glra4b (glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905)


Basic Information

Item Value
gene id glra4b
gene name glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11638516 ~ 11652683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU52094
TTtccattatttttcaatttactgtacaaccttttaaaaattcagcattgtacatttttaaaaagactgtCCTCATGAGGACCGCTAGTTTCTAGCTGATGAAATCAACCACAAATCTTTTACTACATAAATATCAAATGAATTTGTGTAAGTGCCTTGTTCCAGGTTTTTCATAACGTAAACCCTGaaaacaatgattaaaaatattgaatctCTTGTGCATCCAAAGTTTTACTACGAGTACAAATAGCAGATGTCAAGTCTGGTCAGCAGATATATGCCTCACCTTTCTCTTCTTGTCTCCTCCTAACTCAAAGTGTTTGCATCTCTTAATGGCCAGCATCCTCTTTGAGCGGCAGTTGGGCTCCACGCACTCCAGCCTCAGCACAATCTTCTTTGTGGTTTTAGCCTTTTTTCCGGAAAATAGGCTTTGTCTGTCCTCCATAACCACTCTGCTTTCTGTCGTAACGCCTCTTTCCTagaagaaacaaataaacagatgcATGTTTGGACTACAGACAATGAGCAAAGTGCTAATCTCTCAATCAGCTCTCAAAACTTACCCTGGGCGTACAGAGAGTCCTTGCCCTTCTTGTACTGGGTCACTTTATGTGGCTGGTGCTTTTTGCATTTCTTGCAGTAAGTCCTGCGGGTCTTCGGTACGTTCACCTAAAGATAAGACACGAATAACGTTACCGGcaaagaaattattatattgcCTAGCGTTAGCGCTCAAGCTAATCGGCATTTTCGCTAAATATACAGAACAGTTCGTATTTTAAAGAGTGTGCATTATCATTTTGAATACACGAagccaaaaaaaatacagttttattaaaatacaacttATAGGCGACTACAACTAAAACATCTGCATTACGAGTCGGGAAATCGGCAAATAGAGGAGAATAACCATCTAACTCATCGCATAAACTACCAAATACAACATTTTACGTGGTTCCAAAGATGTATACATTAACACCGTACAGATTGTTTGCGTCTAAGTGTTTCACATCTTTAGGATTAAAACAGATTTTGGACGAAACTTCACAGGACGATATTACGCACCATGGTTGCCCTCGCGGCGCAGGAGCAAAGAGGAAGTGCATACGTCACTCAGCGCATTAGTACCGGGTCGCACGAGAGAGGTCTCGCGCTGTTTGCTGTTGCACGATG
>TU52095
CGCGGAATACATAATTTGCTTTACCCCAACAGCTGCACAAGACACATAACAGATCTGCTGCTAAAGCAACActtctgtatgtatttatggaAGCAAAGCTGCCATTTTGGTCCCCCACAGTGCATTTGTGTGGAACTTCAAATAGGAAACAGTTTGATACTGACAAATGAAGGGCAAGAGCATAACTGTATACAACTTTTATTGACAGTGATGGTAAACCACAACAGAAGCATTTGGCCCAGCTCAGAACTGGATGACCTGGCCCCTTTCTCTTCTTGTCTCCTCCTAACTCAAAGTGTTTGCATCTCTTAATGGCCAGCATCCTCTTTGAGCGGCAGTTGGGCTCCACGCACTCCAGCCTCAGCACAATCTTCTTTGTGGTTTTAGCCTATGGCACAAAGAGGGACAAAATTAATATGCAAACATCCATACAATCAAATAATAGCAAAATCTTTGCTCCCCCACATACAATATAGATCCAGattcaattaaaatgcttaGGTGGTAATGTGGAAAGTTCAAAGGCTCATGTACACTTGAAATGTACAATAGGCTGTTTATCTGATCACAAATGGAAGCGATCACTGTTGCACATGCAACCTGAACGCACCTCCTGTCACCGGCTGTGATGTTTACACCACAAATGTGACGTGCAGAACAAATGACTGAAAAGTCTGAAATTTACATAATGAGAACTAGGaatatttgttacaaaaaccaaTCAATCTTCGGAGGACATGTGGTAACCCCCCGAAGGTGTGTAGGTTAGTTTCacaacatatatacatatataataacgGAGCTTCAAAATTATGGCCGCTATCTacgagcattaccaagcttggaaaagccaagaaaaaaaaaaaaccttcctgACTGTGTTAATCTGAAATAAGTCATACCTATGATGGCTTGGGGTGAGTAAACTCtgccataattttcatttacagGTGAACTAATCCTGTAAGATCAATATGAATCCAAAATCCAATACAtcaatatttagtaaaataccAAAGACATTTAACCGTGCCAAAAACTACATATACACTACTAACACTAAAAACGTCAGGCCTGCATGCTTCACTTGTCTACACTATAGATTTCAAAATACATGTAAACTACATGGAAATGAAATCGTGTTAGAATTATAGAAACTTAACTGAAAAATACAACAACGTTGCTTTGCAGCAATATCAAAAGACTCCTGGTTTGTGTCAAACTTTTGCACCCATACTCCTGATACCAACCAGCAAGACTCCAACATACCTTTTTCCGGAAAATAGGCTTTGTCTGTCCTCCATAACCACTCTGCTTTCTGTCGTAACGCCTCTTTCCTagaagaaacaaataaacagatgcATGTTTGGACTACAGACAATGAGCAAAGTGCTAATCTCTCAATCAGCTCTCAAAACTTACCCTGGGCGTACAGAGAGTCCTTGCCCTTCTTGTACTGGGTCACTTTATGTGGCTGGTGCTTTTTGCATTTCTTGCAGTAAGTCCTGCGGGTCTTCGGTACGTTCACCTAAAGATAAGACACGAATAACGTTACCGGcaaagaaattattatattgcCTAGCGTTAGCGCTCAAGCTAATCGGCATTTTCGCTAAATATACAGAACAGTTCGTATTTTAAAGAGTGTGCATTATCATTTTGAATACACGAagccaaaaaaaatacagttttattaaaatacaacttATAGGCGACTACAACTAAAACATCTGCATTACGAGTCGGGAAATCGGCAAATAGAGGAGAATAACCATCTAACTCATCGCATAAACTACCAAATACAACATTTTACGTGGTTCCAAAGATGTATACATTAACACCGTACAGATTGTTTGCGTCTAAGTGTTTCACATCTTTAGGATTAAAACAGATTTTGGACGAAACTTCACAGGACGATATTACGCACCATGGTTGCCCTCGCGGCGCAGGAGCAAAGAGGAAGTGCATACGTCACTCAGCGCATTAGTACCGGGTCGCACGAGAGAGGTCTCGCGCTGTTTGCTGTTGCACGATG
>XM_043239471.1
CCAGAGTGCATCGGAATGGGCGCCCTGCCCCTCCAAAACACATCTGCTTACTGAGATTTAGCCACAGGACACCAGGGAGGAAAAGAGAGCAGCTGAAGAGTGGAAGGATGTTTTCTCTGTTCTGGAGGATCCTGCTGGAGCTCTTACTGGTTTGGTGGATGTTTGAAGGGGTCATCAGGTGTGTGTTTAGTAAGGAGCTGAAATCGCCCAGCAGCAGGGTGAAGCCCATGTCACCATCTGATTTTCTGGATAAATTAATGGGAAAAACATCTGGATATGATGCTCGAATCAGGCCTAACTTTAAAGgtccTCCAGTAAATGTTACTTGCAACATTTTTATCAACAGCTTTGGTTCCATCACAGAAACCACCatgGATTATCGGCTGAACGTTTTCTTGCGGCAGCAGTGGAATGACCCACGGCTGGCTTATAAAGAGTATCCAGATGATTCCCTGGATCTGGACCCATCCATGCTGGACTCCATCTGGAAGCCAGACTTGTTCTTCGCCAATGAGAAAGGCGCCAACTTTCACGAGGTCACCACGGACAACAAACTGCTGAGGATTTTCCAGAATGGAAATGTGCTGTATAGCATCAGacTGACTCTGATTCTGTCGTGTCCTATGGACCTGAAGAATTTTCCAATGGACATACAGACCTGTACTATGCAGTTAGAGAGCTGTAAGAGTCTCTATCAAATAATCTCACATTtatctcatttttcttttatatgctgctcattatattatattatatgctgCTCATTTATATGCCTTCTCTCTCTAGTTGGCTACACTATGAATGATCTGATATTTCAGTGGTTGGATGAAGGCCCAGTGCAAGTAGCTGATGACCTTATGCTGCCCCAGTTTGTCCTGAAAGAGGAGAAAGATCTCGGATACTGTACAAAACACTATAACACTGGTAAATTCACCTGTATAGAGGTGAAATTTCATCTAGAGAGGCAGATGGGTTACTACCTGATCCAGATGTACATTCCCAGCCTCCTAACAGTTATTTTGTCGTGGGTCTCCTTCTGGATCAACATGGATGCCGCCCCGGCCCGTGTTGGCCTGGGCATCACTACAGTTCTCACAATGACAACACAGAGCTCTGGATCCAGAGCATCACTGCCTAAGGTATCGTATGTGAAGGCCATTGACATCTGGATGGCAGTGTGCTTGCTGTTCGTTTTTGCTGCTTTGCTGGAGTACGCGGCTGTTAACTTTGTCTCTCGGCAACACAAAGAATTCTTCAGACTGAGGAGAAAGCTGCGGGAAGAGCAACGCTATAGAGCTGCATCTGGTCAGGCTGGAGGAGCAGAGATGAAGAACAAAAGCAACAACGTCACAGGGAGTACACCGAGCAGAAGCACACAGCGTCACTGCAGTGCCTGTGCACGGGAAGAGCAGTTGGCCTCACAGAATCAGGACATGTACTTCACAGGATACGGGATGGACAGCTGTCTATCTGGAGACGGGCCTCTCTCTGAGGCTGCTGCCATGTTTGCAGGCCTGCCGCCCGGCCACATCCTGTTTGAAATCCGTCGGCGCTTCGTGGAACGAGCAAAGCGAATTGATACCATCTCGCGAGCCGTCTTCCCTCTCAGCTTCCTCGTTTTCAACGTTTTCTATTGGATCACATACAAAGTGCTTAGAAATGAGGATATTCACCCTGCCCTGCAACCCTGACTCCTATTAAGACTTCTGAACTTCCCAGTATCCCATTTTGTGAGCCTGTTTAAATCCAGTGAGGATGAGGTCCCACATCAGGGATATTTGAAATCAAAGCAGTTGAAGAAAGATGCAATGTCTATATGCATGTCTATGGCCACTTTGGAAAAGGTCTAAACCTTTAGTTTTATGCAACGGCTGAATCACTCCTGACCTTTGAGatgctttttctttctcattgaGCACATTtgatccattaaaaataaatgttctaaacaaacattttttgccAGCTTTTTCCTTAGTCATGCATTTAAAGGCAACTACAAATATGGGAGCACTGAAATCTCAAAACTACATTTACATGGATCATGAATTTTGCTTCAACTCTACTGTTCATATTTAACCAACGAAAAATGCACTTTTCAGGATGATCTAATGTAATGTGTGTACTTTCTAGCACAAAAACACCAGGGGATGCCTTTTTAGACAACTTCCTTTCCTACAGCTGCCAAGTTAAGTGTTtcttgcattcattttttaatgtggTGTGTCTCCTTGTTCTGTCCCTGACTACACACAAAACTGTGTAAAAAGTCTAAGTAAAGATTTATCTTCCACCGCGGAATACATAATTTGCTTTACCCCAACAGCTGCACAAGACACATAACAGATCTGCTGCTA
>XM_043239472.1
