G37331 (LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573)



Basic Information


Item Value
gene id G37331
gene name LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17354606 ~ 17357759 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU55087
tattccATAAGGTAGTCATctataaaaggaaataaacaaatgcatactTTGCTCGTAGTGttctaattatattatttatttatatattccagCATATAATCTCCGCTTATAAATATTCAATGTGCTGGGTGAAATTTCAACAGCAAGAGAACGAACAATTGTCACATGCTTCTTAACAGTTCGGCTGTAACTGTTTAAAGGACCAACAATACTCTGTGTGCAAGCAACAGCACTGATCTGTACAGACAGCATCACACTCAATCTAAGCCTATTTATATTTAGACACATTTACTTCTTAACAGTAATATGCACAGTAATTGCACAGTGATACCACTTACATACAATAAacttcattttcatatattgtACAGAATATACAGAACCAGATATAATGGCAAACAGAGAGATATAAAACTGATTAATTGGCACTTTGTAAAAGATAaagatatgttttatattaggtggccttaaccactatgtgcttacatttaataaattaataagttggtacaatgcatttattgtgtacattaattacatctgtaattagtTTCTTTAATTACACTGATAATTACACTTGTTTACCCTTCCCTTataccttaacccacccttaaacttACCCATACTACCACTCTGTCTCTAACCTtctcaatagcagcagaagtgttttgcaatacaatatgaacacaataagtacactgGACTTATATATTGATGTaagtatatatagtatttaagaccacttaatataaaatggCAGCAAAGGTAATAAATCTATTGGTAGAAAATGATGCAAAgtttgtgtaaaataataagtaaagtGTTATAATAGTGAGGTCCAATGGAAGCCCTGGAGTGAGCGAAATAGATTACTGATCAAATATTGGAGTTCTTCTGTTATTCACCATAAAATTTGTTTATATCTTCTTCGTACATTTTACTGACGACAGGTCTTTTGAGCTTCATGGTTGGacctgagaaaaacaacaacaaaaaaacttcaaatcTAATGCATCCATCGGACTGTTTACATAGTTGACTATAATTACGCATTTAGGAATGCAGTTAGGCAAATACATATTCAGTTCCGTAAAGAAACGTGAGATCTACTGACACAAATGCTTCTCATAGCTGTCTGTCACACTGACAGATAAAAGTACTTCtgcagtatataataatataataatcatatacATCCATGTATTAGATACCGGTAATAATCACTTGTTCCGTTTTTTATCTATGTCTATATGAAGAACTAACACTTACCAAGTTCTCCACCGGATATGGAGAAGTCTCGTTGAAGGATGGTCCACTTTTGGACTCTCTGGGCATTGGAAGTAGCTTTGGCATTTATGCAGTCTATGCCCTCCTGGATGGCTTTGTAAATGGCTGGTTCTTTTTTGTTAATGATTTCTGAGACTTTGCTGGCAATTACACCATGCCGCCGACAAAACTCCACAGCTAACGGGGTCAGTTCATCTGTGGGGTCTCCATTGTCATCAACGTTacactaaaaagaaaacaaattagcaAAGATTTTTTGATAGTTGATGGTATGAACGCATCATTTGgtaaaatgtgcaaatttaaGTGTCTCATTAAAGAATAGTTCACGCAAACATTTTGACTGCTAAAAAATATCTCACCTTCACGTGGTGACGTTGTTTGTTCATTggaacaggtttggagaaatttggGATTACGTCTCTTGCttaccaatggatcctctgtgATCCTCAAGTATaaagctaaatttctccaaacctgctCAACGACCTCCTGAGGATaaagaaattttcatttttttttaataaatgtagacTCACCTTGAGTGTAAGTAGCATAGACAGAAACTTCTTTTTATCTCCAACCAGCATGACATTGCTGATGATTGACACCTCttcttttaatgcatcctcAATAGGGACAGGTGGAATATTTTCTCCACCAGCAGTAATGATCAATTCTGGTCAATAAGGCAGACACGTATAAGCAAATGTTTATGGGTTGTAGCACTACAGtttatgcataaatgcattattaaacatataatgTCCATATAAGTAATCAACAACTTTAAATCAGCAGTTTTACAAATcatgcttcattttctttttgaatgttttgttggCAGTACTCCAGGGGAATGTAAGTCGTTCCCTCAGTAAAGCTGTTTTGCACTACCAATACTAGTCAGCTGAACTCTGGataattctttttttagatgttcagaagtaaaatgttaattcagTAAGGTCTTATAAACAGGCAATGtcttatataaatgtttattattcacTAATAAAACCGTTCTTAAAACGTCCCAAAAAATGaatattgtcatcatttactcaacatcATGTCAGTCCAAACCCTGTATGaatttctctcttctgtggaacataattAGAGAAATTTAAGAAAATTTTGGTAACATTCTAGAAAAtaccttttgtgttccacagaagaaagtcatttggaacaacttgagggtgaggaaatgatgacaggatttagTAGCAGTACCTTTGTCATGAATTCAGTAATATCTAGCAGTATTAatttctgtcctgttttattatttcatatactACATCTTTAACTGACTTTATTTAAATCCCTGTGATTAAAAATACCTCAGAAACCAAGTTGGTGGGCATTGTTTTACCcttattttacaaatgtgaaATTCTCTATTTTGATGTGTATTTCTACCTTTTATTCTGCCAGTGATGAACAGGAAGTCATCTTTATCATGTTTGCCCAGGTCTCCCGAGTGAAGCCACCCATCTGTATCCAATGCCTCCTCTGTCTTTTCTGGCATGTTCAGGTATCCCATAAACACATGTCTCCCCCAGAAACAGATCTCACCGGTCCCATCAGTTTCTGGCTTGTCTAACTTAGTTTTGCAGCCAGACAACACCTTACCACAAC
>TU55088
tattccATAAGGTAGTCATctataaaaggaaataaacaaatgcatactTTGCTCGTAGTGttctaattatattatttatttatatattccagCATATAATCTCCGCTTATAAATATTCAATGTGCTGGGTGAAATTTCAACAGCAAGAGAACGAACAATTGTCACATGCTTCTTAACAGTTCGGCTGTAACTGTTTAAAGGACCAACAATACTCTGTGTGCAAGCAACAGCACTGATCTGTACAGACAGCATCACACTCAATCTAAGCCTATTTATATTTAGACACATTTACTTCTTAACAGTAATATGCACAGTAATTGCACAGTGATACCACTTACATACAATAAacttcattttcatatattgtACAGAATATACAGAACCAGATATAATGGCAAACAGAGAGATATAAAACTGATTAATTGGCACTTTGTAAAAGATAaagatatgttttatattaggtggccttaaccactatgtgcttacatttaataaattaataagttggtacaatgcatttattgtgtacattaattacatctgtaattagtTTCTTTAATTACACTGATAATTACACTTGTTTACCCTTCCCTTataccttaacccacccttaaacttACCCATACTACCACTCTGTCTCTAACCTtctcaatagcagcagaagtgttttgcaatacaatatgaacacaataagtacactgGACTTATATATTGATGTaagtatatatagtatttaagaccacttaatataaaatggCAGCAAAGGTAATAAATCTATTGGTAGAAAATGATGCAAAgtttgtgtaaaataataagtaaagtGTTATAATAGTGAGGTCCAATGGAAGCCCTGGAGTGAGCGAAATAGATTACTGATCAAATATTGGAGTTCTTCTGTTATTCACCATAAAATTTGTTTATATCTTCTTCGTACATTTTACTGACGACAGGTCTTTTGAGCTTCATGGTTGGacctgagaaaaa

