G34480 (LOC107560223,LOC107711009,LOC107681213)


Basic Information

Item Value
gene id G34480
gene name LOC107560223,LOC107711009,LOC107681213
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8993896 ~ 9001220 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU50809
ctttaaaatatatgtaagtgAGAAGAAACATCAAAGTGTCAGATTCCAGATCATCAACAGCTTGTTCTATTTTCCCGTGTGTCTTTTCCTTCACATATGTGTTAATTTTATCCAGTGTTTCTTTGATGCTGAAATCCACAGTGAAGCCATCAGAGTGGTAAAACTCCTTTATCTCCTTCAAGAACTCAGGAAGGAGCTTTGATTTGTCGCTTGCATATACAGCAGTGCCAACATCGATGTCCACCCCCGTCCTCTGGTCGATTTCTTCCAGGAGACTGTGGAACATCTGGTGCATTTCTTCAGTGCTGAAGACCGAGCTGTTATAGCCGATGCCGCTGAGAAGCTGCTCTTTGGTTTCTCCACCGGCTCCTAAAGACAGCTCAGAAAGGGCCATGGATATGCTGAGGGGAGAGAAGAAGATGTTCTTGGACCGATACTCTGGCATTTCTACAAGCCTCTTGTACAGGTCAAAAGCAAAATCATTGTTCATCTTTATTAATGATGGGAGTTTATCACTGATGGGAGGTTGTGGTGAAGTCTCTTGATTTCCATGAACTAATGCAAAAGCACAAAACCACAAATATATGATGTTCCTTTCCATGATTCCTTTTCAAATTGAGCCAATAGATGAATTTAGGCCCT
>TU50811
CAATTCCCAAAAAGTGCTATTTGCatattgaataaatatagaCAGACCACAGAGGTTTTATGCaacatatcatttatttatttttttaactagaTTTGATCCATTTTCCAATTAAGTAAAAGTTGCCACTTGGCAGATAAGTATACATTCACCTGAGGAAACAGAAAAGACCATGCTTAAAGACCTCTGGAAGAAATACTGAGTATCTCTGTCTAACAGAAATATAATGGCtgaacagtttttaaatcaTGGCCATCTTCTGGCTAATGTTGTCCTGACATCTTAAATGTCACATTACTGTTTTTCCACCGGATTGACAACTTTTCCAAAGAAGAggatgttgtcatttttttggtcAGTGATAAACATCATGAATGGACGGTCAAAACTCAAAGTGTCCAGTGGGCTGTAGGACATTGGTCCGAATTCAACAGTTgtcactgctgctgctgtggtTCCTTTCTCATCTATATCCAGAGTGGCCTTATGCAAAACCTGAAAACGAATCAGAGTGAATcctcttaaaaaatgtatgtttttttaaagcaatacatTAAATATCTTGATTTGGTTTCACATAGTGTTTTAGAAAGCGATCTAGGAATATTACCTttgaaattagcattttttcctcTGAAATCCTTGTGAAGTTGGCTTTATCTGTAAACATATCAGCCATTCCCATtcctttcaaaatatctttcaggGAATATGATGTCTTCAGAGAGAGCTTGGGGACAAAGATATCAGTTtttctgaaAGCTCCCCTCCACTTTTCAATGTGCTGTCTAGAGATGGCCATCTCCAGATCTTTGATGGTCTTAGCAGGCCTATGATTGTCTGGTACAGCCAGAAACATGGAGAAAGAGTCGTTGTAGTCTAGACAGAGGACTTTAGTTGTGAGTTCCACATCATAATAAACTTTGAGGGATTCATACTGGTGCATCATTTGTACTGGAACGGTGGTTTCAGCGTCCACATGAAATGTACTCTGTCGGGTCTTGCTTGGGTTAAATGGCATGTCCCATTTTCCTTTaatatatgtaagtgAGAAGAAACATCAAAGTGTCAGATTCCAGATCATCAACAGCTTGTTCTATTTTCCCGTGTCTTTTCCCTTCACATATGTGTTAATTTTATCCAGTGTTTCTTTGATGCTGAAATCCACAGTGAAGCCATCAGAGTGGTAAAACTCCTTTATCTCCTTCAAGAACTCAGGAAGGAGCTTTGATTTGTCGCTTGCATATACAGCAGTGCCAACATCGATGTCCACCCCCGTCCTCTGGTCGATTTCTTCCAGGAGACTGTGGAACATCTGGTGCATTTCTTCAGTGCTGAAGACCGAGCTGTTATAGCCGATGCCGCTGAGAAGCTGCTCTTTGGTTTCTCCACCGGCTCCTAAAGACAGCTCAGAAAGGGCCATGGATATGCTGAGGGGAGAGAAGAAGATGTTCTTGGACCGATACTCTGGCATTTCTACAAGCCTCTTGTACAGGTCAAAAGCAAAATCATTGTTCATCTTTATTAATGATGGGAGTTTATCACTGATGGGAGGTTGTGGTGAAGTCTCTTGATTTCCATGAACTAATGCAAAAGCACAAAACCACAAATATATGATGTTCCTTTCCATGATTCCTTTTCAAATTGAGCCAATAGATGAATTTAGGCCCT