AGTGGAGGAGAGACCAGAGTGCATCGGAATGGGCGCCCTGCCCCTCCAAAACACATCTGCTTACTGAGATTTAGCCACAGGACACCAGGGAGGAAAAGAGAGCAGCTGAAGAGTGGAAGGATGTTTTCTCTGTTCTGGAGGATCCTGCTGGAGCTCTTACTGGTTTGGTGGATGTTTGAAGGGGTCATCAGGTGTGTGTTTAGTAAGGAGCTGAAATCGCCCAGCAGCAGGGTGAAGCCCATGTCACCATCTGATTTTCTGGATAAATTAATGGGAAAAACATCTGGATATGATGCTCGAATCAGGCCTAACTTTAAAGgtccTCCAGTAAATGTTACTTGCAACATTTTTATCAACAGCTTTGGTTCCATCACAGAAACCACCatgGATTATCGGCTGAACGTTTTCTTGCGGCAGCAGTGGAATGACCCACGGCTGGCTTATAAAGAGTATCCAGATGATTCCCTGGATCTGGACCCATCCATGCTGGACTCCATCTGGAAGCCAGACTTGTTCTTCGCCAATGAGAAAGGCGCCAACTTTCACGAGGTCACCACGGACAACAAACTGCTGAGGATTTTCCAGAATGGAAATGTGCTGTATAGCATCAGacTGACTCTGATTCTGTCGTGTCCTATGGACCTGAAGAATTTTCCAATGGACATACAGACCTGTACTATGCAGTTAGAGAGCTTTGGCTACACTATGAATGATCTGATATTTCAGTGGTTGGATGAAGGCCCAGTGCAAGTAGCTGATGACCTTATGCTGCCCCAGTTTGTCCTGAAAGAGGAGAAAGATCTCGGATACTGTACAAAACACTATAACACTGGTAAATTCACCTGTATAGAGGTGAAATTTCATCTAGAGAGGCAGATGGGTTACTACCTGATCCAGATGTACATTCCCAGCCTCCTAACAGTTATTTTGTCGTGGGTCTCCTTCTGGATCAACATGGATGCCGCCCCGGCCCGTGTTGGCCTGGGCATCACTACAGTTCTCACAATGACAACACAGAGCTCTGGATCCAGAGCATCACTGCCTAAGGTATCGTATGTGAAGGCCATTGACATCTGGATGGCAGTGTGCTTGCTGTTCGTTTTTGCTGCTTTGCTGGAGTACGCGGCTGTTAACTTTGTCTCTCGGCAACACAAAGAATTCTTCAGACTGAGGAGAAAGCTGCGGGAAGAGCAACGCTATAGAGCTGCATCTGGTCAGGCTGGAGGAGCAGAGATGAAGAACAAAAGCAACAACGTCACAGGGAGTACACCGAGCAGAAGCACACAGCGTCACTGCAGTGCCTGTGCACGGGAAGAGCAGTTGGCCTCACAGAATCAGGACATGTACTTCACAGGATACGGGATGGACAGCTGTCTATCTGGAGACGGGCCTCTCTCTGAGGCTGCTGCCATGTTTGCAGGCCTGCCGCCCGGCCACATCCTGTTTGAAATCCGTCGGCGCTTCGTGGAACGAGCAAAGCGAATTGATACCATCTCGCGAGCCGTCTTCCCTCTCAGCTTCCTCGTTTTCAACGTTTTCTATTGGATCACATACAAAGTGCTTAGAAATGAGGATATTCACCCTGCCCTGCAACCCTGACTCCTATTAAGACTTCTGAACTTCCCAGTATCCCATTTTGTGAGCCTGTTTAAATCCAGTGAGGATGAGGTCCCACATCAGGGATATTTGAAATCAAAGCAGTTGAAGAAAGATGCAATGTCTATATGCATGTCTATGGCCACTTTGGAAAAGGTCTAAACCTTTAGTTTTATGCAACGGCTGAATCACTCCTGACCTTTGAGatgctttttctttctcattgaGCACATTtgatccattaaaaataaatgttctaaacaaacattttttgccAGCTTTTTCCTTAGTCATGCATTTAAAGGCAACTACAAATATGGGAGCACTGAAATCTCAAAACTACATTTACATGGATCATGAATTTTGCTTCAACTCTACTGTTCATATTTAACCAACGAAAAATGCACTTTTCAGGATGATCTAATGTAATGTGTGTACTTTCTAGCACAAAAACACCAGGGGATGCCTTTTTAGACAACTTCCTTTCCTACAGCTGCCAAGTTAAGTGTTtcttgcattcattttttaatgtggTGTGTCTCCTTGTTCTGTCCCTGACTACACACAAAACTGTGTAAAAAGTCTAAGTAAAGATTTATCTTCCACCGCGGAATACATAATTTGCTTTACCCCAACAGCTGCACAAGACACATAACAGATCTGCTGCTA

