iscu (si:ch211-191d15.2,iscu,LOC107597282,LOC104937683)


Basic Information

Item Value
gene id iscu
gene name si:ch211-191d15.2,iscu,LOC107597282,LOC104937683
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12703352 ~ 12705245 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU52846
TTGTAGTCGGTCATCATGGCGTTAGCAGCTGCAGCCAAGCGCTGTGCATTTTCTGTACTTTTCAGTAGATCTTTGGCAGTACCGGAGCTCAGAATAGCCTGTTCGTATCATAAAAAGGTGGTGGACCACTATGAGAACCCCAGAAATGTTGGTTCTCTAGACAAGAATGCCAAGAACGTAGGCACTGGCTTGGTAGGTGCACCTGCATGCGGGGATGTTATGAAACTACAGATTCAGGTGGACGAGAATGGCAAGATAGTAGACGCCAGATTCAAAACCTTTGGCTGTGGCTCAGCCATTGCTTCCAGCTCACTGGCTACAGAGTAGGTGAAGGGAAAATCGATTGATGAAGCACtgaaaatcaaaaacacagagaTTGCCAAAGAACTTTGTTTACCGCCAGTCAAACTTCATTGCTCTATGCTTGCAGAGGATGCTATCAAGGCTGCATTAGCAGACTACAGACTCAAACAGAAAGACGACAAGGAGACGTTGGTGGAAGCTCGAAATTAATGTCCTCATTCACAGACGAGTCACCGCCTCCCACTCTTATTGTGACTCcgaaatattttatactttatatgcTTTCTGAggataaaataaacacattagcAAGCGTATACCATTGCTACTCTGTTCACGCTGCATTTGCATTACTGGTTTGAAGTGGCTTGCATTTACCGACTGTGAAAGATCTTTTGGAATAAAGTTTTCTCCTGTATCTCTGAATCACGCACATGAAATGTCCTCTATATCAGCTCTATATACTGCAAGTTTGTAAATGCACTCTGCTACACTGCATAAAAAGGAAAGTAGGggatttgaaaaatgtttatttgtttaggtTTTCAGAGGGATCATTATAGTTTTGGCAGTGATTTGTTGGCAAAAAAAACGAATTTGACCTTGGTGCTGTATTATTTGTTGCAAAAGTAATAAAGATGTAAATATTCAT
>XM_043238274.1
CCTTGTATATGCAGTAACGTTGTAGTCGGTCATCATGGCGTTAGCAGCTGCAGCCAAGCGCTGTGCATTTTCTGTACTTTTCAGTAGATCTTTGGCAGTACCGGAGCTCAGAATAGCCTGTTCGTATCATAAAAAGGTGGTGGACCACTATGAGAACCCCAGAAATGTTGGTTCTCTAGACAAGAATGCCAAGAACGTAGGCACTGGCTTGGTAGGTGCACCTGCATGCGGGGATGTTATGAAACTACAGATTCAGGTGGACGAGAATGGCAAGATAGTAGACGCCAGATTCAAAACCTTTGGCTGTGGCTCAGCCATTGCTTCCAGCTCACTGGCTACAGAGTAGGTGAAGGGAAAATCGATTGATGAAGCACtgaaaatcaaaaacacagagaTTGCCAAAGAACTTTGTTTACCGCCAGTCAAACTTCATTGCTCTATGCTTGCAGAGGATGCTATCAAGGCTGCATTAGCAGACTACAGACTCAAACAGAAAGACGACAAGGAGACGTTGGTGGAAGCTCGAAATTAATGTCCTCATTCACAGACGAGTCACCGCCTCCCACTCTTATTGTGACTCcgaaatattttatactttatatgcTTTCTGAggataaaataaacacattagcAAGCGTATACCATTGCTACTCTGTTCACGCTGCATTTGCATTACTGGTTTGAAGTGGCTTGCATTTACCGACTGTGAAAGATCTTTTGGAATAAAGTTTTCTCCTGTATCTCTGAATCACGCACatgaaaataaactctttatttcCTAAAGATCTCTCACTCTTACATGAAATGTCCTCTATATCAGCTCTATATACTGCAAGTTTGTAAATGCACTCTGCTACACTGCATAAAAAGGAAAGTAGGggatttgaaaaatgtttatttgtttaggtTTTCAGAGGGATCATTATAGTTTTGGCAGTGATTTGTTGGCAAAAAAAACGAATTTGACCTTGGTGCTGTATTATTTGTTGCAAAAGTAATAAAGATGTAAATATTCATGTTG