>TU50814
GAATAACACAAAGGTAACGTCTTGCTGTcactctttattatttatacttcTCTCATTGCAATACTTTTCAAGTATGCAATACTGCACCTACAGTGGCTATTTCAGTGCCTGACATTTAATTGTCTCTctgtgaattattatatttaataccaGTCTTTAGTCACAGCTGAGTATAATGTATGGTGTATGAGTGATTGCAGGAAACAGCAGGAAAGATAAGTGACAGTTGAGTCCAGttgcttttctctttattttattgaaatcttTTGAAGACGTCTTACCATTTCCATTTAACGTAGCCATAATGGAAGCAGACATTCAGTATTAAAGGAGATCTAGAAACCATCTTCATACAGTACGTAACACCAACAGTTGTTTTAGAAAAATTCTAAAGGGGTTGGCATGATGATAGTTGTTAAATTATGGCCATCTGCTGGATAAATCTTGAATGTCACACTGCTGGGTTGACAACTTTTCCTAAGAACAGGATGTGGTCATTTTTTTGGTCAGTGATGAAGATCATGAATGGACGGTCAAAACGGAACAGCATTGGTAACAAAGCAACTTTGATTTCAATTGTGGTCACTGCTGCTGCGGTGGTTCCCTCCTCATCTACATCCAGGGTGGCTTTATGcaaaaccTTGAAACATAGAAATTTTCTTCTGCAATTCCTGAGAAGTCAGCTTTATGTGAAAACATGTCTGTTATTCCCATTCCCTTCAAAATATCGTTTAGGGTATAGTCTGTCTTCAGAGACAGCTTGGGAACATAGACGTCAAGTTTTCTGTGGAATGAATggataataaatgaatgatcaaaaaataaataaataaatatatatataattttacctTTTCCAGACAGATCCCCTCCACTTTTCAATGTGCTGTCTAGAGATGGCCTTTTCCAGATCATTGATGGtcagatcttttttttcatctggtATAGCCAGAAACATGGAGAAAGAGTCGTTGTAGTCTAGGCAGAGGACTTTAGTAGAGAGTTCAGCATCATAATAAACTTTGAGAAGTTCGGTTTGGTGCATCATTTGTACTGGAACGGTGGTCTCATTATCCACATGAAATATATCCTCACTGGTTTTGTTTGGATTAAATGGCATGTCCCATTTTCCttaaaatatatgtaagtgAGAAGGAACATTAAAGTATTGGGATCCAGAGAATCAACAGCTCGATCTATTTTCCCATGTGTTTTTTCCTTCAcatattcattaattttatcTAATGTTTCTGCAGCTTTGAAATCCACAGTGAAGCCATCAGAGTGGTAAAACTCCTTCATGTTCTCCAGGAACTTAGGATGAGGTTTAGATTTGTCGCTTGCATATAGAGCAGTGCCGACATCGATGTCCACCCCCGTCCTCTGGTCGATTTCTTCCAGGAGACTGTGGAACATCTGGTGCATTTCTTCAGTGCTGAAGACCGAGCGGTTATAGCCGATGCCGCTGAGAAGCTGCTCTTTGGTTTCTCCACCGGCTCCTAAAGACAGCTCAGAAAGGGCCATGGATATGCTGAGGGGAGAGAAGAAGATGTTCTTGGACCGATACTCCGGCATTTCTACAAGCCTCTTGTACAGGTCAAAAGCAAAATCATTGTTCATCTTTATTAATGATGGGAGTTTATCACTGATGGGAGGTTGTGGTGAAGTCTCTTGATTTCCATGAACTAATGCAAAAGCACAAAACCACAAATATATGATGTTCCTTTCCATGATTCCTTTTCAAATTGAGCCAATAGATGAATTTAGGCCCT
>TU50825
ctttaaaatatatgtaagtgAGAAGAAACATCAAAGTGTCAGATTCCAGATCATCAACAGCTTGTTCTATTTTCCCGTGTGTCTTTTCCTTCACATATGTGTTAATTTTATCCAGTGTTTCTTTGATGCTGAAATCCACAGTGAAGCCATCAGAGTGGTAAAACTCCTTTATCTCCTTCAAGAACTCAGGAAGGAGCTTTGATTTGTCGCTTGCATATACAGCAGTGCCGACATCGATGTCCACCTCCGTCCTCTGGTCGATTTCTTCCAGGAGACTGTGGAACATCTGGTGCATTTCTTCAGTGCTGAAGACCGAGCTGTTATAGCCGATGCCGCTGAGAAGCTGCTCTTTGGTTTCTCCACCGGCTCCTAAAGACAGCTCAGAAAGGGCCATGGATATGCTGAGGGGAGAGAAGAAGATGTTCTTGGACCGATACTCGGGCATTTCTTCAGTGCTGAAGACCGAGCTGTTATAGCCGATGCCGCTGAGAAGCTGCTCTTTGGTTTCTCCACCGGCTCCTAAAGACAGCTCAGAAAGGGCCATGGATATGCTGAGGGGAGAGAAGAAGATGTTCTTGGACCGATACTCTGGCATTTCTACAAGCCTCTTGTACAGGTCAAAAGCAAAATCATTGTTCATCTTTATTAATGATGGGAGTTTATCACTGATGGGAGGTTGTGGTGAAGTCTCTTGATTTCCATGAACTAATGCAAAAGCACAAAACCACAAATATATGATGTTCCTTTCCATGATTCCTTTTCAAATTGAGCCAATAGATGAATTTAGGCCCT

