G35304 (prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505)


Basic Information

Item Value
gene id G35304
gene name prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11382670 ~ 11387170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU51991
CACAAACGTGTGCAGTTCatacaatgaaatattttactcaTTCCGCATTCAGACAAGATACAATCAGTATTTTCTCATTCGTTAAGGCAAACGGCATAGACCTATCAAATCAAGCTCTGTCATCTTACTGCTCCAGTGTAATATGTAGGATAGTTAGGTGTATTATCTCTGATCTCGCTCGAGTGGCATGGACAAACCTACCCCAAGAAGAAACACACTGACCCACAGagataagcaaaaaaaaacaaacaaaacaaaaatatagttCAACAGGCTGATTGTTTGGGCCATTTCGACAGTAGCCACTAAATTAAGTGTATGCGCGTGTATTCAGTCAAATCTAAAGGGCACTTCACAGATCTGTGTTCAAGCAGTCAAAAATGCTGCCTAactgtaaacataaacaaacataaaagaaacTTCGtcacaactttaaaaaaaaaaaaaaaatgacctaaTTTCAGATTTTGGCTTTCACCCAGTCAAAAGACCACAAAGAgatgtaaattaataaagctacacaggagaaaaaaacaaaaacaaaactaaaacctgagaaggcaaaagaaaaaaaaccagcTGCCATAATAATGGCAATCTAGAGGGGCTCAACCCATATTCTATTTCAATCTAGCCACGTGTTAGTAATTAGACTCTATAACAAAACTAAGGtgttacaaaaaaagtcataaacaTCTATCGTACCTTTAAGTTTCACAACAAACTTGAAAGCAATAAAATCCAGTATTAAAGGATATCTTTCATTATAAGCAAGGGCTGTCATCTAACTGTTGGTTTTAAAGTCTCTTTAAAGCAGAAATAACAGACAGCAACATTCAAGTGAATCCTTAGTCCTCAACATGCAGGTAACATTTATATATCCTAGAGTGACAGGTGAAATACAGTGAGTGGAGAGTGAATGGAAATCAAGATTTTAGCGGTCGTTACATATCACAATACCTTTGGGAATAAAAGGTGAGTCAGCGCATGCAGCAGAAAAAGATGTGTAGCACTAAGGGCTTTCGTTCTTTTTATTCACTGTCCAAAATATGTCTTCAGTTAAATGGTGCATGTAAGGAACATGGATTAACAGAGCCAGCAATGATTCTCTGTTATATGAGTTTGTACACAGTGAtggtatgtgtttgtttgtttgtttacacgCATGTATGTTCGTGTTATAAGGGGACATGACTAAACAAGTATGAAACTGACTCCCCGTTATGCGTTCGCCTGATGGCTTCAGCCAGGATCATAGAAATGTCAATCACCTGGAAAGCAAGAGAGAAACAAATTAGTCAACATGCTCTGATCaatgaggaaaaaagaaacCATTTCCGCCATCCAAAAAACGACCAAATCAGGTATAATAATCCAGAATTTAATACCAGTTTACTCTTCTAAAGTGTGGATTCAGCAACATAAATgggaaataattaaaattattttattcagcgagGATGCAATAAAATCCTTTTGAACtctattcatcaaaacattctgtaaaaaaagcaatgcatgaCCGTTTCCACTAAAATAGCAGTGACTCTGGAGAcagaagtaatggctgctgaaaattcagctttccatcacagtaataaattctGTATAGAAAAATAGTAATGTTGAATTATAATAGCATTTTACTATATACCTACTATATGTATCCTGGGCgagcttttgaacagtagtgtatatttatcaacaatttgttttttaaattttatcaaaagtttttaaattgtgaaacaTTAGTAGTCTTGATATCACTAATTTCCCCCTTCACTTTGATTCAGATTTAACAGCTTGATAATCAGTTctgattaacattttttatactatacaagagttaaaccaaaaaaatttcacatttcagttttcttaaaacaaataattattcagAAATTGTAATTTTCTGTGCCTGAATCTTGCTGCAGTGTTTGATTTTGTCCTCCTGTGGAATTGTGTTGGTGACCACAACCGCCTCAAAGTTGGCATTGTTGATCCGAGAAATGGCTGGCCCGGAGAAGATCCCATGAGTCAAGATGGCGTACACTTTAGTGGCTCCCGCAGACACCAATCTGAAAGAAACAGAGATACGCAAGcaattaaacaaacaagcagGAACATGAAGGCATGAAGTCTGACAAATCAGCAGGATAATCATGAATGTGCATCTGTTTGAGCATGAAAGCAGTTGCGTATCGAGTCTGTCCTCACTTGTCAGCCGCGTGACATATTGTCCCACACGTGTCTGCCATGTCATCCACTAAAATCGCCACTCGGTCCTTCACGTCCCCAACCAGCACCATACGATCCACTTCATTGGCCTTCTTACGTTCCTTATGGATTAGGGCAAAGTCCACATTCAGTCGGTCTGCGATGGATGTCactcaagcacACCTCTTGGCTCCACCGGCATCAGGAGAAACAATGGTGCAATTCTTCCATTCattgatgttttcttttatccATTTGAGGACTGCCGGCTCAGCATACAAGTTATCAACTGGGATGTCAAAGAACCCc
>TU51992
TGTCAGCCGCGTGACATATTGTCCCACACGTGTCTGCCATGTCATCCACTAAAATCGCCACTCGGTCCTTCACGTCCCCAACCAGCACCATACGATCCACTTCATTGGCCTTCTTACGTTCCTTATGGATTAGGGCAAAGTCCACATTCAGTCGGTCTGCGATGGATGTCactcaagcacACCTCTTGGCTCCACCGGCATCAGGAGAAACAATGGTGCAATTCTTCCATTCattgatgttttcttttatccATTTGAGGACTGCCGGCTCAGCATACAAGTTATCAACTGGGATGTCAAAGAACCCc
>TU51993
TGTCAGCCGCGTGACATATTGTCCCACACGTGTCTGCCATGTCATCCACTAAAATCGCCACTCGGTCCTTCACGTCCCCAACCAGCACCATACGATCCACTTCATTGGCCTTCTTACGTTCCTTATGGATTAGGGCAAAGTCCACATTCAGTCGGTCTGCGATGGATGTCactcaagcacACCTCTTGGCTCCACCGGCATCAGGAGAAACAATGGTGCAATTCTTCCATTCattgatgttttcttttatccATTTGAGGACTGCCGGCTCAGCATACAAGTTATCAACTGGGATGTCAAAGAACCCctaagaacacacacaaaaacacattctatCAAAATcaatccagaaaaaaagaaaagaaaataatttcagtGTTGA