Function

symbol description
si:ch211-191d15.2 Predicted to enable iron ion binding activity and iron-sulfur cluster binding activity. Predicted to be involved in neuron projection regeneration. Predicted to act upstream of or within iron-sulfur cluster assembly. Orthologous to human ISCU (iron-sulfur cluster assembly enzyme).
iscu Enables molecular adaptor activity. Involved in negative regulation of iron ion import across plasma membrane; positive regulation of aconitate hydratase activity; and positive regulation of mitochondrial electron transport, NADH to ubiquinone. Located in cytosol and mitochondrion.

NR:

description
PREDICTED: iron-sulfur cluster assembly enzyme ISCU, mitochondrial

GO: NA

KEGG:

id description
K22068 ISCU; iron-sulfur cluster assembly enzyme ISCU, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
TU52846 False 955 TUCP 0.41 6 12703371 12705241
XM_043238274.1 True 1021 mRNA 0.41 5 12703352 12705245

Neighbor

gene id symbol gene type direction distance location
ficd ficd,LOC107741218,LOC107711781,LOC107597275 coding upstream 19625 12680681 ~ 12683727 (+)
wscd2 wscd2,LOC107597274,LOC107743343,LOC107741214,LOC107696066 coding upstream 64078 12595277 ~ 12639274 (+)
si:ch211-225b11.1 si:ch211-225b11.1,LOC107743342,LOC107597273,LOC107654634,LOC107595947,LOC107696069,LOC107741213 coding upstream 123641 12564192 ~ 12579711 (+)
pik3ip1 pik3ip1,LOC107576614,LOC107654636,LOC107741209,LOC107696071,LOC107595949,LOC107743346 coding upstream 163532 12532379 ~ 12539820 (+)
camk2b1 camk2b1,camk2b,LOC107696072,LOC107741206,LOC108255499,LOC108444312,LOC102293296,LOC100695100,LOC103134902,LOC107386224,LOC107103247,LOC108242787 coding upstream 193344 12457911 ~ 12510008 (+)
dao.3 LOC107727161,LOC107654625,LOC107597279,LOC107741224 coding downstream 88974 12794219 ~ 12797438 (+)
LOC122346075 LOC107654625,LOC107597279,LOC107741224,LOC107727161,LOC107696048 coding downstream 92879 12798124 ~ 12802870 (+)
usp30 usp30,LOC107727160,LOC107741225,LOC107597278,LOC107696057,LOC100537262 coding downstream 115360 12820605 ~ 12826178 (+)
pxmp2 pxmp2,LOC107597355,LOC107595932,LOC107727154 coding downstream 121345 12826590 ~ 12829604 (+)
ptger4b ptger4b,LOC107700922,LOC107757528,LOC107596171,LOC107596756,LOC107655926 coding downstream 180984 12886229 ~ 12892279 (+)
G35843 NA non-coding upstream 31146 12567184 ~ 12672206 (+)
LOC122345920 NA non-coding upstream 56264 12645284 ~ 12647088 (+)
G35864 NA non-coding upstream 61707 12640267 ~ 12641645 (+)
G35855 NA non-coding upstream 152172 12548666 ~ 12551180 (+)
G35834 NA non-coding upstream 159264 12536738 ~ 12544088 (+)
G35847 NA non-coding downstream 62703 12767948 ~ 12768550 (+)
G35903 NA non-coding downstream 177015 12882260 ~ 12882512 (+)
G35904 NA non-coding downstream 179760 12885005 ~ 12885284 (+)
G35905 NA non-coding downstream 180086 12885331 ~ 12885934 (+)
G36062 NA non-coding downstream 403387 13108632 ~ 13108853 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 174562 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 447680 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 760242 11924228 ~ 11943110 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other upstream 1050669 11638516 ~ 11652683 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 1399921 11266642 ~ 11303431 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other downstream 98544 12803789 ~ 12807351 (+)
ins ins,LOC107596207 other downstream 1278852 13984097 ~ 13985706 (+)
G36495 NA other downstream 1585175 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 1594798 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 1627778 14333023 ~ 14337765 (+)

Expression


Co-expression Network