACGTTTTGTTGTGGCACTTATGAACCatttttactcaatagaagttGACATGATCATACAAGTACCATACTGTTGATAATAAATGTGTCACGTGACACGTCAGCATATTGTTCAAACACAAAATAGCTGCTTCATGTGCTGTGCAAGGGAGAAGGACTATATTTGAAATCATGCCTTACAAGAtgttaaaactttataaaaacaaaacctttgaaGTTAGGCACTTACTTGATTGATCCTACCACCACGATTCTTGCACAGATGATGCCAACAGAAACGCATGGTCTGTAGATGAAAGTGATGATTAtactgaagagaaaaaaagaaactgatcTGAGCAATATAGTTTACTGTACATGTAAGAAAGGAGTCACGCTTTAACCTTTGCTTGATATTTGTGGTCTCACTAAAGGAACGCTACAAACTGAAGTAAACATTTTGACATGCATAACATCATTATCATATTATAACATAACAtacttatcacattatagtcctgcacgtccgctgcgttctcaaaactctggccatttgataatacctagaacatcaaaatcaactgcggacGGCAGGTGATTACCTGGATATAATATGGATACTTATCTTTCAAAAACTCTGGATTTGCTACAGGGGGTCTTTGTTCACTCCCCGGAGCCGCGTGTGGCACGTTTTATTACAGATACGCAGACTTTATTTCACAGCAAACACCTGTTTGTCTCCATGGAAAGGCTTGGAGGGGCCACTTAGactggatttgtctgaaagaaaaaaaaaggatgccTCGAAGGCGAGTAAAAGACAAGCTAATTTTCTAACCCTGTGATTCATGCAAAATACTAACGCTGATGCATTCGGACTAATGCAGCTTGATATTtagctttgtttaaaaaacagaacaatataaataatgaatagagTTACATAGATACATCTGAAAGACATAATATGaaaactatttgtttttttgttgtaggGATGCCATAATGGGATTCAGGCTGAATGAGTTTGGACAGTTGGACAACTCCTAATTCATAAAATTAGTAAAGTATTAGTATAGCTCCATGACTTCATCATGCCCTTTGGCGCAAATTAAAACAACGCTGGTTTCCATACAACTGTAATGTGTTACAATATCCACCAATGGCCTAGtaacaaataaatctaaaaatgttagCATCCAGCATAAAATAGATTCACAGTGCCTCAAATACTATACAACTGAATATGACATTTTCACAAAAGTCAAATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50209 False 397 lncRNA 0.43 4 7715374 7724190
XR_006251017.1 True 2075 lncRNA 0.39 5 7713614 7725823

Neighbor

gene id symbol gene type direction distance location
sh3glb2b sh3glb2b,LOC107748508,LOC107681863,LOC107664415,LOC107597332 coding upstream 10443 7683732 ~ 7703171 (+)
pip5kl1 pip5kl1,LOC107598405,LOC107681849,LOC107712381,LOC107587371,LOC107664401,LOC107748514 coding upstream 30330 7676059 ~ 7683284 (+)
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding upstream 41160 7643129 ~ 7672454 (+)
pkn3 LOC107681845,LOC107737478,LOC107587363,LOC107597294,LOC107712357,LOC107664395 coding upstream 99726 7599502 ~ 7613888 (+)
coro1cb LOC107723343,LOC107597269,LOC107681860,LOC107587361,LOC107740952 coding upstream 121990 7581530 ~ 7591624 (+)
LOC122344894 cyb5d2,LOC107664515,LOC107712371,LOC107597422,LOC107664398 coding downstream 249260 7975083 ~ 7976638 (+)
spns2 spns2,LOC107677434,LOC107597455,LOC107722776,LOC107587355,LOC106602867 coding downstream 299917 8025740 ~ 8090672 (+)
ftr82 LOC107712362,LOC107664526,LOC107597500,LOC107677429,LOC107587354,LOC107722781 coding downstream 394366 8120189 ~ 8126047 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786,LOC107587352 coding downstream 401840 8127663 ~ 8128952 (+)
tcnba tcnl coding downstream 431067 8156890 ~ 8158237 (+)
G34071 NA non-coding upstream 2436 7710303 ~ 7711178 (+)
G34064 NA non-coding upstream 72882 7640376 ~ 7640732 (+)
G33899 NA non-coding upstream 224651 7447776 ~ 7488963 (+)
G33903 LOC107723325,LOC107598017,LOC107740964,LOC107587450,LOC107681865,LOC107660777 non-coding upstream 230627 7464371 ~ 7482987 (+)
G33888 NA non-coding upstream 379836 7333469 ~ 7333778 (+)
G34104 NA non-coding downstream 139344 7865167 ~ 7934699 (+)
LOC122345061 NA non-coding downstream 186269 7912092 ~ 7931348 (+)
G34116 NA non-coding downstream 267329 7993152 ~ 7996158 (+)
G34163 NA non-coding downstream 403282 8129105 ~ 8131150 (+)
G34358 NA non-coding downstream 702660 8428483 ~ 8431274 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 38978 7672827 ~ 7674636 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other upstream 116094 7592963 ~ 7597520 (+)
svopb LOC107723362,LOC107681854,LOC107598053 other upstream 146351 7558940 ~ 7567263 (+)
G33891 myhz1.2,myhz2,myhz1.1,ns:zf-e68,myhc4,mmyhl1,myhb,mmyhl2,LOC107723326,LOC105016875,LOC105016873,LOC106565367,LOC107088603,LOC107384188,LOC107093413,LOC103461378,LOC108241321,LOC107083053,LOC107083052,LOC107378336,LOC106938339,LOC106596646,LOC106596400,LOC106585883,LOC106597527,LOC106594844,LOC108261437,LOC106595486,LOC106598139,LOC108261508,LOC103379498,LOC103379499,LOC108444093,LOC101482140,LOC107660779,LOC108443910,LOC108415768 other upstream 193373 7420140 ~ 7520241 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other downstream 28251 7754074 ~ 7797968 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other downstream 275755 8001578 ~ 8010599 (+)
snx19a snx19a,LOC107597619,LOC107681657 other downstream 563897 8289720 ~ 8305446 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other downstream 1138379 8864202 ~ 8871518 (+)
si:ch211-102c2.4 NA other downstream 2070558 9796381 ~ 9799358 (+)

Expression


Co-expression Network