Function

symbol description
prps1a Predicted to enable ATP binding activity and ribose phosphate diphosphokinase activity. Predicted to be involved in 5-phosphoribose 1-diphosphate biosynthetic process and purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleobase-containing small molecule metabolic process and phosphorylation. Predicted to be part of ribose phosphate diphosphokinase complex. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; notochord; and yolk syncytial layer. Used to study Charcot-Marie-Tooth disease X-linked recessive 5. Human ortholog(s) of this gene implicated in Arts syndrome; X-linked deafness 1; X-linked recessive disease (multiple); gout; and retinitis pigmentosa. Orthologous to several human genes including PRPS1 (phosphoribosyl pyrophosphate synthetase 1).

NR:

description
ribose-phosphate pyrophosphokinase 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51991 True 2529 lncRNA 0.37 2 11382670 11387096
TU51992 False 308 lncRNA 0.49 2 11384891 11387096
TU51993 False 382 lncRNA 0.45 2 11384891 11387170

Neighbor

gene id symbol gene type direction distance location
iqcd LOC107733227,LOC107672405,LOC107597236 coding upstream 17730 11362066 ~ 11364940 (+)
plp1b LOC107597234,LOC107680389,LOC107672433,LOC107592271 coding upstream 52364 11324743 ~ 11330306 (+)
nlgn3b nlgn3b,LOC107672382,LOC107680388,LOC107733224,LOC107597232,LOC103045798 coding upstream 59807 11304365 ~ 11322863 (+)
cchcr1 LOC107680404,LOC107732622,LOC107747821,LOC107687693,LOC107592355 coding upstream 123190 11250625 ~ 11259480 (+)
stag2a stag2a,LOC107680370,LOC107732619,LOC107597229,LOC107687653,LOC107592356 coding upstream 133506 11233407 ~ 11249164 (+)
uprt uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 coding downstream 13279 11400449 ~ 11403283 (+)
si:dkey-237j10.2 LOC107672540,LOC107756556,LOC107597242,LOC107748630,LOC107680403 coding downstream 80550 11467720 ~ 11471124 (+)
si:ch211-26b3.4 si:ch211-26b3.4,LOC107597246,LOC107756552,LOC107565423,LOC107741180,LOC107680385,LOC107672834 coding downstream 85942 11473112 ~ 11512262 (+)
apool apool,LOC107672608,LOC107756555 coding downstream 127239 11514409 ~ 11518903 (+)
zgc:113208 zgc:113208,LOC107672636,LOC107597249,LOC106567768 coding downstream 217657 11604827 ~ 11609386 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding upstream 173265 11204500 ~ 11209405 (+)
G35267 NA non-coding upstream 194976 11187254 ~ 11187694 (+)
G35229 NA non-coding upstream 363478 10945056 ~ 11019192 (+)
G35202 NA non-coding upstream 544303 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 566369 10813457 ~ 10816301 (+)
G35309 NA non-coding downstream 18358 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 26871 11414041 ~ 11414688 (+)
G35322 NA non-coding downstream 54369 11441539 ~ 11442411 (+)
G35316 NA non-coding downstream 76699 11463869 ~ 11465339 (+)
G35350 NA non-coding downstream 143348 11530518 ~ 11531244 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 79239 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 232445 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 318224 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 448917 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 646611 10717531 ~ 10736059 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 251346 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 537058 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 861968 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 1126843 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 1316182 12703352 ~ 12705245 (+)

Expression


Co-expression Network