Function


NR:

description
PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU55087 True 2937 lncRNA 0.35 2 17354606 17357759
TU55088 False 984 lncRNA 0.32 2 17354606 17355806

Neighbor


gene id symbol gene type direction distance location
LOC122345236 sh2d3c,LOC107731039 coding upstream 26192 17319860 ~ 17328414 (+)
LOC122344734 col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608 coding upstream 38337 17260152 ~ 17316269 (+)
LOC122344732 LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130 coding upstream 100707 17229394 ~ 17253899 (+)
edil3a edil3a,edil3,LOC107685241,LOC107669516 coding upstream 191716 17035795 ~ 17162890 (+)
LOC122346216 fam101a,LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding upstream 800042 16543835 ~ 16554564 (+)
LOC122345919 camsap1,camsap1a,LOC107705949,LOC107675701,LOC107661566 coding downstream 15514 17373273 ~ 17374248 (+)
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding downstream 17093 17374852 ~ 17377009 (+)
rasa1a rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998 coding downstream 196651 17554410 ~ 17586352 (+)
LOC122345176 LOC107720189,LOC107660966 coding downstream 234154 17591913 ~ 17593686 (+)
polr3g polr3g,LOC107669519,LOC107557435,LOC107756241 coding downstream 538315 17896074 ~ 17899622 (+)
G37333 NA non-coding upstream 1510 17351156 ~ 17353096 (+)
G37330 NA non-coding upstream 3684 17350591 ~ 17350922 (+)
G37308 NA non-coding upstream 464629 16889197 ~ 16889977 (+)
G37291 NA non-coding upstream 527130 16827125 ~ 16827476 (+)
G37286 NA non-coding upstream 542189 16787830 ~ 16812417 (+)
LOC122345748 NA non-coding downstream 236109 17593868 ~ 17614996 (+)
G37433 NA non-coding downstream 534192 17891951 ~ 17893273 (+)
G37449 NA non-coding downstream 661571 18019330 ~ 18019601 (+)
G37475 LOC107720216,LOC107575123,LOC107567414,LOC107756269,LOC107720179,LOC107699689 non-coding downstream 680373 18038132 ~ 18044946 (+)
LOC122345897 NA non-coding downstream 747340 18105099 ~ 18120648 (+)
G37228 ncor2,LOC107742750 other upstream 792865 16486620 ~ 16561741 (+)
G37227 NA other upstream 793874 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 959044 16391797 ~ 16395562 (+)
G36640 NA other upstream 2634119 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 2701695 14645945 ~ 14652911 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 7090 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 168265 17526024 ~ 17527444 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 1485060 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 1581054 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 1604563 18962322 ~ 19014100 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G87832 NA non-coding CI01000015 null 1477306 ~ 1478126 (-)
mexican tetra (Astyanax mexicanus) G74192 NA non-coding NC_035904.1 CM008307.1 16451518 ~ 16452533 (+)