Function

symbol description
glra4b Enables extracellularly glycine-gated ion channel activity. Predicted to be involved in several processes, including chloride transmembrane transport; glycinergic synaptic transmission; and neuropeptide signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in brain; hindbrain; retinal ganglion cell layer; retinal inner nuclear layer; and spinal cord. Orthologous to human GLRA4 (glycine receptor alpha 4 (pseudogene)).

NR:

description
PREDICTED: glycine receptor subunit alpha-2-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0016594 glycine binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52094 False 1176 lncRNA 0.40 2 11650628 11652683
TU52095 False 2035 lncRNA 0.40 2 11650257 11652683
XM_043239471.1 True 2357 mRNA 0.45 9 11638529 11650319
XM_043239472.1 False 2265 mRNA 0.46 10 11638516 11650319

Neighbor

gene id symbol gene type direction distance location
aifm1 LOC107597251,LOC107672651,LOC107733365,LOC107680381 coding upstream 4066 11623389 ~ 11634450 (+)
casp22 LOC107672910,LOC107597346,LOC107735460,LOC107734787 coding upstream 19448 11615592 ~ 11619068 (+)
nono LOC107741185,LOC107756548,LOC107680395,LOC107672625,LOC107565420,LOC107597250 coding upstream 23790 11609770 ~ 11614726 (+)
zgc:113208 zgc:113208,LOC107672636,LOC107597249,LOC106567768 coding upstream 29130 11604827 ~ 11609386 (+)
apool apool,LOC107672608,LOC107756555 coding upstream 119613 11514409 ~ 11518903 (+)
sptbn4a si:dkey-27p18.5,LOC107741189,LOC107733362,LOC107680392,LOC107672682,LOC107565414 coding downstream 3888 11656571 ~ 11680543 (+)
LOC122345658 NA coding downstream 37234 11689917 ~ 11699519 (+)
LOC122344640 LOC107721539 coding downstream 48359 11701042 ~ 11703519 (+)
gpr83 si:dkey-27p18.2,LOC107746247,LOC107672928,LOC107741287,LOC107597348,LOC107663210,LOC107575892 coding downstream 64877 11717560 ~ 11724473 (+)
las1l LOC107672706,LOC107746236,LOC107663224,LOC107741192,LOC107557109 coding downstream 164669 11817352 ~ 11823611 (+)
G35350 NA non-coding upstream 107272 11530518 ~ 11531244 (+)
G35316 NA non-coding upstream 173177 11463869 ~ 11465339 (+)
G35322 NA non-coding upstream 196105 11441539 ~ 11442411 (+)
G35311 NA non-coding upstream 223828 11414041 ~ 11414688 (+)
G35309 NA non-coding upstream 232755 11405528 ~ 11405761 (+)
G35584 NA non-coding downstream 53976 11706659 ~ 11706998 (+)
G35585 NA non-coding downstream 54848 11707531 ~ 11707773 (+)
G35606 NA non-coding downstream 75593 11728276 ~ 11728601 (+)
G35629 NA non-coding downstream 121303 11773986 ~ 11775492 (+)
LOC122345698 NA non-coding downstream 290754 11943437 ~ 11986820 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 335085 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 488291 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 574070 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 704763 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 902457 10717531 ~ 10736059 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 271545 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 596455 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 861330 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 1050669 12703352 ~ 12705245 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other downstream 1151106 12803789 ~ 12807351 (+)

Expression


Co-expression Network