Function

NR:

description
PREDICTED: corticosteroid-binding globulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50809 False 642 lncRNA 0.42 3 8993896 9001220
TU50811 False 1671 lncRNA 0.39 4 8995398 9001220
TU50814 True 1772 lncRNA 0.39 3 8999260 9001220
TU50825 False 792 lncRNA 0.44 3 8993896 9001220

Neighbor

gene id symbol gene type direction distance location
npdc1b LOC107709839,LOC107560231,LOC107690676,LOC107681258 coding upstream 2873 8972917 ~ 8991023 (+)
niban2b fam129bb,LOC107709838,LOC107560233,LOC107681249,LOC107715759,LOC107690674,LOC107587422 coding upstream 21828 8950384 ~ 8972068 (+)
whrnb dfnb31b,LOC107681240,LOC107560234,LOC107690673,LOC107715750,LOC107709820 coding upstream 55824 8886982 ~ 8938072 (+)
noxa1 LOC107709691,LOC107560237,LOC107681242,LOC107690672,LOC107587322 coding upstream 108032 8878270 ~ 8885864 (+)
cacna1ba cacna1ba,LOC107690670,LOC107757972,LOC107681248 coding upstream 177889 8725190 ~ 8816007 (+)
traf2a traf2a,LOC107587320,LOC107690679,LOC107715757,LOC107560229,LOC107709841,LOC103036375,LOC108423724 coding downstream 7306 9008526 ~ 9016381 (+)
tncb tnc,LOC107715756,LOC107681236,LOC107690680,LOC107709842,LOC107560216 coding downstream 71560 9072780 ~ 9104866 (+)
b3galt8 LOC107709844,LOC107681239,LOC107560227,LOC107754785,LOC107587317,LOC107690696 coding downstream 104280 9105500 ~ 9107204 (+)
zgc:162952 zgc:162952,LOC107681237,LOC107709843,LOC107715755,LOC107690681 coding downstream 106729 9107949 ~ 9123877 (+)
zgc:110329 zgc:110329,LOC107673367,LOC107709832,LOC107594991,LOC107587313,LOC107721550,LOC107656494,LOC108434515 coding downstream 277897 9279117 ~ 9287528 (+)
G34472 NA non-coding upstream 54526 8938265 ~ 8939370 (+)
G34470 NA non-coding upstream 119201 8874095 ~ 8874695 (+)
G34466 NA non-coding upstream 129695 8862846 ~ 8864201 (+)
G34449 NA non-coding upstream 351215 8642191 ~ 8642681 (+)
G34418 NA non-coding upstream 428400 8564645 ~ 8565496 (+)
G34689 NA non-coding downstream 245690 9246910 ~ 9248013 (+)
G34688 NA non-coding downstream 247039 9248259 ~ 9251790 (+)
G34725 NA non-coding downstream 359639 9360859 ~ 9433507 (+)
G34747 LOC105896809,LOC106958509,LOC107671222,LOC107690788 non-coding downstream 477385 9478605 ~ 9565907 (+)
G34840 NA non-coding downstream 763916 9765136 ~ 9765347 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 122378 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 688450 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 983297 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 1195928 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 1319260 7672827 ~ 7674636 (+)
si:ch211-102c2.4 NA other downstream 795161 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 1062997 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 1716311 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 1925603 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 2045259 11046479 ~ 11064446 (+)

Expression


Co-expression Network